RNA–Protein interactions for RNA: ENST00000568038.1

SMG1-214, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 1,210 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-214ENST00000568038 BCL11BQ9C0K0 894 aaPredicted RBP13.53□□□□□ -0.24
SMG1-214ENST00000568038 G3V3G9 751 aa13.52□□□□□ -0.25
SMG1-214ENST00000568038 STK24Q9Y6E0 443 aa13.52□□□□□ -0.25
SMG1-214ENST00000568038 ILDR1Q86SU0 546 aaPredicted RBP13.51□□□□□ -0.25
SMG1-214ENST00000568038 STK25O00506 426 aa13.5□□□□□ -0.25
SMG1-214ENST00000568038 SOX12O15370 315 aa13.46□□□□□ -0.25
SMG1-214ENST00000568038 PHF8Q9UPP1 1060 aa13.46□□□□□ -0.25
SMG1-214ENST00000568038 BOLA1Q9Y3E2 137 aa13.46□□□□□ -0.25
SMG1-214ENST00000568038 POTEMA6NI47 508 aa13.45□□□□□ -0.26
SMG1-214ENST00000568038 POTEGQ6S5H5 508 aa13.43□□□□□ -0.26
SMG1-214ENST00000568038 LCE2DQ5TA82 110 aaPredicted RBP13.41□□□□□ -0.26
SMG1-214ENST00000568038 CADPSQ9ULU8 1353 aa13.41□□□□□ -0.26
SMG1-214ENST00000568038 NESP48681 1621 aa13.4□□□□□ -0.26
SMG1-214ENST00000568038 MS4A4AQ96JQ5 239 aa13.39□□□□□ -0.27
SMG1-214ENST00000568038 NLRP6P59044 892 aa13.37□□□□□ -0.27
SMG1-214ENST00000568038 CFTRP13569 1480 aa13.36□□□□□ -0.27
SMG1-214ENST00000568038 ST18O60284 1047 aa13.35□□□□□ -0.27
SMG1-214ENST00000568038 LAMC3Q9Y6N6 1575 aa13.34□□□□□ -0.27
SMG1-214ENST00000568038 SNPHO15079 494 aa13.34□□□□□ -0.27
SMG1-214ENST00000568038 MICALL2Q8IY33 904 aa13.33□□□□□ -0.28
SMG1-214ENST00000568038 MFRPQ9BY79 579 aa13.32□□□□□ -0.28
SMG1-214ENST00000568038 FBXO22Q8NEZ5 403 aa13.31□□□□□ -0.28
SMG1-214ENST00000568038 TMEM121BQ9BXQ6 578 aaPredicted RBP13.3□□□□□ -0.28
SMG1-214ENST00000568038 CHGAP10645 457 aaKnown RBP13.28□□□□□ -0.28
SMG1-214ENST00000568038 PDS5BQ9NTI5 1447 aa13.28□□□□□ -0.28
SMG1-214ENST00000568038 FANCD2Q9BXW9 1451 aa13.26□□□□□ -0.29
SMG1-214ENST00000568038 PRDM2Q13029 1718 aa13.25□□□□□ -0.29
SMG1-214ENST00000568038 ERCC6Q03468 1493 aa13.24□□□□□ -0.29
SMG1-214ENST00000568038 TMEM92Q6UXU6 159 aa13.21□□□□□ -0.29
SMG1-214ENST00000568038 HS6ST3Q8IZP7 471 aa13.21□□□□□ -0.29
SMG1-214ENST00000568038 MARVELD3Q96A59 401 aa13.21□□□□□ -0.29
SMG1-214ENST00000568038 CEP164Q9UPV0 1460 aa13.21□□□□□ -0.3
SMG1-214ENST00000568038 KIF21AQ7Z4S6 1674 aa13.21□□□□□ -0.3
SMG1-214ENST00000568038 PLSCR2Q9NRY7 297 aa13.19□□□□□ -0.3
SMG1-214ENST00000568038 PPP1R37O75864 691 aa13.15□□□□□ -0.3
SMG1-214ENST00000568038 ZNF710Q8N1W2 664 aa13.15□□□□□ -0.3
SMG1-214ENST00000568038 ABCC8Q09428 1581 aa13.15□□□□□ -0.3
SMG1-214ENST00000568038 HOXB3P14651 431 aaPredicted RBP13.14□□□□□ -0.31
SMG1-214ENST00000568038 PCDH10Q9P2E7 1040 aa13.13□□□□□ -0.31
SMG1-214ENST00000568038 MRC2Q9UBG0 1479 aa13.12□□□□□ -0.31
SMG1-214ENST00000568038 DOK7Q18PE1 504 aa13.12□□□□□ -0.31
SMG1-214ENST00000568038 CDAN1Q8IWY9 1227 aa13.12□□□□□ -0.31
SMG1-214ENST00000568038 EMP3P54852 163 aa13.11□□□□□ -0.31
SMG1-214ENST00000568038 URB2Q14146 1524 aaKnown RBP13.11□□□□□ -0.31
SMG1-214ENST00000568038 WRNQ14191 1432 aaPredicted RBP eCLIP13.11□□□□□ -0.31
SMG1-214ENST00000568038 CUX1P39880 1505 aa13.08□□□□□ -0.32
SMG1-214ENST00000568038 THOC2Q8NI27 1593 aaKnown RBP13.07□□□□□ -0.32
SMG1-214ENST00000568038 TOPBP1Q92547 1522 aa13.07□□□□□ -0.32
SMG1-214ENST00000568038 RIMBP2O15034 1052 aa13.06□□□□□ -0.32
SMG1-214ENST00000568038 NKX1-1Q15270 411 aaPredicted RBP13.06□□□□□ -0.32
SMG1-214ENST00000568038 DNMBPQ6XZF7 1577 aa13.06□□□□□ -0.32
SMG1-214ENST00000568038 C2orf72A6NCS6 295 aa13.05□□□□□ -0.32
SMG1-214ENST00000568038 FAM205CA6NFA0 338 aa13.05□□□□□ -0.32
SMG1-214ENST00000568038 SYNJ1O43426 1573 aa13.05□□□□□ -0.32
SMG1-214ENST00000568038 WDR62O43379 1518 aa13.04□□□□□ -0.32
SMG1-214ENST00000568038 TMC2Q8TDI7 906 aa13.03□□□□□ -0.32
SMG1-214ENST00000568038 TOP2BQ02880 1626 aa13.02□□□□□ -0.33
SMG1-214ENST00000568038 HOXB1P14653 301 aaPredicted RBP13.01□□□□□ -0.33
SMG1-214ENST00000568038 FGD5Q6ZNL6 1462 aa13□□□□□ -0.33
SMG1-214ENST00000568038 BIVM-ERCC5R4GMW8 1640 aa12.99□□□□□ -0.33
SMG1-214ENST00000568038 HS3ST6Q96QI5 342 aa12.99□□□□□ -0.33
SMG1-214ENST00000568038 KIF3CO14782 793 aa12.98□□□□□ -0.33
SMG1-214ENST00000568038 DNAJC5Q9H3Z4 198 aa12.98□□□□□ -0.33
SMG1-214ENST00000568038 POLA1P09884 1462 aaPredicted RBP12.97□□□□□ -0.33
SMG1-214ENST00000568038 ERBB3P21860 1342 aa12.97□□□□□ -0.33
SMG1-214ENST00000568038 POTEB3A0JP26 581 aa12.97□□□□□ -0.33
SMG1-214ENST00000568038 POTEBQ6S5H4 581 aa12.97□□□□□ -0.33
SMG1-214ENST00000568038 ARSIQ5FYB1 569 aa12.96□□□□□ -0.33
SMG1-214ENST00000568038 SOGA1O94964 1423 aa12.96□□□□□ -0.34
SMG1-214ENST00000568038 RYDENQ9NUL5 291 aaKnown RBP12.95□□□□□ -0.34
SMG1-214ENST00000568038 CUX2O14529 1486 aa12.95□□□□□ -0.34
SMG1-214ENST00000568038 RAD54L2Q9Y4B4 1467 aa12.95□□□□□ -0.34
SMG1-214ENST00000568038 ZSWIM6Q9HCJ5 1215 aa12.94□□□□□ -0.34
SMG1-214ENST00000568038 GPR153Q6NV75 609 aa12.93□□□□□ -0.34
SMG1-214ENST00000568038 KHSRPQ92945 711 aaKnown RBP eCLIP12.93□□□□□ -0.34
SMG1-214ENST00000568038 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
SMG1-214ENST00000568038 GTPBP6O43824 516 aaPredicted RBP12.89□□□□□ -0.35
SMG1-214ENST00000568038 AMER1Q5JTC6 1135 aaPredicted RBP12.89□□□□□ -0.35
SMG1-214ENST00000568038 VARS2Q5ST30 1063 aaKnown RBP12.89□□□□□ -0.35
SMG1-214ENST00000568038 RTN4Q9NQC3 1192 aaKnown RBP12.88□□□□□ -0.35
SMG1-214ENST00000568038 TARBP1Q13395 1621 aaKnown RBP12.88□□□□□ -0.35
SMG1-214ENST00000568038 TDRD9Q8NDG6 1382 aaKnown RBP12.87□□□□□ -0.35
SMG1-214ENST00000568038 ABCA10Q8WWZ4 1543 aa12.86□□□□□ -0.35
SMG1-214ENST00000568038 ZNF608Q9ULD9 1512 aaPredicted RBP12.86□□□□□ -0.35
SMG1-214ENST00000568038 PLPP6Q8IY26 295 aa12.85□□□□□ -0.35
SMG1-214ENST00000568038 GPHNQ9NQX3 736 aaPredicted RBP12.84□□□□□ -0.35
SMG1-214ENST00000568038 AQRO60306 1485 aaKnown RBP eCLIP12.84□□□□□ -0.351e-6■■■■■ 27.8
SMG1-214ENST00000568038 NUDT7P0C024 238 aa12.83□□□□□ -0.36
SMG1-214ENST00000568038 PCDHGA4Q9Y5G9 962 aa12.83□□□□□ -0.36
SMG1-214ENST00000568038 WDR97A6NE52 1622 aa12.82□□□□□ -0.36
SMG1-214ENST00000568038 DSG2Q14126 1118 aa12.82□□□□□ -0.36
SMG1-214ENST00000568038 FAM9AQ8IZU1 332 aaPredicted RBP12.82□□□□□ -0.36
SMG1-214ENST00000568038 RUSC2Q8N2Y8 1516 aa12.82□□□□□ -0.36
SMG1-214ENST00000568038 FOXK1P85037 733 aa12.81□□□□□ -0.36
SMG1-214ENST00000568038 KIF27Q86VH2 1401 aa12.8□□□□□ -0.36
SMG1-214ENST00000568038 KRTAP3-3Q9BYR6 98 aa12.8□□□□□ -0.36
SMG1-214ENST00000568038 KRTAP3-2Q9BYR7 98 aa12.8□□□□□ -0.36
SMG1-214ENST00000568038 GAPVD1Q14C86 1478 aa12.79□□□□□ -0.36
SMG1-214ENST00000568038 SLC34A2O95436 690 aa12.79□□□□□ -0.36
SMG1-214ENST00000568038 EIF4G3O43432 1585 aaKnown RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms