RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 UHRF1BP1Q6BDS2 1440 aa22.52■■□□□ 1.2
CCDC40-208ENST00000572270 HECW1Q76N89 1606 aa22.52■■□□□ 1.2
CCDC40-208ENST00000572270 SAMD9Q5K651 1589 aa22.51■■□□□ 1.19
CCDC40-208ENST00000572270 NUP153P49790 1475 aaKnown RBP22.5■■□□□ 1.19
CCDC40-208ENST00000572270 PLEKHD1A6NEE1 506 aa22.49■■□□□ 1.19
CCDC40-208ENST00000572270 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.48■■□□□ 1.19
CCDC40-208ENST00000572270 PTPRTO14522 1441 aa22.48■■□□□ 1.19
CCDC40-208ENST00000572270 CEBPAP49715 358 aaPredicted RBP22.47■■□□□ 1.19
CCDC40-208ENST00000572270 IQSEC2Q5JU85 1478 aa22.47■■□□□ 1.19
CCDC40-208ENST00000572270 C9orf84Q5VXU9 1444 aa22.46■■□□□ 1.19
CCDC40-208ENST00000572270 ATP10AO60312 1499 aa22.44■■□□□ 1.18
CCDC40-208ENST00000572270 SETD1BQ9UPS6 1966 aaKnown RBP22.43■■□□□ 1.18
CCDC40-208ENST00000572270 SCAPERQ9BY12 1400 aa22.41■■□□□ 1.18
CCDC40-208ENST00000572270 LTBP4Q8N2S1 1624 aa22.41■■□□□ 1.18
CCDC40-208ENST00000572270 C3P01024 1663 aa22.32■■□□□ 1.16
CCDC40-208ENST00000572270 PLCH2O75038 1416 aa22.31■■□□□ 1.16
CCDC40-208ENST00000572270 RANGAP1P46060 587 aaPredicted RBP22.28■■□□□ 1.16
CCDC40-208ENST00000572270 ESF1Q9H501 851 aaKnown RBP22.28■■□□□ 1.16
CCDC40-208ENST00000572270 NCOA1Q15788 1441 aa22.28■■□□□ 1.16
CCDC40-208ENST00000572270 ZNF518AQ6AHZ1 1483 aa22.28■■□□□ 1.16
CCDC40-208ENST00000572270 UBAP1LF5GYI3 381 aa22.27■■□□□ 1.16
CCDC40-208ENST00000572270 MYO5CQ9NQX4 1742 aa22.27■■□□□ 1.16
CCDC40-208ENST00000572270 MYT1LQ9UL68 1186 aa22.26■■□□□ 1.15
CCDC40-208ENST00000572270 TRAPPC8Q9Y2L5 1435 aa22.24■■□□□ 1.15
CCDC40-208ENST00000572270 EFCAB2Q5VUJ9 269 aa22.24■■□□□ 1.15
CCDC40-208ENST00000572270 CDK13Q14004 1512 aaKnown RBP22.22■■□□□ 1.15
CCDC40-208ENST00000572270 REREQ9P2R6 1566 aa22.22■■□□□ 1.15
CCDC40-208ENST00000572270 KDM5CP41229 1560 aa22.21■■□□□ 1.15
CCDC40-208ENST00000572270 DIP2CQ9Y2E4 1556 aa22.21■■□□□ 1.15
CCDC40-208ENST00000572270 CAMSAP1Q5T5Y3 1602 aa22.2■■□□□ 1.14
CCDC40-208ENST00000572270 MED1Q15648 1581 aaPredicted RBP22.18■■□□□ 1.14
CCDC40-208ENST00000572270 ZNF335Q9H4Z2 1342 aaPredicted RBP22.16■■□□□ 1.14
CCDC40-208ENST00000572270 ABCA6Q8N139 1617 aa22.16■■□□□ 1.14
CCDC40-208ENST00000572270 AGLP35573 1532 aa22.16■■□□□ 1.14
CCDC40-208ENST00000572270 CNTLNQ9NXG0 1405 aa22.15■■□□□ 1.14
CCDC40-208ENST00000572270 AFAP1Q8N556 730 aa22.15■■□□□ 1.14
CCDC40-208ENST00000572270 ARHGAP5Q13017 1502 aa22.15■■□□□ 1.14
CCDC40-208ENST00000572270 CSRNP3Q8WYN3 585 aa22.14■■□□□ 1.13
CCDC40-208ENST00000572270 KIF14Q15058 1648 aa22.11■■□□□ 1.13
CCDC40-208ENST00000572270 NCKAP5LQ9HCH0 1330 aa22.1■■□□□ 1.13
CCDC40-208ENST00000572270 MLH3Q9UHC1 1453 aa22.09■■□□□ 1.13
CCDC40-208ENST00000572270 SCAF1Q9H7N4 1312 aaKnown RBP22.09■■□□□ 1.13
CCDC40-208ENST00000572270 NPATQ14207 1427 aa22.09■■□□□ 1.13
CCDC40-208ENST00000572270 SUPT6HQ7KZ85 1726 aaKnown RBP22.09■■□□□ 1.13
CCDC40-208ENST00000572270 MROH2AA6NES4 1674 aa22.08■■□□□ 1.13
CCDC40-208ENST00000572270 CDK11AQ9UQ88 783 aaPredicted RBP22.07■■□□□ 1.12
CCDC40-208ENST00000572270 PKD2Q13563 968 aa22.06■■□□□ 1.12
CCDC40-208ENST00000572270 PHF23Q9BUL5 403 aaPredicted RBP22.06■■□□□ 1.12
CCDC40-208ENST00000572270 HSPA1LP34931 641 aa22.05■■□□□ 1.12
CCDC40-208ENST00000572270 ATP1B4Q9UN42 357 aaPredicted RBP22.05■■□□□ 1.12
CCDC40-208ENST00000572270 PLA2R1Q13018 1463 aa22.04■■□□□ 1.12
CCDC40-208ENST00000572270 ZNF142P52746 1687 aaPredicted RBP22.04■■□□□ 1.12
CCDC40-208ENST00000572270 PIP4K2BP78356 416 aa22.02■■□□□ 1.12
CCDC40-208ENST00000572270 MYO3AQ8NEV4 1616 aa22.02■■□□□ 1.11
CCDC40-208ENST00000572270 CLIP1P30622 1438 aa22.01■■□□□ 1.11
CCDC40-208ENST00000572270 CDC42BPBQ9Y5S2 1711 aa22■■□□□ 1.11
CCDC40-208ENST00000572270 TROQ12816 1431 aaPredicted RBP21.99■■□□□ 1.11
CCDC40-208ENST00000572270 ITSN2Q9NZM3 1697 aa21.99■■□□□ 1.11
CCDC40-208ENST00000572270 TCOF1Q13428 1488 aaKnown RBP21.99■■□□□ 1.11
CCDC40-208ENST00000572270 TOM1O60784 492 aa21.99■■□□□ 1.11
CCDC40-208ENST00000572270 PPP6R1Q9UPN7 881 aa21.99■■□□□ 1.11
CCDC40-208ENST00000572270 ZMYM3Q14202 1370 aa21.99■■□□□ 1.11
CCDC40-208ENST00000572270 KIDINS220Q9ULH0 1771 aa21.98■■□□□ 1.11
CCDC40-208ENST00000572270 ABCC1P33527 1531 aa21.98■■□□□ 1.11
CCDC40-208ENST00000572270 CEP170BQ9Y4F5 1589 aaPredicted RBP21.98■■□□□ 1.11
CCDC40-208ENST00000572270 FMN1Q68DA7 1419 aa21.96■■□□□ 1.11
CCDC40-208ENST00000572270 PREX2Q70Z35 1606 aa21.95■■□□□ 1.1
CCDC40-208ENST00000572270 EEA1Q15075 1411 aa21.94■■□□□ 1.1
CCDC40-208ENST00000572270 CPS1P31327 1500 aa21.93■■□□□ 1.1
CCDC40-208ENST00000572270 CLTCQ00610 1675 aaKnown RBP21.93■■□□□ 1.1
CCDC40-208ENST00000572270 PTPRKQ15262 1439 aa21.87■■□□□ 1.09
CCDC40-208ENST00000572270 POLR1AO95602 1720 aaPredicted RBP21.86■■□□□ 1.09
CCDC40-208ENST00000572270 SAMD9LQ8IVG5 1584 aa21.85■■□□□ 1.09
CCDC40-208ENST00000572270 SHANK2Q9UPX8 1470 aa21.83■■□□□ 1.09
CCDC40-208ENST00000572270 LRRIQ1Q96JM4 1722 aa21.82■■□□□ 1.08
CCDC40-208ENST00000572270 A2ML1A8K2U0 1454 aa21.82■■□□□ 1.08
CCDC40-208ENST00000572270 DNMT1P26358 1616 aaKnown RBP21.81■■□□□ 1.08
CCDC40-208ENST00000572270 CDC42BPAQ5VT25 1732 aa21.8■■□□□ 1.08
CCDC40-208ENST00000572270 SPAG9O60271 1321 aaKnown RBP21.8■■□□□ 1.08
CCDC40-208ENST00000572270 PLXNC1O60486 1568 aa21.78■■□□□ 1.08
CCDC40-208ENST00000572270 NEURL4Q96JN8 1562 aa21.78■■□□□ 1.08
CCDC40-208ENST00000572270 ATP7AQ04656 1500 aa21.77■■□□□ 1.08
CCDC40-208ENST00000572270 GGT6Q6P531 493 aa21.77■■□□□ 1.08
CCDC40-208ENST00000572270 ARHGAP35Q9NRY4 1499 aa21.77■■□□□ 1.07
CCDC40-208ENST00000572270 SYCP2Q9BX26 1530 aa21.76■■□□□ 1.07
CCDC40-208ENST00000572270 A2MP01023 1474 aa21.76■■□□□ 1.07
CCDC40-208ENST00000572270 SENP3Q9H4L4 574 aaPredicted RBP21.75■■□□□ 1.07
CCDC40-208ENST00000572270 ZNF777Q9ULD5 760 aaPredicted RBP21.74■■□□□ 1.07
CCDC40-208ENST00000572270 ALKQ9UM73 1620 aa21.73■■□□□ 1.07
CCDC40-208ENST00000572270 VWDEQ8N2E2 1590 aa21.72■■□□□ 1.07
CCDC40-208ENST00000572270 INO80Q9ULG1 1556 aaPredicted RBP21.72■■□□□ 1.07
CCDC40-208ENST00000572270 CCDC18Q5T9S5 1454 aa21.71■■□□□ 1.07
CCDC40-208ENST00000572270 UBTFP17480 764 aaKnown RBP21.7■■□□□ 1.06
CCDC40-208ENST00000572270 ANKLE2Q86XL3 938 aa21.68■■□□□ 1.06
CCDC40-208ENST00000572270 RNF17Q9BXT8 1623 aaKnown RBP21.68■■□□□ 1.06
CCDC40-208ENST00000572270 ADGBQ8N7X0 1667 aa21.67■■□□□ 1.06
CCDC40-208ENST00000572270 HNRNPMP52272 730 aaKnown RBP eCLIP21.67■■□□□ 1.06
CCDC40-208ENST00000572270 TNRQ92752 1358 aa21.66■■□□□ 1.06
CCDC40-208ENST00000572270 EHMT2Q96KQ7 1210 aa21.65■■□□□ 1.06
CCDC40-208ENST00000572270 RGS17Q9UGC6 210 aaPredicted RBP21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms