RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 FRAT1Q92837 279 aaPredicted RBP13.32□□□□□ -0.28
PTPRM-205ENST00000577827 KIF15Q9NS87 1388 aa13.31□□□□□ -0.28
PTPRM-205ENST00000577827 FOXD1Q16676 465 aa13.31□□□□□ -0.28
PTPRM-205ENST00000577827 CASC1Q6TDU7 716 aa13.31□□□□□ -0.28
PTPRM-205ENST00000577827 HSCBQ8IWL3 235 aa13.31□□□□□ -0.28
PTPRM-205ENST00000577827 ANKRD30AQ9BXX3 1397 aa13.31□□□□□ -0.28
PTPRM-205ENST00000577827 NPM1P06748 294 aaKnown RBP eCLIP13.3□□□□□ -0.28
PTPRM-205ENST00000577827 MAPK8IP3Q9UPT6 1336 aa13.3□□□□□ -0.28
PTPRM-205ENST00000577827 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
PTPRM-205ENST00000577827 PTMSP20962 102 aa13.29□□□□□ -0.28
PTPRM-205ENST00000577827 MYBBP1AQ9BQG0 1328 aaKnown RBP13.29□□□□□ -0.28
PTPRM-205ENST00000577827 TNNT2P45379 298 aaPredicted RBP13.28□□□□□ -0.28
PTPRM-205ENST00000577827 HSP90AB1P08238 724 aaKnown RBP13.28□□□□□ -0.28
PTPRM-205ENST00000577827 CFAP44Q96MT7 982 aa13.28□□□□□ -0.28
PTPRM-205ENST00000577827 UACAQ9BZF9 1416 aa13.28□□□□□ -0.28
PTPRM-205ENST00000577827 NEUROD2Q15784 382 aa13.28□□□□□ -0.28
PTPRM-205ENST00000577827 PDE4AP27815 886 aa13.27□□□□□ -0.29
PTPRM-205ENST00000577827 PNNQ9H307 717 aaKnown RBP13.27□□□□□ -0.29
PTPRM-205ENST00000577827 PTMAP06454 111 aaKnown RBP13.26□□□□□ -0.29
PTPRM-205ENST00000577827 CADPSQ9ULU8 1353 aa13.26□□□□□ -0.29
PTPRM-205ENST00000577827 NUP155O75694 1391 aa13.26□□□□□ -0.29
PTPRM-205ENST00000577827 RRP1P56182 461 aaKnown RBP13.25□□□□□ -0.29
PTPRM-205ENST00000577827 ESF1Q9H501 851 aaKnown RBP13.25□□□□□ -0.29
PTPRM-205ENST00000577827 GOLGA2Q08379 1002 aa13.24□□□□□ -0.29
PTPRM-205ENST00000577827 LRRC9Q6ZRR7 1453 aa13.24□□□□□ -0.29
PTPRM-205ENST00000577827 CNTLNQ9NXG0 1405 aa13.24□□□□□ -0.29
PTPRM-205ENST00000577827 CENPQQ7L2Z9 268 aaPredicted RBP13.24□□□□□ -0.29
PTPRM-205ENST00000577827 PMFBP1Q8TBY8 1022 aa13.24□□□□□ -0.29
PTPRM-205ENST00000577827 RWDD1Q9H446 243 aaPredicted RBP13.23□□□□□ -0.29
PTPRM-205ENST00000577827 FGD6Q6ZV73 1430 aa13.23□□□□□ -0.29
PTPRM-205ENST00000577827 CCDC7Q96M83 1385 aa13.22□□□□□ -0.29
PTPRM-205ENST00000577827 GBP4Q96PP9 640 aa13.22□□□□□ -0.29
PTPRM-205ENST00000577827 GSE1Q14687 1217 aa13.21□□□□□ -0.29
PTPRM-205ENST00000577827 IGF1RP08069 1367 aa13.21□□□□□ -0.3
PTPRM-205ENST00000577827 FAM161AQ3B820 660 aa13.2□□□□□ -0.3
PTPRM-205ENST00000577827 DNTTIP2Q5QJE6 756 aaKnown RBP13.2□□□□□ -0.3
PTPRM-205ENST00000577827 CUX1P39880 1505 aa13.2□□□□□ -0.3
PTPRM-205ENST00000577827 MSNP26038 577 aaKnown RBP13.2□□□□□ -0.3
PTPRM-205ENST00000577827 USP47Q96K76 1375 aa13.19□□□□□ -0.3
PTPRM-205ENST00000577827 CARMIL2Q6F5E8 1435 aa13.19□□□□□ -0.3
PTPRM-205ENST00000577827 KANK1Q14678 1352 aa13.19□□□□□ -0.3
PTPRM-205ENST00000577827 GOLGA6L3A6NEY3 463 aa13.19□□□□□ -0.3
PTPRM-205ENST00000577827 RSPH4AQ5TD94 716 aa13.19□□□□□ -0.3
PTPRM-205ENST00000577827 MORC1Q86VD1 984 aa13.19□□□□□ -0.3
PTPRM-205ENST00000577827 RSPH6AQ9H0K4 717 aa13.19□□□□□ -0.3
PTPRM-205ENST00000577827 IPO8O15397 1037 aaKnown RBP13.18□□□□□ -0.3
PTPRM-205ENST00000577827 TDRD9Q8NDG6 1382 aaKnown RBP13.18□□□□□ -0.3
PTPRM-205ENST00000577827 ARAP1Q96P48 1450 aa13.18□□□□□ -0.3
PTPRM-205ENST00000577827 EXOC6Q8TAG9 804 aa13.18□□□□□ -0.3
PTPRM-205ENST00000577827 PDS5BQ9NTI5 1447 aa13.18□□□□□ -0.3
PTPRM-205ENST00000577827 MYOM3Q5VTT5 1437 aa13.18□□□□□ -0.3
PTPRM-205ENST00000577827 SLKQ9H2G2 1235 aaPredicted RBP13.17□□□□□ -0.3
PTPRM-205ENST00000577827 HAP1P54257 671 aaPredicted RBP13.16□□□□□ -0.3
PTPRM-205ENST00000577827 EIF3AQ14152 1382 aaKnown RBP13.16□□□□□ -0.3
PTPRM-205ENST00000577827 PRXQ9BXM0 1461 aa13.16□□□□□ -0.3
PTPRM-205ENST00000577827 ST20-MTHFSA0A0A6YYL1 179 aa13.15□□□□□ -0.3
PTPRM-205ENST00000577827 NGEFQ8N5V2 710 aa13.15□□□□□ -0.3
PTPRM-205ENST00000577827 WASHC2AQ641Q2 1341 aa13.15□□□□□ -0.3
PTPRM-205ENST00000577827 KIF7Q2M1P5 1343 aa13.14□□□□□ -0.31
PTPRM-205ENST00000577827 CASKIN1Q8WXD9 1431 aa13.14□□□□□ -0.31
PTPRM-205ENST00000577827 U2SURPO15042 1029 aaKnown RBP13.14□□□□□ -0.31
PTPRM-205ENST00000577827 SYNJ1O43426 1573 aa13.14□□□□□ -0.31
PTPRM-205ENST00000577827 CENPJQ9HC77 1338 aaPredicted RBP13.13□□□□□ -0.31
PTPRM-205ENST00000577827 CGNL1Q0VF96 1302 aa13.12□□□□□ -0.31
PTPRM-205ENST00000577827 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.12□□□□□ -0.31
PTPRM-205ENST00000577827 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.11□□□□□ -0.31
PTPRM-205ENST00000577827 FYCO1Q9BQS8 1478 aa13.11□□□□□ -0.31
PTPRM-205ENST00000577827 BRD4O60885 1362 aaPredicted RBP13.1□□□□□ -0.31
PTPRM-205ENST00000577827 SPRYD3Q8NCJ5 442 aa13.1□□□□□ -0.31
PTPRM-205ENST00000577827 CRBNQ96SW2 442 aa13.1□□□□□ -0.31
PTPRM-205ENST00000577827 DDX11L8A8MPP1 907 aa13.09□□□□□ -0.31
PTPRM-205ENST00000577827 CALD1Q05682 793 aaKnown RBP13.09□□□□□ -0.31
PTPRM-205ENST00000577827 MIA2Q96PC5 1412 aa13.09□□□□□ -0.31
PTPRM-205ENST00000577827 MCCP23508 829 aa13.09□□□□□ -0.31
PTPRM-205ENST00000577827 E9PSI1 815 aa13.09□□□□□ -0.31
PTPRM-205ENST00000577827 GZF1Q9H116 711 aaPredicted RBP13.09□□□□□ -0.31
PTPRM-205ENST00000577827 POGKQ9P215 609 aa13.09□□□□□ -0.31
PTPRM-205ENST00000577827 CCDC144AA2RUR9 1427 aa13.09□□□□□ -0.31
PTPRM-205ENST00000577827 CHAF1AQ13111 956 aaPredicted RBP13.08□□□□□ -0.31
PTPRM-205ENST00000577827 FGD5Q6ZNL6 1462 aa13.08□□□□□ -0.32
PTPRM-205ENST00000577827 PANK3Q9H999 370 aa13.08□□□□□ -0.32
PTPRM-205ENST00000577827 HFM1A2PYH4 1435 aa13.07□□□□□ -0.32
PTPRM-205ENST00000577827 ZRSR1Q15695 479 aaKnown RBP13.07□□□□□ -0.32
PTPRM-205ENST00000577827 TOP2BQ02880 1626 aa13.06□□□□□ -0.32
PTPRM-205ENST00000577827 ITPRIPQ8IWB1 547 aa13.06□□□□□ -0.32
PTPRM-205ENST00000577827 U2AF1L5P0DN76 240 aaPredicted RBP13.06□□□□□ -0.32
PTPRM-205ENST00000577827 U2AF1Q01081 240 aaKnown RBP eCLIP13.06□□□□□ -0.32
PTPRM-205ENST00000577827 FANCD2Q9BXW9 1451 aa13.06□□□□□ -0.32
PTPRM-205ENST00000577827 PLIN1O60240 522 aa13.06□□□□□ -0.32
PTPRM-205ENST00000577827 MFAP1P55081 439 aaKnown RBP13.06□□□□□ -0.32
PTPRM-205ENST00000577827 AAMPQ13685 434 aa13.06□□□□□ -0.32
PTPRM-205ENST00000577827 TIAM1Q13009 1591 aa13.06□□□□□ -0.32
PTPRM-205ENST00000577827 NCOA2Q15596 1464 aa13.05□□□□□ -0.32
PTPRM-205ENST00000577827 WDR97A6NE52 1622 aa13.05□□□□□ -0.32
PTPRM-205ENST00000577827 SMG6Q86US8 1419 aaKnown RBP13.05□□□□□ -0.32
PTPRM-205ENST00000577827 EFCAB5A4FU69 1503 aa13.04□□□□□ -0.32
PTPRM-205ENST00000577827 SKOR2Q2VWA4 1001 aaPredicted RBP13.04□□□□□ -0.32
PTPRM-205ENST00000577827 EFCAB2Q5VUJ9 269 aa13.04□□□□□ -0.32
PTPRM-205ENST00000577827 SYAP1Q96A49 352 aaPredicted RBP13.04□□□□□ -0.32
PTPRM-205ENST00000577827 NCAPD3P42695 1498 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 96.3 ms