RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	EPRS	P07814	1512 aa	Known RBP	14.01	□□□□□ -0.17
SMG6-213	ENST00000573166	CDK13	Q14004	1512 aa	Known RBP	14.01	□□□□□ -0.17
SMG6-213	ENST00000573166	HECW1	Q76N89	1606 aa		14.01	□□□□□ -0.17
SMG6-213	ENST00000573166	ARHGAP5	Q13017	1502 aa		13.99	□□□□□ -0.17
SMG6-213	ENST00000573166	DCAF11	Q8TEB1	546 aa		13.98	□□□□□ -0.17
SMG6-213	ENST00000573166	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
SMG6-213	ENST00000573166	CLSPN	Q9HAW4	1339 aa		13.98	□□□□□ -0.17
SMG6-213	ENST00000573166	TARBP1	Q13395	1621 aa	Known RBP	13.97	□□□□□ -0.17
SMG6-213	ENST00000573166	C14orf37	Q86TY3	774 aa		13.96	□□□□□ -0.17
SMG6-213	ENST00000573166	ABCA5	Q8WWZ7	1642 aa		13.96	□□□□□ -0.18
SMG6-213	ENST00000573166	DDX10	Q13206	875 aa	Known RBP	13.95	□□□□□ -0.18
SMG6-213	ENST00000573166	CARD11	Q9BXL7	1154 aa		13.95	□□□□□ -0.18
SMG6-213	ENST00000573166	NUP160	Q12769	1436 aa		13.94	□□□□□ -0.18
SMG6-213	ENST00000573166	EHBP1L1	Q8N3D4	1523 aa		13.94	□□□□□ -0.18
SMG6-213	ENST00000573166	TIAM1	Q13009	1591 aa		13.94	□□□□□ -0.18
SMG6-213	ENST00000573166	HDGF	P51858	240 aa	Known RBP	13.94	□□□□□ -0.18
SMG6-213	ENST00000573166	PCF11	O94913	1555 aa	Known RBP	13.93	□□□□□ -0.18
SMG6-213	ENST00000573166	RAPGEF3	O95398	923 aa		13.93	□□□□□ -0.18
SMG6-213	ENST00000573166	KIF15	Q9NS87	1388 aa		13.93	□□□□□ -0.18
SMG6-213	ENST00000573166	THOC2	Q8NI27	1593 aa	Known RBP	13.93	□□□□□ -0.18
SMG6-213	ENST00000573166	NEFL	P07196	543 aa		13.92	□□□□□ -0.18
SMG6-213	ENST00000573166	PBRM1	Q86U86	1689 aa		13.92	□□□□□ -0.18
SMG6-213	ENST00000573166	CD109	Q6YHK3	1445 aa		13.89	□□□□□ -0.19
SMG6-213	ENST00000573166	ARHGEF11	O15085	1522 aa		13.89	□□□□□ -0.19
SMG6-213	ENST00000573166	UGGT2	Q9NYU1	1516 aa		13.88	□□□□□ -0.19
SMG6-213	ENST00000573166	POGK	Q9P215	609 aa		13.88	□□□□□ -0.19
SMG6-213	ENST00000573166	MIA2	Q96PC5	1412 aa		13.88	□□□□□ -0.19
SMG6-213	ENST00000573166	SCAPER	Q9BY12	1400 aa		13.88	□□□□□ -0.19
SMG6-213	ENST00000573166	WDR97	A6NE52	1622 aa		13.88	□□□□□ -0.19
SMG6-213	ENST00000573166	TIMELESS	Q9UNS1	1208 aa		13.87	□□□□□ -0.19
SMG6-213	ENST00000573166	TMC1	Q8TDI8	760 aa		13.87	□□□□□ -0.19
SMG6-213	ENST00000573166	ANKRD50	Q9ULJ7	1429 aa		13.86	□□□□□ -0.19
SMG6-213	ENST00000573166	PLEKHH2	Q8IVE3	1493 aa		13.85	□□□□□ -0.19
SMG6-213	ENST00000573166	CTTNBP2	Q8WZ74	1663 aa		13.85	□□□□□ -0.19
SMG6-213	ENST00000573166	ATP10B	O94823	1461 aa		13.84	□□□□□ -0.19
SMG6-213	ENST00000573166	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.83	□□□□□ -0.2
SMG6-213	ENST00000573166	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.83	□□□□□ -0.2
SMG6-213	ENST00000573166	KIAA0556	O60303	1618 aa		13.83	□□□□□ -0.2
SMG6-213	ENST00000573166	RRBP1	Q9P2E9	1410 aa	Known RBP	13.83	□□□□□ -0.2
SMG6-213	ENST00000573166	C9orf84	Q5VXU9	1444 aa		13.82	□□□□□ -0.2
SMG6-213	ENST00000573166	L3MBTL2	Q969R5	705 aa		13.82	□□□□□ -0.2
SMG6-213	ENST00000573166	STK26	Q9P289	416 aa		13.82	□□□□□ -0.2
SMG6-213	ENST00000573166	NUP153	P49790	1475 aa	Known RBP	13.81	□□□□□ -0.2
SMG6-213	ENST00000573166	NEFM	P07197	916 aa		13.81	□□□□□ -0.2
SMG6-213	ENST00000573166	ASXL2	Q76L83	1435 aa		13.81	□□□□□ -0.2
SMG6-213	ENST00000573166	PLEKHG5	O94827	1062 aa		13.81	□□□□□ -0.2
SMG6-213	ENST00000573166	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
SMG6-213	ENST00000573166	CDCA8	Q53HL2	280 aa		13.81	□□□□□ -0.2
SMG6-213	ENST00000573166	RAPGEF6	Q8TEU7	1601 aa		13.8	□□□□□ -0.2
SMG6-213	ENST00000573166	CEP170	Q5SW79	1584 aa		13.8	□□□□□ -0.2
SMG6-213	ENST00000573166	DISP1	Q96F81	1524 aa		13.8	□□□□□ -0.2
SMG6-213	ENST00000573166	EID1	Q9Y6B2	187 aa		13.8	□□□□□ -0.2
SMG6-213	ENST00000573166	CCDC144A	A2RUR9	1427 aa		13.8	□□□□□ -0.2
SMG6-213	ENST00000573166	DHX57	Q6P158	1386 aa	Known RBP	13.79	□□□□□ -0.2
SMG6-213	ENST00000573166	KIF14	Q15058	1648 aa		13.79	□□□□□ -0.2
SMG6-213	ENST00000573166	MAP3K1	Q13233	1512 aa		13.78	□□□□□ -0.2
SMG6-213	ENST00000573166	ADGRL1	O94910	1474 aa		13.76	□□□□□ -0.21
SMG6-213	ENST00000573166	DAPK1	P53355	1430 aa		13.75	□□□□□ -0.21
SMG6-213	ENST00000573166	SLC24A1	O60721	1099 aa		13.75	□□□□□ -0.21
SMG6-213	ENST00000573166	FANCA	O15360	1455 aa		13.74	□□□□□ -0.21
SMG6-213	ENST00000573166	CCDC141	Q6ZP82	1450 aa		13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	ABCC2	Q92887	1545 aa		13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	CAMSAP2	Q08AD1	1489 aa		13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	WDR7	Q9Y4E6	1490 aa		13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	ROCK2	O75116	1388 aa	Known RBP	13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	SRPK2	P78362	688 aa	Known RBP	13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	TMF1	P82094	1093 aa		13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	ERICH6	Q7L0X2	663 aa		13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	MIER1	Q8N108	512 aa		13.72	□□□□□ -0.21
SMG6-213	ENST00000573166	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
SMG6-213	ENST00000573166	VGF	O15240	615 aa	Predicted RBP	13.71	□□□□□ -0.21
SMG6-213	ENST00000573166	KNSTRN	Q9Y448	316 aa		13.71	□□□□□ -0.22
SMG6-213	ENST00000573166	LMOD2	Q6P5Q4	547 aa		13.7	□□□□□ -0.22
SMG6-213	ENST00000573166	GPATCH8	Q9UKJ3	1502 aa	Known RBP	13.7	□□□□□ -0.22
SMG6-213	ENST00000573166	ZBTB7C	A1YPR0	619 aa		13.7	□□□□□ -0.22
SMG6-213	ENST00000573166	FAM9B	Q8IZU0	186 aa		13.7	□□□□□ -0.22
SMG6-213	ENST00000573166	HSPA5	P11021	654 aa	Known RBP	13.69	□□□□□ -0.22
SMG6-213	ENST00000573166	AKNA	Q7Z591	1439 aa		13.69	□□□□□ -0.22
SMG6-213	ENST00000573166	DENND4B	O75064	1496 aa	Predicted RBP	13.69	□□□□□ -0.22
SMG6-213	ENST00000573166	CHD1	O14646	1710 aa		13.69	□□□□□ -0.22
SMG6-213	ENST00000573166	HFM1	A2PYH4	1435 aa		13.68	□□□□□ -0.22
SMG6-213	ENST00000573166	PLCH2	O75038	1416 aa		13.68	□□□□□ -0.22
SMG6-213	ENST00000573166	ABCC5	O15440	1437 aa		13.68	□□□□□ -0.22
SMG6-213	ENST00000573166	HAP1	P54257	671 aa	Predicted RBP	13.67	□□□□□ -0.22
SMG6-213	ENST00000573166	MRS2	Q9HD23	443 aa		13.67	□□□□□ -0.22
SMG6-213	ENST00000573166	PTPN23	Q9H3S7	1636 aa		13.66	□□□□□ -0.22
SMG6-213	ENST00000573166	TRAK1	Q9UPV9	953 aa		13.66	□□□□□ -0.22
SMG6-213	ENST00000573166	POGZ	Q7Z3K3	1410 aa		13.65	□□□□□ -0.22
SMG6-213	ENST00000573166	ROCK1	Q13464	1354 aa		13.64	□□□□□ -0.23
SMG6-213	ENST00000573166	WDR43	Q15061	677 aa	Known RBP eCLIP	13.64	□□□□□ -0.23
SMG6-213	ENST00000573166	NAIP	Q13075	1403 aa		13.64	□□□□□ -0.23
SMG6-213	ENST00000573166	SALL2	Q9Y467	1007 aa	Predicted RBP	13.64	□□□□□ -0.23
SMG6-213	ENST00000573166	PPM1G	O15355	546 aa	Predicted RBP	13.63	□□□□□ -0.23
SMG6-213	ENST00000573166	SAMD9	Q5K651	1589 aa		13.63	□□□□□ -0.23
SMG6-213	ENST00000573166	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.63	□□□□□ -0.23
SMG6-213	ENST00000573166	TEX14	Q8IWB6	1497 aa		13.62	□□□□□ -0.23
SMG6-213	ENST00000573166	NCOA1	Q15788	1441 aa		13.62	□□□□□ -0.23
SMG6-213	ENST00000573166	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.61	□□□□□ -0.23
SMG6-213	ENST00000573166	TNNT2	P45379	298 aa	Predicted RBP	13.6	□□□□□ -0.23
SMG6-213	ENST00000573166	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.6	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms