RNA–Protein interactions for RNA: ENST00000583577.1

MKS1-212, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-212ENST00000583577 ZMYM4Q5VZL5 1548 aa16.12■□□□□ 0.17
MKS1-212ENST00000583577 UBAP1LF5GYI3 381 aa16.11■□□□□ 0.17
MKS1-212ENST00000583577 ARHGEF12Q9NZN5 1544 aa16.09■□□□□ 0.17
MKS1-212ENST00000583577 CFAP74Q9C0B2 1584 aa16.09■□□□□ 0.17
MKS1-212ENST00000583577 HECW1Q76N89 1606 aa16.08■□□□□ 0.17
MKS1-212ENST00000583577 MED1Q15648 1581 aaPredicted RBP16.07■□□□□ 0.16
MKS1-212ENST00000583577 RAPGEF6Q8TEU7 1601 aa16.05■□□□□ 0.16
MKS1-212ENST00000583577 MAGI2Q86UL8 1455 aa16.05■□□□□ 0.16
MKS1-212ENST00000583577 CHIC1Q5VXU3 224 aa16.04■□□□□ 0.16
MKS1-212ENST00000583577 ATP10AO60312 1499 aa16.01■□□□□ 0.15
MKS1-212ENST00000583577 C3P01024 1663 aa16.01■□□□□ 0.15
MKS1-212ENST00000583577 PHF23Q9BUL5 403 aaPredicted RBP16■□□□□ 0.15
MKS1-212ENST00000583577 C9orf84Q5VXU9 1444 aa16■□□□□ 0.15
MKS1-212ENST00000583577 SCAF1Q9H7N4 1312 aaKnown RBP15.99■□□□□ 0.15
MKS1-212ENST00000583577 ZNF335Q9H4Z2 1342 aaPredicted RBP15.98■□□□□ 0.15
MKS1-212ENST00000583577 HSPA1LP34931 641 aa15.98■□□□□ 0.15
MKS1-212ENST00000583577 NCOA1Q15788 1441 aa15.98■□□□□ 0.15
MKS1-212ENST00000583577 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.98■□□□□ 0.15
MKS1-212ENST00000583577 SCAPERQ9BY12 1400 aa15.97■□□□□ 0.15
MKS1-212ENST00000583577 PLEKHD1A6NEE1 506 aa15.97■□□□□ 0.15
MKS1-212ENST00000583577 NUP153P49790 1475 aaKnown RBP15.95■□□□□ 0.14
MKS1-212ENST00000583577 PIP4K2BP78356 416 aa15.94■□□□□ 0.14
MKS1-212ENST00000583577 CAMSAP1Q5T5Y3 1602 aa15.94■□□□□ 0.14
MKS1-212ENST00000583577 EEA1Q15075 1411 aa15.92■□□□□ 0.14
MKS1-212ENST00000583577 NCKAP5LQ9HCH0 1330 aa15.92■□□□□ 0.14
MKS1-212ENST00000583577 ESF1Q9H501 851 aaKnown RBP15.91■□□□□ 0.14
MKS1-212ENST00000583577 MYT1LQ9UL68 1186 aa15.91■□□□□ 0.14
MKS1-212ENST00000583577 TRAPPC8Q9Y2L5 1435 aa15.91■□□□□ 0.14
MKS1-212ENST00000583577 SAMD9Q5K651 1589 aa15.9■□□□□ 0.14
MKS1-212ENST00000583577 SUPT6HQ7KZ85 1726 aaKnown RBP15.89■□□□□ 0.13
MKS1-212ENST00000583577 CSRNP3Q8WYN3 585 aa15.85■□□□□ 0.13
MKS1-212ENST00000583577 PRXQ9BXM0 1461 aa15.84■□□□□ 0.13
MKS1-212ENST00000583577 PLCH2O75038 1416 aa15.84■□□□□ 0.13
MKS1-212ENST00000583577 DIP2CQ9Y2E4 1556 aa15.83■□□□□ 0.13
MKS1-212ENST00000583577 MYO5CQ9NQX4 1742 aa15.83■□□□□ 0.13
MKS1-212ENST00000583577 TOM1O60784 492 aa15.83■□□□□ 0.12
MKS1-212ENST00000583577 RANGAP1P46060 587 aaPredicted RBP15.83■□□□□ 0.12
MKS1-212ENST00000583577 SENP3Q9H4L4 574 aaPredicted RBP15.82■□□□□ 0.12
MKS1-212ENST00000583577 AFAP1Q8N556 730 aa15.81■□□□□ 0.12
MKS1-212ENST00000583577 ZNF518AQ6AHZ1 1483 aa15.8■□□□□ 0.12
MKS1-212ENST00000583577 EFCAB2Q5VUJ9 269 aa15.8■□□□□ 0.12
MKS1-212ENST00000583577 ABCA6Q8N139 1617 aa15.79■□□□□ 0.12
MKS1-212ENST00000583577 PKD2Q13563 968 aa15.78■□□□□ 0.12
MKS1-212ENST00000583577 PPP6R1Q9UPN7 881 aa15.78■□□□□ 0.12
MKS1-212ENST00000583577 KDM5CP41229 1560 aa15.78■□□□□ 0.12
MKS1-212ENST00000583577 REREQ9P2R6 1566 aa15.78■□□□□ 0.12
MKS1-212ENST00000583577 AGLP35573 1532 aa15.77■□□□□ 0.11
MKS1-212ENST00000583577 CDK13Q14004 1512 aaKnown RBP15.76■□□□□ 0.11
MKS1-212ENST00000583577 CNTLNQ9NXG0 1405 aa15.76■□□□□ 0.11
MKS1-212ENST00000583577 MROH2AA6NES4 1674 aa15.74■□□□□ 0.11
MKS1-212ENST00000583577 ZNF142P52746 1687 aaPredicted RBP15.74■□□□□ 0.11
MKS1-212ENST00000583577 PLA2R1Q13018 1463 aa15.74■□□□□ 0.11
MKS1-212ENST00000583577 MYO3AQ8NEV4 1616 aa15.74■□□□□ 0.11
MKS1-212ENST00000583577 NPATQ14207 1427 aa15.74■□□□□ 0.11
MKS1-212ENST00000583577 TCOF1Q13428 1488 aaKnown RBP15.73■□□□□ 0.11
MKS1-212ENST00000583577 ARHGAP5Q13017 1502 aa15.72■□□□□ 0.11
MKS1-212ENST00000583577 CEP170BQ9Y4F5 1589 aaPredicted RBP15.71■□□□□ 0.11
MKS1-212ENST00000583577 RGS17Q9UGC6 210 aaPredicted RBP15.71■□□□□ 0.11
MKS1-212ENST00000583577 CPS1P31327 1500 aa15.7■□□□□ 0.1
MKS1-212ENST00000583577 ZMYM3Q14202 1370 aa15.7■□□□□ 0.1
MKS1-212ENST00000583577 MLH3Q9UHC1 1453 aa15.69■□□□□ 0.1
MKS1-212ENST00000583577 CLTCQ00610 1675 aaKnown RBP15.69■□□□□ 0.1
MKS1-212ENST00000583577 KIF14Q15058 1648 aa15.68■□□□□ 0.1
MKS1-212ENST00000583577 POLR1AO95602 1720 aaPredicted RBP15.68■□□□□ 0.1
MKS1-212ENST00000583577 PTPRKQ15262 1439 aa15.68■□□□□ 0.1
MKS1-212ENST00000583577 ALKQ9UM73 1620 aa15.67■□□□□ 0.1
MKS1-212ENST00000583577 KIDINS220Q9ULH0 1771 aa15.67■□□□□ 0.1
MKS1-212ENST00000583577 SHANK2Q9UPX8 1470 aa15.66■□□□□ 0.1
MKS1-212ENST00000583577 ATP1B4Q9UN42 357 aaPredicted RBP15.66■□□□□ 0.1
MKS1-212ENST00000583577 CDC42BPBQ9Y5S2 1711 aa15.65■□□□□ 0.1
MKS1-212ENST00000583577 SETD1AO15047 1707 aaKnown RBP15.64■□□□□ 0.09
MKS1-212ENST00000583577 SRCAPQ6ZRS2 3230 aa15.64■□□□□ 0.09
MKS1-212ENST00000583577 ITSN2Q9NZM3 1697 aa15.63■□□□□ 0.09
MKS1-212ENST00000583577 EHMT2Q96KQ7 1210 aa15.62■□□□□ 0.09
MKS1-212ENST00000583577 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
MKS1-212ENST00000583577 POTEAQ6S8J7 498 aa15.61■□□□□ 0.09
MKS1-212ENST00000583577 DNMT1P26358 1616 aaKnown RBP15.61■□□□□ 0.09
MKS1-212ENST00000583577 HRCP23327 699 aa15.6■□□□□ 0.09
MKS1-212ENST00000583577 NEURL4Q96JN8 1562 aa15.6■□□□□ 0.09
MKS1-212ENST00000583577 CDK11AQ9UQ88 783 aaPredicted RBP15.58■□□□□ 0.08
MKS1-212ENST00000583577 A2ML1A8K2U0 1454 aa15.58■□□□□ 0.08
MKS1-212ENST00000583577 ABCC1P33527 1531 aa15.58■□□□□ 0.08
MKS1-212ENST00000583577 VWDEQ8N2E2 1590 aa15.58■□□□□ 0.08
MKS1-212ENST00000583577 STRCP1A6NGW2 1772 aa15.54■□□□□ 0.08
MKS1-212ENST00000583577 PREX2Q70Z35 1606 aa15.54■□□□□ 0.08
MKS1-212ENST00000583577 GGT6Q6P531 493 aa15.54■□□□□ 0.08
MKS1-212ENST00000583577 TROQ12816 1431 aaPredicted RBP15.53■□□□□ 0.08
MKS1-212ENST00000583577 RNF17Q9BXT8 1623 aaKnown RBP15.53■□□□□ 0.08
MKS1-212ENST00000583577 CLIP1P30622 1438 aa15.52■□□□□ 0.08
MKS1-212ENST00000583577 SAMD9LQ8IVG5 1584 aa15.51■□□□□ 0.07
MKS1-212ENST00000583577 ANKLE2Q86XL3 938 aa15.5■□□□□ 0.07
MKS1-212ENST00000583577 LRRC7Q96NW7 1537 aa15.49■□□□□ 0.07
MKS1-212ENST00000583577 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.49■□□□□ 0.07
MKS1-212ENST00000583577 LRRIQ1Q96JM4 1722 aa15.48■□□□□ 0.07
MKS1-212ENST00000583577 SPAG9O60271 1321 aaKnown RBP15.48■□□□□ 0.07
MKS1-212ENST00000583577 CDC42BPAQ5VT25 1732 aa15.48■□□□□ 0.07
MKS1-212ENST00000583577 NPHP4O75161 1426 aaPredicted RBP15.47■□□□□ 0.07
MKS1-212ENST00000583577 ZNF777Q9ULD5 760 aaPredicted RBP15.47■□□□□ 0.07
MKS1-212ENST00000583577 IQGAP1P46940 1657 aa15.47■□□□□ 0.07
MKS1-212ENST00000583577 SYNMO15061 1565 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms