RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 FBXO22Q8NEZ5 403 aa10.35□□□□□ -0.75
PTPRM-213ENST00000580949 OCEL1Q9H607 264 aa10.35□□□□□ -0.75
PTPRM-213ENST00000580949 ABCC8Q09428 1581 aa10.34□□□□□ -0.75
PTPRM-213ENST00000580949 GTPBP6O43824 516 aaPredicted RBP10.33□□□□□ -0.76
PTPRM-213ENST00000580949 PLCG2P16885 1265 aa10.33□□□□□ -0.76
PTPRM-213ENST00000580949 CFTRP13569 1480 aa10.33□□□□□ -0.76
PTPRM-213ENST00000580949 SEC24BO95487 1268 aa10.32□□□□□ -0.76
PTPRM-213ENST00000580949 CADPSQ9ULU8 1353 aa10.31□□□□□ -0.76
PTPRM-213ENST00000580949 PDCD7Q8N8D1 485 aaKnown RBP10.31□□□□□ -0.76
PTPRM-213ENST00000580949 SPRYD3Q8NCJ5 442 aa10.31□□□□□ -0.76
PTPRM-213ENST00000580949 MS4A4AQ96JQ5 239 aa10.31□□□□□ -0.76
PTPRM-213ENST00000580949 COLQQ9Y215 455 aaPredicted RBP10.31□□□□□ -0.76
PTPRM-213ENST00000580949 POTEFA5A3E0 1075 aa10.3□□□□□ -0.76
PTPRM-213ENST00000580949 PAXIP1Q6ZW49 1069 aaPredicted RBP10.29□□□□□ -0.76
PTPRM-213ENST00000580949 WRNQ14191 1432 aaPredicted RBP eCLIP10.28□□□□□ -0.76
PTPRM-213ENST00000580949 LOC105371045A0A1W2PR82 267 aa10.28□□□□□ -0.76
PTPRM-213ENST00000580949 PLCB2Q00722 1185 aa10.26□□□□□ -0.77
PTPRM-213ENST00000580949 FAM9AQ8IZU1 332 aaPredicted RBP10.26□□□□□ -0.77
PTPRM-213ENST00000580949 CFAP44Q96MT7 982 aa10.26□□□□□ -0.77
PTPRM-213ENST00000580949 DPY19L2Q6NUT2 758 aa10.25□□□□□ -0.77
PTPRM-213ENST00000580949 NESP48681 1621 aa10.23□□□□□ -0.77
PTPRM-213ENST00000580949 L3MBTL3Q96JM7 780 aaPredicted RBP10.23□□□□□ -0.77
PTPRM-213ENST00000580949 PPP1R37O75864 691 aa10.22□□□□□ -0.77
PTPRM-213ENST00000580949 SYNJ1O43426 1573 aa10.22□□□□□ -0.77
PTPRM-213ENST00000580949 SOGA1O94964 1423 aa10.2□□□□□ -0.78
PTPRM-213ENST00000580949 BOLA1Q9Y3E2 137 aa10.19□□□□□ -0.78
PTPRM-213ENST00000580949 CUX1P39880 1505 aa10.18□□□□□ -0.78
PTPRM-213ENST00000580949 G3V3G9 751 aa10.18□□□□□ -0.78
PTPRM-213ENST00000580949 FANCD2Q9BXW9 1451 aa10.17□□□□□ -0.78
PTPRM-213ENST00000580949 POTEB2H3BUK9 544 aa10.17□□□□□ -0.78
PTPRM-213ENST00000580949 TMEM121BQ9BXQ6 578 aaPredicted RBP10.17□□□□□ -0.78
PTPRM-213ENST00000580949 RUSC2Q8N2Y8 1516 aa10.17□□□□□ -0.78
PTPRM-213ENST00000580949 MICALL2Q8IY33 904 aa10.16□□□□□ -0.78
PTPRM-213ENST00000580949 TOP2BQ02880 1626 aa10.15□□□□□ -0.78
PTPRM-213ENST00000580949 LAMC3Q9Y6N6 1575 aa10.14□□□□□ -0.79
PTPRM-213ENST00000580949 POTEJP0CG39 1038 aa10.13□□□□□ -0.79
PTPRM-213ENST00000580949 BIVM-ERCC5R4GMW8 1640 aa10.12□□□□□ -0.79
PTPRM-213ENST00000580949 PRDM2Q13029 1718 aa10.11□□□□□ -0.79
PTPRM-213ENST00000580949 MAMSTRQ6ZN01 415 aa10.11□□□□□ -0.79
PTPRM-213ENST00000580949 PDS5BQ9NTI5 1447 aa10.1□□□□□ -0.79
PTPRM-213ENST00000580949 LHX8Q68G74 356 aa10.1□□□□□ -0.79
PTPRM-213ENST00000580949 C3orf67Q6ZVT6 689 aa10.1□□□□□ -0.79
PTPRM-213ENST00000580949 EEA1Q15075 1411 aa10.09□□□□□ -0.79
PTPRM-213ENST00000580949 TSHZ2Q9NRE2 1034 aa10.09□□□□□ -0.79
PTPRM-213ENST00000580949 HAP1P54257 671 aaPredicted RBP10.08□□□□□ -0.8
PTPRM-213ENST00000580949 SCUBE2Q9NQ36 999 aa10.08□□□□□ -0.8
PTPRM-213ENST00000580949 CEP164Q9UPV0 1460 aa10.08□□□□□ -0.8
PTPRM-213ENST00000580949 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.07□□□□□ -0.8
PTPRM-213ENST00000580949 URB2Q14146 1524 aaKnown RBP10.07□□□□□ -0.8
PTPRM-213ENST00000580949 TOPBP1Q92547 1522 aa10.07□□□□□ -0.8
PTPRM-213ENST00000580949 FGD5Q6ZNL6 1462 aa10.05□□□□□ -0.8
PTPRM-213ENST00000580949 CADPS2Q86UW7 1296 aa10.05□□□□□ -0.8
PTPRM-213ENST00000580949 DNMBPQ6XZF7 1577 aa10.04□□□□□ -0.8
PTPRM-213ENST00000580949 CRISPLD2Q9H0B8 497 aa10.02□□□□□ -0.81
PTPRM-213ENST00000580949 RAD54L2Q9Y4B4 1467 aa10.02□□□□□ -0.81
PTPRM-213ENST00000580949 KIF27Q86VH2 1401 aa10.01□□□□□ -0.81
PTPRM-213ENST00000580949 PDE4AP27815 886 aa10.01□□□□□ -0.81
PTPRM-213ENST00000580949 TMEM92Q6UXU6 159 aa10.01□□□□□ -0.81
PTPRM-213ENST00000580949 OTUD5Q96G74 571 aa10.01□□□□□ -0.81
PTPRM-213ENST00000580949 POLA1P09884 1462 aaPredicted RBP10.01□□□□□ -0.81
PTPRM-213ENST00000580949 KIF21AQ7Z4S6 1674 aa10□□□□□ -0.81
PTPRM-213ENST00000580949 CUX2O14529 1486 aa10□□□□□ -0.81
PTPRM-213ENST00000580949 KIF3CO14782 793 aa10□□□□□ -0.81
PTPRM-213ENST00000580949 TMC2Q8TDI7 906 aa10□□□□□ -0.81
PTPRM-213ENST00000580949 GPHNQ9NQX3 736 aaPredicted RBP10□□□□□ -0.81
PTPRM-213ENST00000580949 NCKAP5LQ9HCH0 1330 aa10□□□□□ -0.81
PTPRM-213ENST00000580949 IGF1RP08069 1367 aa10□□□□□ -0.81
PTPRM-213ENST00000580949 C2orf72A6NCS6 295 aa9.98□□□□□ -0.81
PTPRM-213ENST00000580949 SLAIN1Q8ND83 568 aa9.98□□□□□ -0.81
PTPRM-213ENST00000580949 TNIKQ9UKE5 1360 aa9.98□□□□□ -0.81
PTPRM-213ENST00000580949 MRC2Q9UBG0 1479 aa9.98□□□□□ -0.81
PTPRM-213ENST00000580949 UBTFP17480 764 aaKnown RBP9.97□□□□□ -0.81
PTPRM-213ENST00000580949 VSIG10Q8N0Z9 540 aa9.97□□□□□ -0.81
PTPRM-213ENST00000580949 PRXQ9BXM0 1461 aa9.97□□□□□ -0.81
PTPRM-213ENST00000580949 ABCA10Q8WWZ4 1543 aa9.97□□□□□ -0.81
PTPRM-213ENST00000580949 MFSD10Q14728 455 aa9.96□□□□□ -0.82
PTPRM-213ENST00000580949 GOLGA3Q08378 1498 aa9.96□□□□□ -0.82
PTPRM-213ENST00000580949 RAPGEF2Q9Y4G8 1499 aa9.96□□□□□ -0.82
PTPRM-213ENST00000580949 LARP6Q9BRS8 491 aaKnown RBP9.95□□□□□ -0.82
PTPRM-213ENST00000580949 KIF21BO75037 1637 aa9.94□□□□□ -0.82
PTPRM-213ENST00000580949 TDRD9Q8NDG6 1382 aaKnown RBP9.94□□□□□ -0.82
PTPRM-213ENST00000580949 FOXK1P85037 733 aa9.94□□□□□ -0.82
PTPRM-213ENST00000580949 ERCC6Q03468 1493 aa9.93□□□□□ -0.82
PTPRM-213ENST00000580949 DDX27Q96GQ7 796 aaKnown RBP9.93□□□□□ -0.82
PTPRM-213ENST00000580949 CEP162Q5TB80 1403 aa9.91□□□□□ -0.82
PTPRM-213ENST00000580949 DSG2Q14126 1118 aa9.91□□□□□ -0.82
PTPRM-213ENST00000580949 PPP1R15BQ5SWA1 713 aa9.91□□□□□ -0.82
PTPRM-213ENST00000580949 WDR70Q9NW82 654 aa9.91□□□□□ -0.82
PTPRM-213ENST00000580949 KDM2AQ9Y2K7 1162 aa9.91□□□□□ -0.82
PTPRM-213ENST00000580949 WDR62O43379 1518 aa9.91□□□□□ -0.82
PTPRM-213ENST00000580949 CARMIL1Q5VZK9 1371 aa9.9□□□□□ -0.82
PTPRM-213ENST00000580949 PLPP6Q8IY26 295 aa9.89□□□□□ -0.83
PTPRM-213ENST00000580949 TARBP1Q13395 1621 aaKnown RBP9.89□□□□□ -0.83
PTPRM-213ENST00000580949 ERICH3Q5RHP9 1530 aa9.88□□□□□ -0.83
PTPRM-213ENST00000580949 AQRO60306 1485 aaKnown RBP eCLIP9.86□□□□□ -0.83
PTPRM-213ENST00000580949 GAPVD1Q14C86 1478 aa9.86□□□□□ -0.83
PTPRM-213ENST00000580949 WDR97A6NE52 1622 aa9.86□□□□□ -0.83
PTPRM-213ENST00000580949 THOC2Q8NI27 1593 aaKnown RBP9.86□□□□□ -0.83
PTPRM-213ENST00000580949 IFT140Q96RY7 1462 aa9.85□□□□□ -0.83
PTPRM-213ENST00000580949 SNPHO15079 494 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms