RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MPHOSPH9Q99550 1183 aa14.16□□□□□ -0.14
VPS53-206ENST00000570359 DAPK1P53355 1430 aa14.15□□□□□ -0.14
VPS53-206ENST00000570359 TCOF1Q13428 1488 aaKnown RBP14.14□□□□□ -0.15
VPS53-206ENST00000570359 TROQ12816 1431 aaPredicted RBP14.14□□□□□ -0.15
VPS53-206ENST00000570359 MIA2Q96PC5 1412 aa14.13□□□□□ -0.15
VPS53-206ENST00000570359 SLC4A1APQ9BWU0 796 aaKnown RBP14.13□□□□□ -0.15
VPS53-206ENST00000570359 ABCC5O15440 1437 aa14.13□□□□□ -0.15
VPS53-206ENST00000570359 PTPRGP23470 1445 aa14.12□□□□□ -0.15
VPS53-206ENST00000570359 CHD1O14646 1710 aa14.11□□□□□ -0.15
VPS53-206ENST00000570359 CAMSAP2Q08AD1 1489 aa14.11□□□□□ -0.15
VPS53-206ENST00000570359 ZNF326Q5BKZ1 582 aaKnown RBP14.11□□□□□ -0.15
VPS53-206ENST00000570359 HNRNPMP52272 730 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS53-206ENST00000570359 ATP10BO94823 1461 aa14.08□□□□□ -0.15
VPS53-206ENST00000570359 GPATCH8Q9UKJ3 1502 aaKnown RBP14.08□□□□□ -0.16
VPS53-206ENST00000570359 GCC2Q8IWJ2 1684 aa14.07□□□□□ -0.16
VPS53-206ENST00000570359 CNGB1Q14028 1251 aaPredicted RBP14.07□□□□□ -0.16
VPS53-206ENST00000570359 DENND4BO75064 1496 aaPredicted RBP14.06□□□□□ -0.16
VPS53-206ENST00000570359 ERCC6L2Q5T890 1561 aa14.06□□□□□ -0.16
VPS53-206ENST00000570359 L3MBTL2Q969R5 705 aa14.06□□□□□ -0.16
VPS53-206ENST00000570359 DNMT1P26358 1616 aaKnown RBP14.05□□□□□ -0.16
VPS53-206ENST00000570359 TIMELESSQ9UNS1 1208 aa14.05□□□□□ -0.16
VPS53-206ENST00000570359 ABCA8O94911 1581 aa14.03□□□□□ -0.16
VPS53-206ENST00000570359 POLR3GLQ9BT43 218 aa14.02□□□□□ -0.16
VPS53-206ENST00000570359 TSPY4P0CV99 314 aa14.02□□□□□ -0.17
VPS53-206ENST00000570359 TSPY10P0CW01 314 aa14.02□□□□□ -0.17
VPS53-206ENST00000570359 AKNAQ7Z591 1439 aa14.01□□□□□ -0.17
VPS53-206ENST00000570359 HSPA5P11021 654 aaKnown RBP14.01□□□□□ -0.17
VPS53-206ENST00000570359 PKD2Q13563 968 aa14.01□□□□□ -0.17
VPS53-206ENST00000570359 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14□□□□□ -0.17
VPS53-206ENST00000570359 ITSN2Q9NZM3 1697 aa14□□□□□ -0.17
VPS53-206ENST00000570359 NCOA1Q15788 1441 aa13.99□□□□□ -0.17
VPS53-206ENST00000570359 ROCK1Q13464 1354 aa13.98□□□□□ -0.17
VPS53-206ENST00000570359 ANKRD30AQ9BXX3 1397 aa13.98□□□□□ -0.17
VPS53-206ENST00000570359 ANP32CO43423 234 aa13.98□□□□□ -0.17
VPS53-206ENST00000570359 CDC42BPAQ5VT25 1732 aa13.98□□□□□ -0.17
VPS53-206ENST00000570359 NBPF8Q3BBV2 869 aa13.97□□□□□ -0.17
VPS53-206ENST00000570359 NUP155O75694 1391 aa13.96□□□□□ -0.17
VPS53-206ENST00000570359 C9orf84Q5VXU9 1444 aa13.96□□□□□ -0.17
VPS53-206ENST00000570359 KDM2AQ9Y2K7 1162 aa13.96□□□□□ -0.17
VPS53-206ENST00000570359 ANKRD50Q9ULJ7 1429 aa13.95□□□□□ -0.18
VPS53-206ENST00000570359 ANKRD30BQ9BXX2 1392 aa13.95□□□□□ -0.18
VPS53-206ENST00000570359 KDM5BQ9UGL1 1544 aa13.95□□□□□ -0.18
VPS53-206ENST00000570359 EIF4G2P78344 907 aaKnown RBP eCLIP13.94□□□□□ -0.18
VPS53-206ENST00000570359 ABCC10Q5T3U5 1492 aa13.94□□□□□ -0.18
VPS53-206ENST00000570359 ADCY10Q96PN6 1610 aa13.94□□□□□ -0.18
VPS53-206ENST00000570359 KIF15Q9NS87 1388 aa13.93□□□□□ -0.18
VPS53-206ENST00000570359 MYT1LQ9UL68 1186 aa13.93□□□□□ -0.18
VPS53-206ENST00000570359 ARHGAP5Q13017 1502 aa13.93□□□□□ -0.18
VPS53-206ENST00000570359 PZPP20742 1482 aa13.92□□□□□ -0.18
VPS53-206ENST00000570359 WASHC2AQ641Q2 1341 aa13.91□□□□□ -0.18
VPS53-206ENST00000570359 ADGBQ8N7X0 1667 aa13.91□□□□□ -0.18
VPS53-206ENST00000570359 C11orf95C9JLR9 678 aaPredicted RBP13.9□□□□□ -0.18
VPS53-206ENST00000570359 TTC37Q6PGP7 1564 aa13.9□□□□□ -0.18
VPS53-206ENST00000570359 CROCC2H7BZ55 1655 aa13.89□□□□□ -0.19
VPS53-206ENST00000570359 RGL3Q3MIN7 710 aa13.88□□□□□ -0.19
VPS53-206ENST00000570359 RPRD2Q5VT52 1461 aaKnown RBP13.88□□□□□ -0.19
VPS53-206ENST00000570359 SYCP2Q9BX26 1530 aa13.88□□□□□ -0.19
VPS53-206ENST00000570359 SAMD9LQ8IVG5 1584 aa13.87□□□□□ -0.19
VPS53-206ENST00000570359 CDC42BPBQ9Y5S2 1711 aa13.87□□□□□ -0.19
VPS53-206ENST00000570359 KIAA1107Q9UPP5 1409 aa13.86□□□□□ -0.19
VPS53-206ENST00000570359 BCANQ96GW7 911 aa13.86□□□□□ -0.19
VPS53-206ENST00000570359 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.85□□□□□ -0.19
VPS53-206ENST00000570359 DCAF11Q8TEB1 546 aa13.85□□□□□ -0.19
VPS53-206ENST00000570359 ADGRL2O95490 1459 aa13.85□□□□□ -0.19
VPS53-206ENST00000570359 TEX14Q8IWB6 1497 aa13.85□□□□□ -0.19
VPS53-206ENST00000570359 ABCC2Q92887 1545 aa13.84□□□□□ -0.19
VPS53-206ENST00000570359 CCDC141Q6ZP82 1450 aa13.84□□□□□ -0.19
VPS53-206ENST00000570359 SHROOM2Q13796 1616 aa13.84□□□□□ -0.19
VPS53-206ENST00000570359 SENP3-EIF4A1A0A087X0R7 540 aa13.83□□□□□ -0.19
VPS53-206ENST00000570359 MBD5Q9P267 1494 aa13.83□□□□□ -0.19
VPS53-206ENST00000570359 PREX2Q70Z35 1606 aa13.82□□□□□ -0.2
VPS53-206ENST00000570359 AFAP1Q8N556 730 aa13.81□□□□□ -0.2
VPS53-206ENST00000570359 ZCCHC11Q5TAX3 1644 aaKnown RBP13.8□□□□□ -0.2
VPS53-206ENST00000570359 CCDC184Q52MB2 194 aa13.8□□□□□ -0.2
VPS53-206ENST00000570359 EFCAB2Q5VUJ9 269 aa13.79□□□□□ -0.2
VPS53-206ENST00000570359 CARD11Q9BXL7 1154 aa13.79□□□□□ -0.2
VPS53-206ENST00000570359 HNRNPUQ00839 825 aaKnown RBP eCLIP13.78□□□□□ -0.2
VPS53-206ENST00000570359 SHANK2Q9UPX8 1470 aa13.78□□□□□ -0.2
VPS53-206ENST00000570359 KIF7Q2M1P5 1343 aa13.78□□□□□ -0.2
VPS53-206ENST00000570359 FAM9BQ8IZU0 186 aa13.78□□□□□ -0.2
VPS53-206ENST00000570359 CLASP1Q7Z460 1538 aa13.78□□□□□ -0.2
VPS53-206ENST00000570359 MYO5CQ9NQX4 1742 aa13.77□□□□□ -0.2
VPS53-206ENST00000570359 CCDC7Q96M83 1385 aa13.77□□□□□ -0.2
VPS53-206ENST00000570359 PLEKHH2Q8IVE3 1493 aa13.77□□□□□ -0.2
VPS53-206ENST00000570359 ARHGEF12Q9NZN5 1544 aa13.77□□□□□ -0.21
VPS53-206ENST00000570359 SUPT16HQ9Y5B9 1047 aaKnown RBP13.77□□□□□ -0.21
VPS53-206ENST00000570359 USP47Q96K76 1375 aa13.76□□□□□ -0.21
VPS53-206ENST00000570359 CCER2I3L3R5 266 aa13.75□□□□□ -0.21
VPS53-206ENST00000570359 TRAPPC8Q9Y2L5 1435 aa13.75□□□□□ -0.21
VPS53-206ENST00000570359 ARHGEF5Q12774 1597 aa13.75□□□□□ -0.21
VPS53-206ENST00000570359 FAM135AQ9P2D6 1515 aa13.74□□□□□ -0.21
VPS53-206ENST00000570359 SPAG9O60271 1321 aaKnown RBP13.74□□□□□ -0.21
VPS53-206ENST00000570359 RSPH4AQ5TD94 716 aa13.73□□□□□ -0.21
VPS53-206ENST00000570359 CNTLNQ9NXG0 1405 aa13.73□□□□□ -0.21
VPS53-206ENST00000570359 FKBP8Q14318 412 aa13.73□□□□□ -0.21
VPS53-206ENST00000570359 MRS2Q9HD23 443 aa13.72□□□□□ -0.21
VPS53-206ENST00000570359 CCDC144AA2RUR9 1427 aa13.72□□□□□ -0.21
VPS53-206ENST00000570359 ST20-MTHFSA0A0A6YYL1 179 aa13.71□□□□□ -0.21
VPS53-206ENST00000570359 PLCH2O75038 1416 aa13.71□□□□□ -0.21
VPS53-206ENST00000570359 NBPF1Q3BBV0 1214 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms