RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 MED1Q15648 1581 aaPredicted RBP19.87■□□□□ 0.77
CDH3-208ENST00000569036 HECW1Q76N89 1606 aa19.86■□□□□ 0.77
CDH3-208ENST00000569036 RAPGEF6Q8TEU7 1601 aa19.82■□□□□ 0.76
CDH3-208ENST00000569036 UBAP1LF5GYI3 381 aa19.79■□□□□ 0.76
CDH3-208ENST00000569036 C9orf84Q5VXU9 1444 aa19.78■□□□□ 0.76
CDH3-208ENST00000569036 ATP10AO60312 1499 aa19.78■□□□□ 0.76
CDH3-208ENST00000569036 NCOA1Q15788 1441 aa19.77■□□□□ 0.76
CDH3-208ENST00000569036 FAM9AQ8IZU1 332 aaPredicted RBP19.77■□□□□ 0.76
CDH3-208ENST00000569036 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.76■□□□□ 0.75
CDH3-208ENST00000569036 HNRNPUL2Q1KMD3 747 aaKnown RBP19.76■□□□□ 0.75
CDH3-208ENST00000569036 P3H3Q8IVL6 736 aa19.75■□□□□ 0.75
CDH3-208ENST00000569036 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.75■□□□□ 0.75
CDH3-208ENST00000569036 C3P01024 1663 aa19.75■□□□□ 0.75
CDH3-208ENST00000569036 NUP153P49790 1475 aaKnown RBP19.73■□□□□ 0.75
CDH3-208ENST00000569036 ZNF335Q9H4Z2 1342 aaPredicted RBP19.69■□□□□ 0.74
CDH3-208ENST00000569036 SAMD9Q5K651 1589 aa19.69■□□□□ 0.74
CDH3-208ENST00000569036 SCAPERQ9BY12 1400 aa19.68■□□□□ 0.74
CDH3-208ENST00000569036 CAMSAP1Q5T5Y3 1602 aa19.66■□□□□ 0.74
CDH3-208ENST00000569036 HSPA1LP34931 641 aa19.66■□□□□ 0.74
CDH3-208ENST00000569036 TRAPPC8Q9Y2L5 1435 aa19.64■□□□□ 0.73
CDH3-208ENST00000569036 PRXQ9BXM0 1461 aa19.63■□□□□ 0.73
CDH3-208ENST00000569036 PLEKHD1A6NEE1 506 aa19.63■□□□□ 0.73
CDH3-208ENST00000569036 PHF23Q9BUL5 403 aaPredicted RBP19.62■□□□□ 0.73
CDH3-208ENST00000569036 REREQ9P2R6 1566 aa19.58■□□□□ 0.73
CDH3-208ENST00000569036 DIP2CQ9Y2E4 1556 aa19.58■□□□□ 0.73
CDH3-208ENST00000569036 SCAF1Q9H7N4 1312 aaKnown RBP19.57■□□□□ 0.72
CDH3-208ENST00000569036 NCKAP5LQ9HCH0 1330 aa19.57■□□□□ 0.72
CDH3-208ENST00000569036 PLCH2O75038 1416 aa19.57■□□□□ 0.72
CDH3-208ENST00000569036 KDM5CP41229 1560 aa19.56■□□□□ 0.72
CDH3-208ENST00000569036 ZNF518AQ6AHZ1 1483 aa19.54■□□□□ 0.72
CDH3-208ENST00000569036 PIP4K2BP78356 416 aa19.54■□□□□ 0.72
CDH3-208ENST00000569036 AGLP35573 1532 aa19.53■□□□□ 0.72
CDH3-208ENST00000569036 ABCA6Q8N139 1617 aa19.52■□□□□ 0.72
CDH3-208ENST00000569036 MYO5CQ9NQX4 1742 aa19.51■□□□□ 0.71
CDH3-208ENST00000569036 PLA2R1Q13018 1463 aa19.5■□□□□ 0.71
CDH3-208ENST00000569036 ESF1Q9H501 851 aaKnown RBP19.5■□□□□ 0.71
CDH3-208ENST00000569036 NPATQ14207 1427 aa19.5■□□□□ 0.71
CDH3-208ENST00000569036 ZNF142P52746 1687 aaPredicted RBP19.49■□□□□ 0.71
CDH3-208ENST00000569036 CNTLNQ9NXG0 1405 aa19.49■□□□□ 0.71
CDH3-208ENST00000569036 TCOF1Q13428 1488 aaKnown RBP19.48■□□□□ 0.71
CDH3-208ENST00000569036 SUPT6HQ7KZ85 1726 aaKnown RBP19.48■□□□□ 0.71
CDH3-208ENST00000569036 MROH2AA6NES4 1674 aa19.47■□□□□ 0.71
CDH3-208ENST00000569036 TOM1O60784 492 aa19.46■□□□□ 0.71
CDH3-208ENST00000569036 PKD2Q13563 968 aa19.46■□□□□ 0.71
CDH3-208ENST00000569036 MYO3AQ8NEV4 1616 aa19.46■□□□□ 0.71
CDH3-208ENST00000569036 EFCAB2Q5VUJ9 269 aa19.45■□□□□ 0.7
CDH3-208ENST00000569036 AFAP1Q8N556 730 aa19.45■□□□□ 0.7
CDH3-208ENST00000569036 CDK13Q14004 1512 aaKnown RBP19.45■□□□□ 0.7
CDH3-208ENST00000569036 CEP170BQ9Y4F5 1589 aaPredicted RBP19.42■□□□□ 0.7
CDH3-208ENST00000569036 MYT1LQ9UL68 1186 aa19.42■□□□□ 0.7
CDH3-208ENST00000569036 PPP6R1Q9UPN7 881 aa19.42■□□□□ 0.7
CDH3-208ENST00000569036 ALKQ9UM73 1620 aa19.42■□□□□ 0.7
CDH3-208ENST00000569036 MLH3Q9UHC1 1453 aa19.41■□□□□ 0.7
CDH3-208ENST00000569036 CPS1P31327 1500 aa19.41■□□□□ 0.7
CDH3-208ENST00000569036 RGS17Q9UGC6 210 aaPredicted RBP19.39■□□□□ 0.69
CDH3-208ENST00000569036 ARHGAP5Q13017 1502 aa19.37■□□□□ 0.69
CDH3-208ENST00000569036 ZMYM3Q14202 1370 aa19.36■□□□□ 0.69
CDH3-208ENST00000569036 KIF14Q15058 1648 aa19.36■□□□□ 0.69
CDH3-208ENST00000569036 SHANK2Q9UPX8 1470 aa19.35■□□□□ 0.69
CDH3-208ENST00000569036 PTPRKQ15262 1439 aa19.34■□□□□ 0.69
CDH3-208ENST00000569036 KIDINS220Q9ULH0 1771 aa19.33■□□□□ 0.68
CDH3-208ENST00000569036 POLR1AO95602 1720 aaPredicted RBP19.33■□□□□ 0.68
CDH3-208ENST00000569036 RANGAP1P46060 587 aaPredicted RBP19.32■□□□□ 0.68
CDH3-208ENST00000569036 CLTCQ00610 1675 aaKnown RBP19.32■□□□□ 0.68
CDH3-208ENST00000569036 NEURL4Q96JN8 1562 aa19.31■□□□□ 0.68
CDH3-208ENST00000569036 SENP3Q9H4L4 574 aaPredicted RBP19.29■□□□□ 0.68
CDH3-208ENST00000569036 ITSN2Q9NZM3 1697 aa19.29■□□□□ 0.68
CDH3-208ENST00000569036 CDC42BPBQ9Y5S2 1711 aa19.28■□□□□ 0.68
CDH3-208ENST00000569036 ABCC1P33527 1531 aa19.28■□□□□ 0.68
CDH3-208ENST00000569036 DNMT1P26358 1616 aaKnown RBP19.27■□□□□ 0.68
CDH3-208ENST00000569036 VWDEQ8N2E2 1590 aa19.27■□□□□ 0.67
CDH3-208ENST00000569036 A2ML1A8K2U0 1454 aa19.25■□□□□ 0.67
CDH3-208ENST00000569036 SETD1AO15047 1707 aaKnown RBP19.25■□□□□ 0.67
CDH3-208ENST00000569036 POTEAQ6S8J7 498 aa19.23■□□□□ 0.67
CDH3-208ENST00000569036 PREX2Q70Z35 1606 aa19.21■□□□□ 0.67
CDH3-208ENST00000569036 RNF17Q9BXT8 1623 aaKnown RBP19.21■□□□□ 0.67
CDH3-208ENST00000569036 TROQ12816 1431 aaPredicted RBP19.19■□□□□ 0.66
CDH3-208ENST00000569036 SAMD9LQ8IVG5 1584 aa19.17■□□□□ 0.66
CDH3-208ENST00000569036 PLXNC1O60486 1568 aa19.16■□□□□ 0.66
CDH3-208ENST00000569036 CDK11AQ9UQ88 783 aaPredicted RBP19.16■□□□□ 0.66
CDH3-208ENST00000569036 STRCP1A6NGW2 1772 aa19.16■□□□□ 0.66
CDH3-208ENST00000569036 CLIP1P30622 1438 aa19.15■□□□□ 0.66
CDH3-208ENST00000569036 SRCAPQ6ZRS2 3230 aa19.15■□□□□ 0.66
CDH3-208ENST00000569036 CSRNP3Q8WYN3 585 aa19.14■□□□□ 0.65
CDH3-208ENST00000569036 LRRC7Q96NW7 1537 aa19.14■□□□□ 0.65
CDH3-208ENST00000569036 SYNMO15061 1565 aa19.14■□□□□ 0.65
CDH3-208ENST00000569036 ATP1B4Q9UN42 357 aaPredicted RBP19.12■□□□□ 0.65
CDH3-208ENST00000569036 DEPDC5O75140 1603 aa19.1■□□□□ 0.65
CDH3-208ENST00000569036 MED14O60244 1454 aa19.09■□□□□ 0.65
CDH3-208ENST00000569036 NPHP4O75161 1426 aaPredicted RBP19.09■□□□□ 0.65
CDH3-208ENST00000569036 LRRIQ1Q96JM4 1722 aa19.08■□□□□ 0.65
CDH3-208ENST00000569036 IQGAP1P46940 1657 aa19.08■□□□□ 0.65
CDH3-208ENST00000569036 ATP7AQ04656 1500 aa19.07■□□□□ 0.64
CDH3-208ENST00000569036 ANKLE2Q86XL3 938 aa19.07■□□□□ 0.64
CDH3-208ENST00000569036 CDC42BPAQ5VT25 1732 aa19.07■□□□□ 0.64
CDH3-208ENST00000569036 A2MP01023 1474 aa19.07■□□□□ 0.64
CDH3-208ENST00000569036 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.06■□□□□ 0.64
CDH3-208ENST00000569036 INO80Q9ULG1 1556 aaPredicted RBP19.06■□□□□ 0.64
CDH3-208ENST00000569036 GGT6Q6P531 493 aa19.06■□□□□ 0.64
CDH3-208ENST00000569036 FMN1Q68DA7 1419 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms