RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 TARBP1Q13395 1621 aaKnown RBP18.05■□□□□ 0.48
SS18-221ENST00000582448 C7P10643 843 aa18.04■□□□□ 0.48
SS18-221ENST00000582448 PDAP1Q13442 181 aaKnown RBP18.04■□□□□ 0.48
SS18-221ENST00000582448 LHX8Q68G74 356 aa18.03■□□□□ 0.48
SS18-221ENST00000582448 CHMP7Q8WUX9 453 aaPredicted RBP18.03■□□□□ 0.48
SS18-221ENST00000582448 POTEFA5A3E0 1075 aa18■□□□□ 0.47
SS18-221ENST00000582448 RIOK3O14730 519 aaKnown RBP18■□□□□ 0.47
SS18-221ENST00000582448 POTEB2H3BUK9 544 aa17.99■□□□□ 0.47
SS18-221ENST00000582448 SNAPC4Q5SXM2 1469 aa17.96■□□□□ 0.47
SS18-221ENST00000582448 RGL2O15211 777 aa17.95■□□□□ 0.46
SS18-221ENST00000582448 COLQQ9Y215 455 aaPredicted RBP17.94■□□□□ 0.46
SS18-221ENST00000582448 IER5LQ5T953 404 aa17.92■□□□□ 0.46
SS18-221ENST00000582448 FGD5Q6ZNL6 1462 aa17.92■□□□□ 0.46
SS18-221ENST00000582448 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.88■□□□□ 0.45
SS18-221ENST00000582448 VGFO15240 615 aaPredicted RBP17.88■□□□□ 0.45
SS18-221ENST00000582448 ZFP91Q96JP5 570 aaPredicted RBP17.88■□□□□ 0.45
SS18-221ENST00000582448 CABP2Q9NPB3 220 aa17.86■□□□□ 0.45
SS18-221ENST00000582448 GRIN2BQ13224 1484 aa17.86■□□□□ 0.45
SS18-221ENST00000582448 SYNJ1O43426 1573 aa17.85■□□□□ 0.45
SS18-221ENST00000582448 POTEJP0CG39 1038 aa17.85■□□□□ 0.45
SS18-221ENST00000582448 IRX5P78411 483 aaPredicted RBP17.85■□□□□ 0.45
SS18-221ENST00000582448 CLASP1Q7Z460 1538 aa17.84■□□□□ 0.45
SS18-221ENST00000582448 MAGI1Q96QZ7 1491 aaPredicted RBP17.84■□□□□ 0.45
SS18-221ENST00000582448 SEC24BO95487 1268 aa17.84■□□□□ 0.45
SS18-221ENST00000582448 CUX1P39880 1505 aa17.83■□□□□ 0.45
SS18-221ENST00000582448 GOLGA2Q08379 1002 aa17.81■□□□□ 0.44
SS18-221ENST00000582448 SYNJ2O15056 1496 aa17.81■□□□□ 0.44
SS18-221ENST00000582448 MKRN3Q13064 507 aaKnown RBP17.8■□□□□ 0.44
SS18-221ENST00000582448 GAPVD1Q14C86 1478 aa17.77■□□□□ 0.44
SS18-221ENST00000582448 WDR97A6NE52 1622 aa17.77■□□□□ 0.44
SS18-221ENST00000582448 PLCG2P16885 1265 aa17.76■□□□□ 0.43
SS18-221ENST00000582448 OCEL1Q9H607 264 aa17.75■□□□□ 0.43
SS18-221ENST00000582448 EFCAB3Q8N7B9 438 aa17.74■□□□□ 0.43
SS18-221ENST00000582448 OTUD5Q96G74 571 aa17.74■□□□□ 0.43
SS18-221ENST00000582448 PDCD7Q8N8D1 485 aaKnown RBP17.72■□□□□ 0.43
SS18-221ENST00000582448 BCL11BQ9C0K0 894 aaPredicted RBP17.72■□□□□ 0.43
SS18-221ENST00000582448 TAOK2Q9UL54 1235 aa17.72■□□□□ 0.43
SS18-221ENST00000582448 SUPT5HO00267 1087 aaKnown RBP17.71■□□□□ 0.43
SS18-221ENST00000582448 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.71■□□□□ 0.437e-7■■■□□ 14.8
SS18-221ENST00000582448 ILDR1Q86SU0 546 aaPredicted RBP17.69■□□□□ 0.42
SS18-221ENST00000582448 STK24Q9Y6E0 443 aa17.68■□□□□ 0.42
SS18-221ENST00000582448 PBRM1Q86U86 1689 aa17.67■□□□□ 0.42
SS18-221ENST00000582448 STK25O00506 426 aa17.67■□□□□ 0.42
SS18-221ENST00000582448 ABCA10Q8WWZ4 1543 aa17.66■□□□□ 0.42
SS18-221ENST00000582448 ERCC6L2Q5T890 1561 aa17.63■□□□□ 0.41
SS18-221ENST00000582448 DPY19L2Q6NUT2 758 aa17.62■□□□□ 0.41
SS18-221ENST00000582448 GRIN2AQ12879 1464 aa17.61■□□□□ 0.41
SS18-221ENST00000582448 WRNQ14191 1432 aaPredicted RBP eCLIP17.6■□□□□ 0.41
SS18-221ENST00000582448 ABCA5Q8WWZ7 1642 aa17.6■□□□□ 0.41
SS18-221ENST00000582448 MAMSTRQ6ZN01 415 aa17.57■□□□□ 0.4
SS18-221ENST00000582448 RTN4Q9NQC3 1192 aaKnown RBP17.56■□□□□ 0.4
SS18-221ENST00000582448 PHF8Q9UPP1 1060 aa17.56■□□□□ 0.4
SS18-221ENST00000582448 SOX12O15370 315 aa17.55■□□□□ 0.4
SS18-221ENST00000582448 CEP170Q5SW79 1584 aa17.54■□□□□ 0.4
SS18-221ENST00000582448 SCUBE2Q9NQ36 999 aa17.54■□□□□ 0.4
SS18-221ENST00000582448 NUP160Q12769 1436 aa17.54■□□□□ 0.4
SS18-221ENST00000582448 MS4A4AQ96JQ5 239 aa17.53■□□□□ 0.4
SS18-221ENST00000582448 FHAD1B1AJZ9 1412 aa17.53■□□□□ 0.4
SS18-221ENST00000582448 AMER1Q5JTC6 1135 aaPredicted RBP17.52■□□□□ 0.4
SS18-221ENST00000582448 JPH4Q96JJ6 628 aa17.52■□□□□ 0.4
SS18-221ENST00000582448 ADAMTS12P58397 1594 aa17.51■□□□□ 0.39
SS18-221ENST00000582448 HS6ST3Q8IZP7 471 aa17.51■□□□□ 0.39
SS18-221ENST00000582448 CHGAP10645 457 aaKnown RBP17.5■□□□□ 0.39
SS18-221ENST00000582448 MFRPQ9BY79 579 aa17.49■□□□□ 0.39
SS18-221ENST00000582448 PRG4Q92954 1404 aaPredicted RBP17.48■□□□□ 0.39
SS18-221ENST00000582448 FAM69CQ0P6D2 419 aa17.47■□□□□ 0.39
SS18-221ENST00000582448 FBXO22Q8NEZ5 403 aa17.47■□□□□ 0.39
SS18-221ENST00000582448 L3MBTL3Q96JM7 780 aaPredicted RBP17.47■□□□□ 0.39
SS18-221ENST00000582448 NLRP6P59044 892 aa17.43■□□□□ 0.38
SS18-221ENST00000582448 TOP2BQ02880 1626 aa17.43■□□□□ 0.38
SS18-221ENST00000582448 SHROOM2Q13796 1616 aa17.41■□□□□ 0.38
SS18-221ENST00000582448 BOLA1Q9Y3E2 137 aa17.41■□□□□ 0.38
SS18-221ENST00000582448 ERICH3Q5RHP9 1530 aa17.41■□□□□ 0.38
SS18-221ENST00000582448 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.38
SS18-221ENST00000582448 SLAIN1Q8ND83 568 aa17.37■□□□□ 0.37
SS18-221ENST00000582448 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.36■□□□□ 0.37
SS18-221ENST00000582448 TTBK1Q5TCY1 1321 aaPredicted RBP17.36■□□□□ 0.37
SS18-221ENST00000582448 TMEM121BQ9BXQ6 578 aaPredicted RBP17.35■□□□□ 0.37
SS18-221ENST00000582448 KIF13AQ9H1H9 1805 aa17.35■□□□□ 0.37
SS18-221ENST00000582448 NKX1-1Q15270 411 aaPredicted RBP17.34■□□□□ 0.37
SS18-221ENST00000582448 C3orf67Q6ZVT6 689 aa17.33■□□□□ 0.36
SS18-221ENST00000582448 ABCC10Q5T3U5 1492 aa17.32■□□□□ 0.36
SS18-221ENST00000582448 G3V3G9 751 aa17.31■□□□□ 0.36
SS18-221ENST00000582448 MICALL2Q8IY33 904 aa17.31■□□□□ 0.36
SS18-221ENST00000582448 KDM4FA0A1W2PPD8 638 aa17.26■□□□□ 0.35
SS18-221ENST00000582448 PPP1R37O75864 691 aa17.26■□□□□ 0.35
SS18-221ENST00000582448 RUSC2Q8N2Y8 1516 aa17.25■□□□□ 0.35
SS18-221ENST00000582448 IGF1RP08069 1367 aa17.23■□□□□ 0.35
SS18-221ENST00000582448 MAPKBP1O60336 1514 aa17.22■□□□□ 0.35
SS18-221ENST00000582448 ADCY10Q96PN6 1610 aa17.22■□□□□ 0.35
SS18-221ENST00000582448 KIAA0586Q9BVV6 1533 aa17.21■□□□□ 0.35
SS18-221ENST00000582448 DIP2BQ9P265 1576 aa17.21■□□□□ 0.35
SS18-221ENST00000582448 TMEM92Q6UXU6 159 aa17.2■□□□□ 0.34
SS18-221ENST00000582448 PTPRGP23470 1445 aa17.2■□□□□ 0.34
SS18-221ENST00000582448 TSPOAP1O95153 1857 aa17.19■□□□□ 0.34
SS18-221ENST00000582448 KDM6BO15054 1643 aa17.18■□□□□ 0.34
SS18-221ENST00000582448 KIF27Q86VH2 1401 aa17.18■□□□□ 0.34
SS18-221ENST00000582448 LCE2DQ5TA82 110 aaPredicted RBP17.15■□□□□ 0.34
SS18-221ENST00000582448 FAM163AQ96GL9 167 aaPredicted RBP17.14■□□□□ 0.33
SS18-221ENST00000582448 CARMIL1Q5VZK9 1371 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms