RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 PLEKHD1A6NEE1 506 aa20.2■□□□□ 0.82
CLK3-222ENST00000568232 ZMYM4Q5VZL5 1548 aa20.2■□□□□ 0.82
CLK3-222ENST00000568232 SAMD9Q5K651 1589 aa20.2■□□□□ 0.82
CLK3-222ENST00000568232 RANGAP1P46060 587 aaPredicted RBP20.19■□□□□ 0.82
CLK3-222ENST00000568232 TTC37Q6PGP7 1564 aa20.19■□□□□ 0.82
CLK3-222ENST00000568232 FER1L4A9Z1Z3 1794 aa20.18■□□□□ 0.82
CLK3-222ENST00000568232 EFCAB5A4FU69 1503 aa20.17■□□□□ 0.82
CLK3-222ENST00000568232 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.17■□□□□ 0.82
CLK3-222ENST00000568232 SPATA31D1Q6ZQQ2 1576 aa20.16■□□□□ 0.82
CLK3-222ENST00000568232 HECW1Q76N89 1606 aa20.16■□□□□ 0.82
CLK3-222ENST00000568232 DMRT2Q9Y5R5 561 aa20.15■□□□□ 0.82
CLK3-222ENST00000568232 CFAP74Q9C0B2 1584 aa20.14■□□□□ 0.81
CLK3-222ENST00000568232 MAGI2Q86UL8 1455 aa20.14■□□□□ 0.81
CLK3-222ENST00000568232 STRCQ7RTU9 1775 aa20.13■□□□□ 0.81
CLK3-222ENST00000568232 PREX1Q8TCU6 1659 aa20.13■□□□□ 0.81
CLK3-222ENST00000568232 ARHGEF12Q9NZN5 1544 aa20.12■□□□□ 0.81
CLK3-222ENST00000568232 SCAPERQ9BY12 1400 aa20.11■□□□□ 0.81
CLK3-222ENST00000568232 ATP10AO60312 1499 aa20.09■□□□□ 0.81
CLK3-222ENST00000568232 C9orf84Q5VXU9 1444 aa20.06■□□□□ 0.8
CLK3-222ENST00000568232 UHRF1BP1Q6BDS2 1440 aa20.06■□□□□ 0.8
CLK3-222ENST00000568232 PLCH2O75038 1416 aa20.04■□□□□ 0.8
CLK3-222ENST00000568232 CSRNP3Q8WYN3 585 aa20.04■□□□□ 0.8
CLK3-222ENST00000568232 PTPRTO14522 1441 aa20.02■□□□□ 0.79
CLK3-222ENST00000568232 LTBP4Q8N2S1 1624 aa20■□□□□ 0.79
CLK3-222ENST00000568232 CDK13Q14004 1512 aaKnown RBP20■□□□□ 0.79
CLK3-222ENST00000568232 EFCAB2Q5VUJ9 269 aa19.97■□□□□ 0.79
CLK3-222ENST00000568232 AFAP1Q8N556 730 aa19.97■□□□□ 0.79
CLK3-222ENST00000568232 MYT1LQ9UL68 1186 aa19.95■□□□□ 0.78
CLK3-222ENST00000568232 IQSEC2Q5JU85 1478 aa19.91■□□□□ 0.78
CLK3-222ENST00000568232 C3P01024 1663 aa19.91■□□□□ 0.78
CLK3-222ENST00000568232 SETD1BQ9UPS6 1966 aaKnown RBP19.9■□□□□ 0.78
CLK3-222ENST00000568232 ATP1B4Q9UN42 357 aaPredicted RBP19.9■□□□□ 0.78
CLK3-222ENST00000568232 ZNF518AQ6AHZ1 1483 aa19.9■□□□□ 0.78
CLK3-222ENST00000568232 NCOA1Q15788 1441 aa19.89■□□□□ 0.77
CLK3-222ENST00000568232 TRAPPC8Q9Y2L5 1435 aa19.88■□□□□ 0.77
CLK3-222ENST00000568232 ESF1Q9H501 851 aaKnown RBP19.88■□□□□ 0.77
CLK3-222ENST00000568232 DIP2CQ9Y2E4 1556 aa19.87■□□□□ 0.77
CLK3-222ENST00000568232 UBAP1LF5GYI3 381 aa19.87■□□□□ 0.77
CLK3-222ENST00000568232 KDM5CP41229 1560 aa19.87■□□□□ 0.77
CLK3-222ENST00000568232 MYO5CQ9NQX4 1742 aa19.86■□□□□ 0.77
CLK3-222ENST00000568232 ZNF335Q9H4Z2 1342 aaPredicted RBP19.85■□□□□ 0.77
CLK3-222ENST00000568232 KIF14Q15058 1648 aa19.84■□□□□ 0.77
CLK3-222ENST00000568232 NCKAP5LQ9HCH0 1330 aa19.84■□□□□ 0.77
CLK3-222ENST00000568232 ARHGAP5Q13017 1502 aa19.84■□□□□ 0.77
CLK3-222ENST00000568232 ABCA6Q8N139 1617 aa19.83■□□□□ 0.76
CLK3-222ENST00000568232 REREQ9P2R6 1566 aa19.82■□□□□ 0.76
CLK3-222ENST00000568232 CAMSAP1Q5T5Y3 1602 aa19.81■□□□□ 0.76
CLK3-222ENST00000568232 MLH3Q9UHC1 1453 aa19.79■□□□□ 0.76
CLK3-222ENST00000568232 CDK11AQ9UQ88 783 aaPredicted RBP19.79■□□□□ 0.76
CLK3-222ENST00000568232 AGLP35573 1532 aa19.78■□□□□ 0.76
CLK3-222ENST00000568232 TROQ12816 1431 aaPredicted RBP19.75■□□□□ 0.75
CLK3-222ENST00000568232 CNTLNQ9NXG0 1405 aa19.75■□□□□ 0.75
CLK3-222ENST00000568232 EHMT2Q96KQ7 1210 aa19.74■□□□□ 0.75
CLK3-222ENST00000568232 HSPA1LP34931 641 aa19.73■□□□□ 0.75
CLK3-222ENST00000568232 ZMYM3Q14202 1370 aa19.72■□□□□ 0.75
CLK3-222ENST00000568232 NPATQ14207 1427 aa19.72■□□□□ 0.75
CLK3-222ENST00000568232 EEA1Q15075 1411 aa19.72■□□□□ 0.75
CLK3-222ENST00000568232 FMN1Q68DA7 1419 aa19.71■□□□□ 0.75
CLK3-222ENST00000568232 SCAF1Q9H7N4 1312 aaKnown RBP19.71■□□□□ 0.75
CLK3-222ENST00000568232 CDC42BPBQ9Y5S2 1711 aa19.7■□□□□ 0.74
CLK3-222ENST00000568232 CLIP1P30622 1438 aa19.69■□□□□ 0.74
CLK3-222ENST00000568232 PIP4K2BP78356 416 aa19.69■□□□□ 0.74
CLK3-222ENST00000568232 PKD2Q13563 968 aa19.69■□□□□ 0.74
CLK3-222ENST00000568232 MED1Q15648 1581 aaPredicted RBP19.69■□□□□ 0.74
CLK3-222ENST00000568232 KIDINS220Q9ULH0 1771 aa19.68■□□□□ 0.74
CLK3-222ENST00000568232 ABCC1P33527 1531 aa19.68■□□□□ 0.74
CLK3-222ENST00000568232 ARHGAP35Q9NRY4 1499 aa19.66■□□□□ 0.74
CLK3-222ENST00000568232 TCOF1Q13428 1488 aaKnown RBP19.65■□□□□ 0.74
CLK3-222ENST00000568232 ITSN2Q9NZM3 1697 aa19.65■□□□□ 0.74
CLK3-222ENST00000568232 UBTFP17480 764 aaKnown RBP19.64■□□□□ 0.73
CLK3-222ENST00000568232 PLA2R1Q13018 1463 aa19.64■□□□□ 0.73
CLK3-222ENST00000568232 MROH2AA6NES4 1674 aa19.64■□□□□ 0.73
CLK3-222ENST00000568232 PREX2Q70Z35 1606 aa19.62■□□□□ 0.73
CLK3-222ENST00000568232 LRRIQ1Q96JM4 1722 aa19.62■□□□□ 0.73
CLK3-222ENST00000568232 MYO3AQ8NEV4 1616 aa19.62■□□□□ 0.73
CLK3-222ENST00000568232 CEP170BQ9Y4F5 1589 aaPredicted RBP19.61■□□□□ 0.73
CLK3-222ENST00000568232 PTPRKQ15262 1439 aa19.6■□□□□ 0.73
CLK3-222ENST00000568232 ZNF777Q9ULD5 760 aaPredicted RBP19.6■□□□□ 0.73
CLK3-222ENST00000568232 CLTCQ00610 1675 aaKnown RBP19.59■□□□□ 0.73
CLK3-222ENST00000568232 SAMD9LQ8IVG5 1584 aa19.59■□□□□ 0.73
CLK3-222ENST00000568232 ZNF142P52746 1687 aaPredicted RBP19.59■□□□□ 0.73
CLK3-222ENST00000568232 TOM1O60784 492 aa19.58■□□□□ 0.72
CLK3-222ENST00000568232 MAPK8IP2Q13387 824 aaPredicted RBP19.58■□□□□ 0.72
CLK3-222ENST00000568232 SUPT6HQ7KZ85 1726 aaKnown RBP19.58■□□□□ 0.72
CLK3-222ENST00000568232 SPAG9O60271 1321 aaKnown RBP19.57■□□□□ 0.72
CLK3-222ENST00000568232 HNRNPMP52272 730 aaKnown RBP eCLIP19.57■□□□□ 0.72
CLK3-222ENST00000568232 GGT6Q6P531 493 aa19.57■□□□□ 0.72
CLK3-222ENST00000568232 SYCP2Q9BX26 1530 aa19.52■□□□□ 0.72
CLK3-222ENST00000568232 CDC42BPAQ5VT25 1732 aa19.52■□□□□ 0.72
CLK3-222ENST00000568232 A2MP01023 1474 aa19.5■□□□□ 0.71
CLK3-222ENST00000568232 SHANK2Q9UPX8 1470 aa19.5■□□□□ 0.71
CLK3-222ENST00000568232 DNMT1P26358 1616 aaKnown RBP19.5■□□□□ 0.71
CLK3-222ENST00000568232 A2ML1A8K2U0 1454 aa19.49■□□□□ 0.71
CLK3-222ENST00000568232 CPS1P31327 1500 aa19.49■□□□□ 0.71
CLK3-222ENST00000568232 ATP7AQ04656 1500 aa19.49■□□□□ 0.71
CLK3-222ENST00000568232 PLXNC1O60486 1568 aa19.49■□□□□ 0.71
CLK3-222ENST00000568232 NEURL4Q96JN8 1562 aa19.47■□□□□ 0.71
CLK3-222ENST00000568232 ALKQ9UM73 1620 aa19.47■□□□□ 0.71
CLK3-222ENST00000568232 FBXO31Q5XUX0 539 aaPredicted RBP19.46■□□□□ 0.71
CLK3-222ENST00000568232 CCDC18Q5T9S5 1454 aa19.46■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms