RNA–Protein interactions for RNA: ENST00000589577.1

VPS25-204, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 5

Gene VPS25, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-204ENST00000589577 MLECQ14165 292 aa10.85□□□□□ -0.67
VPS25-204ENST00000589577 UHRF1BP1Q6BDS2 1440 aa10.84□□□□□ -0.67
VPS25-204ENST00000589577 MAGI2Q86UL8 1455 aa10.84□□□□□ -0.67
VPS25-204ENST00000589577 C3P01024 1663 aa10.83□□□□□ -0.68
VPS25-204ENST00000589577 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS25-204ENST00000589577 SAMD9Q5K651 1589 aa10.82□□□□□ -0.68
VPS25-204ENST00000589577 NUP153P49790 1475 aaKnown RBP10.81□□□□□ -0.68
VPS25-204ENST00000589577 NCOA1Q15788 1441 aa10.8□□□□□ -0.68
VPS25-204ENST00000589577 C9orf84Q5VXU9 1444 aa10.79□□□□□ -0.68
VPS25-204ENST00000589577 ATP10AO60312 1499 aa10.79□□□□□ -0.68
VPS25-204ENST00000589577 PRXQ9BXM0 1461 aa10.76□□□□□ -0.69
VPS25-204ENST00000589577 P3H3Q8IVL6 736 aa10.76□□□□□ -0.69
VPS25-204ENST00000589577 CAMSAP1Q5T5Y3 1602 aa10.74□□□□□ -0.69
VPS25-204ENST00000589577 UBAP1LF5GYI3 381 aa10.74□□□□□ -0.69
VPS25-204ENST00000589577 ZNF335Q9H4Z2 1342 aaPredicted RBP10.74□□□□□ -0.69
VPS25-204ENST00000589577 SCAPERQ9BY12 1400 aa10.74□□□□□ -0.69
VPS25-204ENST00000589577 DIP2CQ9Y2E4 1556 aa10.73□□□□□ -0.69
VPS25-204ENST00000589577 KDM5CP41229 1560 aa10.73□□□□□ -0.69
VPS25-204ENST00000589577 REREQ9P2R6 1566 aa10.73□□□□□ -0.69
VPS25-204ENST00000589577 CHIC1Q5VXU3 224 aa10.72□□□□□ -0.69
VPS25-204ENST00000589577 ABCA6Q8N139 1617 aa10.72□□□□□ -0.69
VPS25-204ENST00000589577 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.71□□□□□ -0.69
VPS25-204ENST00000589577 HNRNPUL2Q1KMD3 747 aaKnown RBP10.71□□□□□ -0.69
VPS25-204ENST00000589577 MYO5CQ9NQX4 1742 aa10.7□□□□□ -0.7
VPS25-204ENST00000589577 TRAPPC8Q9Y2L5 1435 aa10.7□□□□□ -0.7
VPS25-204ENST00000589577 HSPA1LP34931 641 aa10.7□□□□□ -0.7
VPS25-204ENST00000589577 ZNF142P52746 1687 aaPredicted RBP10.69□□□□□ -0.7
VPS25-204ENST00000589577 PLCH2O75038 1416 aa10.69□□□□□ -0.7
VPS25-204ENST00000589577 SUPT6HQ7KZ85 1726 aaKnown RBP10.68□□□□□ -0.7
VPS25-204ENST00000589577 ALKQ9UM73 1620 aa10.68□□□□□ -0.7
VPS25-204ENST00000589577 AGLP35573 1532 aa10.68□□□□□ -0.7
VPS25-204ENST00000589577 MROH2AA6NES4 1674 aa10.67□□□□□ -0.7
VPS25-204ENST00000589577 MYO3AQ8NEV4 1616 aa10.67□□□□□ -0.7
VPS25-204ENST00000589577 ZNF518AQ6AHZ1 1483 aa10.67□□□□□ -0.7
VPS25-204ENST00000589577 NCKAP5LQ9HCH0 1330 aa10.66□□□□□ -0.7
VPS25-204ENST00000589577 PLEKHD1A6NEE1 506 aa10.66□□□□□ -0.7
VPS25-204ENST00000589577 CDK13Q14004 1512 aaKnown RBP10.66□□□□□ -0.7
VPS25-204ENST00000589577 TCOF1Q13428 1488 aaKnown RBP10.66□□□□□ -0.7
VPS25-204ENST00000589577 FAM9AQ8IZU1 332 aaPredicted RBP10.65□□□□□ -0.7
VPS25-204ENST00000589577 PLA2R1Q13018 1463 aa10.65□□□□□ -0.7
VPS25-204ENST00000589577 KIF14Q15058 1648 aa10.64□□□□□ -0.71
VPS25-204ENST00000589577 NPATQ14207 1427 aa10.64□□□□□ -0.71
VPS25-204ENST00000589577 CEP170BQ9Y4F5 1589 aaPredicted RBP10.63□□□□□ -0.71
VPS25-204ENST00000589577 KIDINS220Q9ULH0 1771 aa10.62□□□□□ -0.71
VPS25-204ENST00000589577 MLH3Q9UHC1 1453 aa10.61□□□□□ -0.71
VPS25-204ENST00000589577 CNTLNQ9NXG0 1405 aa10.61□□□□□ -0.71
VPS25-204ENST00000589577 PIP4K2BP78356 416 aa10.61□□□□□ -0.71
VPS25-204ENST00000589577 AFAP1Q8N556 730 aa10.61□□□□□ -0.71
VPS25-204ENST00000589577 PHF23Q9BUL5 403 aaPredicted RBP10.61□□□□□ -0.71
VPS25-204ENST00000589577 POLR1AO95602 1720 aaPredicted RBP10.61□□□□□ -0.71
VPS25-204ENST00000589577 SCAF1Q9H7N4 1312 aaKnown RBP10.6□□□□□ -0.71
VPS25-204ENST00000589577 CDC42BPBQ9Y5S2 1711 aa10.6□□□□□ -0.71
VPS25-204ENST00000589577 NEURL4Q96JN8 1562 aa10.6□□□□□ -0.71
VPS25-204ENST00000589577 RGS17Q9UGC6 210 aaPredicted RBP10.59□□□□□ -0.71
VPS25-204ENST00000589577 CLTCQ00610 1675 aaKnown RBP10.59□□□□□ -0.71
VPS25-204ENST00000589577 ITSN2Q9NZM3 1697 aa10.59□□□□□ -0.71
VPS25-204ENST00000589577 CPS1P31327 1500 aa10.58□□□□□ -0.72
VPS25-204ENST00000589577 EFCAB2Q5VUJ9 269 aa10.58□□□□□ -0.72
VPS25-204ENST00000589577 ARHGAP5Q13017 1502 aa10.58□□□□□ -0.72
VPS25-204ENST00000589577 PKD2Q13563 968 aa10.57□□□□□ -0.72
VPS25-204ENST00000589577 ABCC1P33527 1531 aa10.57□□□□□ -0.72
VPS25-204ENST00000589577 SETD1AO15047 1707 aaKnown RBP10.56□□□□□ -0.72
VPS25-204ENST00000589577 DNMT1P26358 1616 aaKnown RBP10.56□□□□□ -0.72
VPS25-204ENST00000589577 VWDEQ8N2E2 1590 aa10.56□□□□□ -0.72
VPS25-204ENST00000589577 ZMYM3Q14202 1370 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 SRCAPQ6ZRS2 3230 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 TOM1O60784 492 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 PPP6R1Q9UPN7 881 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 PTPRKQ15262 1439 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 LRRIQ1Q96JM4 1722 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 SHANK2Q9UPX8 1470 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 PREX2Q70Z35 1606 aa10.55□□□□□ -0.72
VPS25-204ENST00000589577 STRCP1A6NGW2 1772 aa10.54□□□□□ -0.72
VPS25-204ENST00000589577 ESF1Q9H501 851 aaKnown RBP10.54□□□□□ -0.72
VPS25-204ENST00000589577 PLXNC1O60486 1568 aa10.52□□□□□ -0.73
VPS25-204ENST00000589577 RANGAP1P46060 587 aaPredicted RBP10.51□□□□□ -0.73
VPS25-204ENST00000589577 MYT1LQ9UL68 1186 aa10.51□□□□□ -0.73
VPS25-204ENST00000589577 RNF17Q9BXT8 1623 aaKnown RBP10.51□□□□□ -0.73
VPS25-204ENST00000589577 A2ML1A8K2U0 1454 aa10.5□□□□□ -0.73
VPS25-204ENST00000589577 SAMD9LQ8IVG5 1584 aa10.5□□□□□ -0.73
VPS25-204ENST00000589577 CDC42BPAQ5VT25 1732 aa10.49□□□□□ -0.73
VPS25-204ENST00000589577 TROQ12816 1431 aaPredicted RBP10.49□□□□□ -0.73
VPS25-204ENST00000589577 SENP3Q9H4L4 574 aaPredicted RBP10.48□□□□□ -0.73
VPS25-204ENST00000589577 POTEAQ6S8J7 498 aa10.47□□□□□ -0.73
VPS25-204ENST00000589577 SYNMO15061 1565 aa10.47□□□□□ -0.73
VPS25-204ENST00000589577 INO80Q9ULG1 1556 aaPredicted RBP10.47□□□□□ -0.73
VPS25-204ENST00000589577 LRRC7Q96NW7 1537 aa10.46□□□□□ -0.74
VPS25-204ENST00000589577 DEPDC5O75140 1603 aa10.46□□□□□ -0.74
VPS25-204ENST00000589577 XIRP1Q702N8 1843 aaKnown RBP10.46□□□□□ -0.74
VPS25-204ENST00000589577 IQGAP1P46940 1657 aa10.45□□□□□ -0.74
VPS25-204ENST00000589577 ATP7AQ04656 1500 aa10.44□□□□□ -0.74
VPS25-204ENST00000589577 MED14O60244 1454 aa10.44□□□□□ -0.74
VPS25-204ENST00000589577 SYCP2Q9BX26 1530 aa10.43□□□□□ -0.74
VPS25-204ENST00000589577 CSRNP3Q8WYN3 585 aa10.43□□□□□ -0.74
VPS25-204ENST00000589577 CLIP1P30622 1438 aa10.42□□□□□ -0.74
VPS25-204ENST00000589577 ZC3H13Q5T200 1668 aaKnown RBP10.42□□□□□ -0.74
VPS25-204ENST00000589577 A2MP01023 1474 aa10.42□□□□□ -0.74
VPS25-204ENST00000589577 NPHP4O75161 1426 aaPredicted RBP10.41□□□□□ -0.74
VPS25-204ENST00000589577 ADGBQ8N7X0 1667 aa10.41□□□□□ -0.74
VPS25-204ENST00000589577 FMN1Q68DA7 1419 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms