RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 DCBLD2Q96PD2 775 aa15.2■□□□□ 0.02
SMAD4-209ENST00000589941 STK25O00506 426 aa15.19■□□□□ 0.02
SMAD4-209ENST00000589941 ATMINO43313 823 aaPredicted RBP15.19■□□□□ 0.02
SMAD4-209ENST00000589941 BCL11BQ9C0K0 894 aaPredicted RBP15.19■□□□□ 0.02
SMAD4-209ENST00000589941 SYNJ1O43426 1573 aa15.19■□□□□ 0.02
SMAD4-209ENST00000589941 ATN1P54259 1190 aaPredicted RBP15.18■□□□□ 0.02
SMAD4-209ENST00000589941 ASTLQ6HA08 431 aaPredicted RBP15.18■□□□□ 0.02
SMAD4-209ENST00000589941 SNAPC4Q5SXM2 1469 aa15.17■□□□□ 0.02
SMAD4-209ENST00000589941 HS6ST3Q8IZP7 471 aa15.16■□□□□ 0.02
SMAD4-209ENST00000589941 STK24Q9Y6E0 443 aa15.16■□□□□ 0.02
SMAD4-209ENST00000589941 PELP1Q8IZL8 1130 aaKnown RBP15.14■□□□□ 0.01
SMAD4-209ENST00000589941 POLA1P09884 1462 aaPredicted RBP15.14■□□□□ 0.01
SMAD4-209ENST00000589941 GAPVD1Q14C86 1478 aa15.14■□□□□ 0.01
SMAD4-209ENST00000589941 ERCC6L2Q5T890 1561 aa15.13■□□□□ 0.01
SMAD4-209ENST00000589941 CABP2Q9NPB3 220 aa15.12■□□□□ 0.01
SMAD4-209ENST00000589941 TRIM35Q9UPQ4 493 aa15.12■□□□□ 0.01
SMAD4-209ENST00000589941 RAD54L2Q9Y4B4 1467 aa15.11■□□□□ 0.01
SMAD4-209ENST00000589941 ABCC8Q09428 1581 aa15.09■□□□□ 0.01
SMAD4-209ENST00000589941 PBRM1Q86U86 1689 aa15.08■□□□□ 0
SMAD4-209ENST00000589941 WDR97A6NE52 1622 aa15.06■□□□□ 0
SMAD4-209ENST00000589941 EFCAB3Q8N7B9 438 aa15.06■□□□□ 0
SMAD4-209ENST00000589941 TDRD9Q8NDG6 1382 aaKnown RBP15.04■□□□□ -0
SMAD4-209ENST00000589941 CCDC88BA6NC98 1476 aa15.03■□□□□ -0
SMAD4-209ENST00000589941 MAGI1Q96QZ7 1491 aaPredicted RBP15.02■□□□□ -0
SMAD4-209ENST00000589941 NKX1-1Q15270 411 aaPredicted RBP15.02■□□□□ -0
SMAD4-209ENST00000589941 GOLGA2Q08379 1002 aa15□□□□□ -0.01
SMAD4-209ENST00000589941 SYNJ2O15056 1496 aa14.99□□□□□ -0.01
SMAD4-209ENST00000589941 KDM4FA0A1W2PPD8 638 aa14.98□□□□□ -0.01
SMAD4-209ENST00000589941 MKRN3Q13064 507 aaKnown RBP14.98□□□□□ -0.01
SMAD4-209ENST00000589941 BBXQ8WY36 941 aaPredicted RBP14.96□□□□□ -0.01
SMAD4-209ENST00000589941 FGD5Q6ZNL6 1462 aa14.95□□□□□ -0.02
SMAD4-209ENST00000589941 CEP170Q5SW79 1584 aa14.94□□□□□ -0.02
SMAD4-209ENST00000589941 SLC39A7Q92504 469 aa14.94□□□□□ -0.02
SMAD4-209ENST00000589941 MFRPQ9BY79 579 aa14.94□□□□□ -0.02
SMAD4-209ENST00000589941 PHF8Q9UPP1 1060 aa14.94□□□□□ -0.02
SMAD4-209ENST00000589941 CHMP7Q8WUX9 453 aaPredicted RBP14.93□□□□□ -0.02
SMAD4-209ENST00000589941 GRIN2BQ13224 1484 aa14.93□□□□□ -0.02
SMAD4-209ENST00000589941 SOGA1O94964 1423 aa14.92□□□□□ -0.02
SMAD4-209ENST00000589941 IRX5P78411 483 aaPredicted RBP14.92□□□□□ -0.02
SMAD4-209ENST00000589941 IER5LQ5T953 404 aa14.92□□□□□ -0.02
SMAD4-209ENST00000589941 METRNQ9UJH8 293 aa14.92□□□□□ -0.02
SMAD4-209ENST00000589941 KDM6BO15054 1643 aa14.92□□□□□ -0.02
SMAD4-209ENST00000589941 SHROOM2Q13796 1616 aa14.92□□□□□ -0.02
SMAD4-209ENST00000589941 POTEFA5A3E0 1075 aa14.91□□□□□ -0.02
SMAD4-209ENST00000589941 SOX12O15370 315 aa14.91□□□□□ -0.02
SMAD4-209ENST00000589941 C7P10643 843 aa14.9□□□□□ -0.02
SMAD4-209ENST00000589941 COLQQ9Y215 455 aaPredicted RBP14.9□□□□□ -0.02
SMAD4-209ENST00000589941 TSPOAP1O95153 1857 aa14.9□□□□□ -0.02
SMAD4-209ENST00000589941 DIP2BQ9P265 1576 aa14.9□□□□□ -0.02
SMAD4-209ENST00000589941 HECW2Q9P2P5 1572 aa14.9□□□□□ -0.02
SMAD4-209ENST00000589941 FBXO22Q8NEZ5 403 aa14.89□□□□□ -0.03
SMAD4-209ENST00000589941 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.89□□□□□ -0.031e-7■□□□□ 11.2
SMAD4-209ENST00000589941 ABCA5Q8WWZ7 1642 aa14.88□□□□□ -0.03
SMAD4-209ENST00000589941 MS4A4AQ96JQ5 239 aa14.87□□□□□ -0.03
SMAD4-209ENST00000589941 CUX1P39880 1505 aa14.86□□□□□ -0.03
SMAD4-209ENST00000589941 PDCD7Q8N8D1 485 aaKnown RBP14.85□□□□□ -0.03
SMAD4-209ENST00000589941 GTPBP6O43824 516 aaPredicted RBP14.84□□□□□ -0.03
SMAD4-209ENST00000589941 NLRP6P59044 892 aa14.84□□□□□ -0.03
SMAD4-209ENST00000589941 OCEL1Q9H607 264 aa14.84□□□□□ -0.03
SMAD4-209ENST00000589941 SEC24BO95487 1268 aa14.83□□□□□ -0.04
SMAD4-209ENST00000589941 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.83□□□□□ -0.04
SMAD4-209ENST00000589941 DPY19L2Q6NUT2 758 aa14.82□□□□□ -0.04
SMAD4-209ENST00000589941 ADAMTS12P58397 1594 aa14.81□□□□□ -0.04
SMAD4-209ENST00000589941 PLCG2P16885 1265 aa14.81□□□□□ -0.04
SMAD4-209ENST00000589941 GRIN2AQ12879 1464 aa14.8□□□□□ -0.04
SMAD4-209ENST00000589941 ABCC10Q5T3U5 1492 aa14.8□□□□□ -0.04
SMAD4-209ENST00000589941 PAXIP1Q6ZW49 1069 aaPredicted RBP14.79□□□□□ -0.04
SMAD4-209ENST00000589941 ADGRL1O94910 1474 aa14.78□□□□□ -0.04
SMAD4-209ENST00000589941 PPP1R37O75864 691 aa14.77□□□□□ -0.05
SMAD4-209ENST00000589941 CFAP44Q96MT7 982 aa14.77□□□□□ -0.05
SMAD4-209ENST00000589941 MAPKBP1O60336 1514 aa14.76□□□□□ -0.05
SMAD4-209ENST00000589941 NUP160Q12769 1436 aa14.76□□□□□ -0.05
SMAD4-209ENST00000589941 POTEB2H3BUK9 544 aa14.76□□□□□ -0.05
SMAD4-209ENST00000589941 SPRYD3Q8NCJ5 442 aa14.76□□□□□ -0.05
SMAD4-209ENST00000589941 ADCY10Q96PN6 1610 aa14.76□□□□□ -0.05
SMAD4-209ENST00000589941 PPRC1Q5VV67 1664 aaKnown RBP14.74□□□□□ -0.05
SMAD4-209ENST00000589941 FAM69CQ0P6D2 419 aa14.7□□□□□ -0.06
SMAD4-209ENST00000589941 RYDENQ9NUL5 291 aaKnown RBP14.7□□□□□ -0.06
SMAD4-209ENST00000589941 POTEJP0CG39 1038 aa14.69□□□□□ -0.06
SMAD4-209ENST00000589941 PLCB2Q00722 1185 aa14.69□□□□□ -0.06
SMAD4-209ENST00000589941 ABCA10Q8WWZ4 1543 aa14.68□□□□□ -0.06
SMAD4-209ENST00000589941 RUSC2Q8N2Y8 1516 aa14.65□□□□□ -0.06
SMAD4-209ENST00000589941 PRG4Q92954 1404 aaPredicted RBP14.64□□□□□ -0.07
SMAD4-209ENST00000589941 BOLA1Q9Y3E2 137 aa14.63□□□□□ -0.07
SMAD4-209ENST00000589941 L3MBTL3Q96JM7 780 aaPredicted RBP14.62□□□□□ -0.07
SMAD4-209ENST00000589941 MICALL2Q8IY33 904 aa14.61□□□□□ -0.07
SMAD4-209ENST00000589941 TMEM121BQ9BXQ6 578 aaPredicted RBP14.6□□□□□ -0.07
SMAD4-209ENST00000589941 FBXO41Q8TF61 875 aa14.57□□□□□ -0.08
SMAD4-209ENST00000589941 LHX8Q68G74 356 aa14.56□□□□□ -0.08
SMAD4-209ENST00000589941 G3V3G9 751 aa14.54□□□□□ -0.08
SMAD4-209ENST00000589941 TSHZ2Q9NRE2 1034 aa14.54□□□□□ -0.08
SMAD4-209ENST00000589941 LMTK3Q96Q04 1460 aa14.53□□□□□ -0.08
SMAD4-209ENST00000589941 COL17A1Q9UMD9 1497 aaPredicted RBP14.53□□□□□ -0.08
SMAD4-209ENST00000589941 FHAD1B1AJZ9 1412 aa14.53□□□□□ -0.08
SMAD4-209ENST00000589941 CADPS2Q86UW7 1296 aa14.52□□□□□ -0.09
SMAD4-209ENST00000589941 CUL7Q14999 1698 aa14.51□□□□□ -0.09
SMAD4-209ENST00000589941 ERICH3Q5RHP9 1530 aa14.48□□□□□ -0.09
SMAD4-209ENST00000589941 HAP1P54257 671 aaPredicted RBP14.48□□□□□ -0.09
SMAD4-209ENST00000589941 TMEM92Q6UXU6 159 aa14.48□□□□□ -0.09
SMAD4-209ENST00000589941 MAP3K4Q9Y6R4 1608 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms