RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-231ENST00000561395 ATP10BO94823 1461 aa11.83□□□□□ -0.52
TPM1-231ENST00000561395 ARHGAP35Q9NRY4 1499 aa11.83□□□□□ -0.52
TPM1-231ENST00000561395 EFCAB5A4FU69 1503 aa11.81□□□□□ -0.52
TPM1-231ENST00000561395 ZMYM4Q5VZL5 1548 aa11.81□□□□□ -0.52
TPM1-231ENST00000561395 RAPGEF6Q8TEU7 1601 aa11.81□□□□□ -0.52
TPM1-231ENST00000561395 POGZQ7Z3K3 1410 aa11.8□□□□□ -0.52
TPM1-231ENST00000561395 ARID3CA6NKF2 412 aa11.8□□□□□ -0.52
TPM1-231ENST00000561395 ZFYVE16Q7Z3T8 1539 aa11.8□□□□□ -0.52
TPM1-231ENST00000561395 DENND4BO75064 1496 aaPredicted RBP11.78□□□□□ -0.52
TPM1-231ENST00000561395 RANGAP1P46060 587 aaPredicted RBP11.78□□□□□ -0.52
TPM1-231ENST00000561395 SAMD9Q5K651 1589 aa11.78□□□□□ -0.52
TPM1-231ENST00000561395 AKNAQ7Z591 1439 aa11.77□□□□□ -0.52
TPM1-231ENST00000561395 SETD1BQ9UPS6 1966 aaKnown RBP11.77□□□□□ -0.53
TPM1-231ENST00000561395 FHOD3Q2V2M9 1422 aa11.76□□□□□ -0.53
TPM1-231ENST00000561395 HECW1Q76N89 1606 aa11.75□□□□□ -0.53
TPM1-231ENST00000561395 YEATS2Q9ULM3 1422 aa11.75□□□□□ -0.53
TPM1-231ENST00000561395 ARHGEF12Q9NZN5 1544 aa11.75□□□□□ -0.53
TPM1-231ENST00000561395 MAGI2Q86UL8 1455 aa11.71□□□□□ -0.53
TPM1-231ENST00000561395 C3P01024 1663 aa11.71□□□□□ -0.54
TPM1-231ENST00000561395 LTBP4Q8N2S1 1624 aa11.71□□□□□ -0.54
TPM1-231ENST00000561395 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.7□□□□□ -0.54
TPM1-231ENST00000561395 MLECQ14165 292 aa11.7□□□□□ -0.54
TPM1-231ENST00000561395 NUP153P49790 1475 aaKnown RBP11.7□□□□□ -0.54
TPM1-231ENST00000561395 IQSEC2Q5JU85 1478 aa11.7□□□□□ -0.54
TPM1-231ENST00000561395 TRIM26Q12899 539 aaPredicted RBP11.69□□□□□ -0.54
TPM1-231ENST00000561395 DMRT2Q9Y5R5 561 aa11.69□□□□□ -0.54
TPM1-231ENST00000561395 UHRF1BP1Q6BDS2 1440 aa11.69□□□□□ -0.54
TPM1-231ENST00000561395 P3H3Q8IVL6 736 aa11.68□□□□□ -0.54
TPM1-231ENST00000561395 MYO5CQ9NQX4 1742 aa11.68□□□□□ -0.54
TPM1-231ENST00000561395 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.67□□□□□ -0.54
TPM1-231ENST00000561395 HNRNPUL2Q1KMD3 747 aaKnown RBP11.67□□□□□ -0.54
TPM1-231ENST00000561395 FYCO1Q9BQS8 1478 aa11.67□□□□□ -0.54
TPM1-231ENST00000561395 PTPRTO14522 1441 aa11.67□□□□□ -0.54
TPM1-231ENST00000561395 PPARGC1BQ86YN6 1023 aaKnown RBP11.66□□□□□ -0.54
TPM1-231ENST00000561395 PCGF6Q9BYE7 350 aa11.66□□□□□ -0.54
TPM1-231ENST00000561395 C9orf84Q5VXU9 1444 aa11.66□□□□□ -0.54
TPM1-231ENST00000561395 FMN1Q68DA7 1419 aa11.66□□□□□ -0.54
TPM1-231ENST00000561395 MAP3K1Q13233 1512 aa11.65□□□□□ -0.54
TPM1-231ENST00000561395 TIAM1Q13009 1591 aa11.65□□□□□ -0.54
TPM1-231ENST00000561395 SUPT6HQ7KZ85 1726 aaKnown RBP11.65□□□□□ -0.54
TPM1-231ENST00000561395 ATP10AO60312 1499 aa11.64□□□□□ -0.55
TPM1-231ENST00000561395 CASKIN1Q8WXD9 1431 aa11.64□□□□□ -0.55
TPM1-231ENST00000561395 CEBPAP49715 358 aaPredicted RBP11.63□□□□□ -0.55
TPM1-231ENST00000561395 APLP2Q06481 763 aa11.63□□□□□ -0.55
TPM1-231ENST00000561395 LRRIQ1Q96JM4 1722 aa11.61□□□□□ -0.55
TPM1-231ENST00000561395 MED1Q15648 1581 aaPredicted RBP11.61□□□□□ -0.55
TPM1-231ENST00000561395 SCAF1Q9H7N4 1312 aaKnown RBP11.6□□□□□ -0.55
TPM1-231ENST00000561395 SCAPERQ9BY12 1400 aa11.6□□□□□ -0.55
TPM1-231ENST00000561395 DIP2CQ9Y2E4 1556 aa11.6□□□□□ -0.55
TPM1-231ENST00000561395 ABCA6Q8N139 1617 aa11.6□□□□□ -0.55
TPM1-231ENST00000561395 KDM5CP41229 1560 aa11.59□□□□□ -0.55
TPM1-231ENST00000561395 REREQ9P2R6 1566 aa11.59□□□□□ -0.55
TPM1-231ENST00000561395 MAPK8IP2Q13387 824 aaPredicted RBP11.59□□□□□ -0.55
TPM1-231ENST00000561395 NCOA1Q15788 1441 aa11.59□□□□□ -0.55
TPM1-231ENST00000561395 PLEKHD1A6NEE1 506 aa11.58□□□□□ -0.56
TPM1-231ENST00000561395 CAMSAP1Q5T5Y3 1602 aa11.57□□□□□ -0.56
TPM1-231ENST00000561395 CDK13Q14004 1512 aaKnown RBP11.57□□□□□ -0.56
TPM1-231ENST00000561395 MROH2AA6NES4 1674 aa11.57□□□□□ -0.56
TPM1-231ENST00000561395 LRRC9Q6ZRR7 1453 aa11.57□□□□□ -0.56
TPM1-231ENST00000561395 ZNF142P52746 1687 aaPredicted RBP11.56□□□□□ -0.56
TPM1-231ENST00000561395 PLCH2O75038 1416 aa11.56□□□□□ -0.56
TPM1-231ENST00000561395 NCBP3Q53F19 620 aaKnown RBP11.56□□□□□ -0.56
TPM1-231ENST00000561395 ZNF518AQ6AHZ1 1483 aa11.56□□□□□ -0.56
TPM1-231ENST00000561395 KANK4Q5T7N3 995 aaPredicted RBP11.55□□□□□ -0.56
TPM1-231ENST00000561395 KIF14Q15058 1648 aa11.54□□□□□ -0.56
TPM1-231ENST00000561395 CCDC18Q5T9S5 1454 aa11.54□□□□□ -0.56
TPM1-231ENST00000561395 MYO3AQ8NEV4 1616 aa11.53□□□□□ -0.56
TPM1-231ENST00000561395 CDC42BPBQ9Y5S2 1711 aa11.53□□□□□ -0.56
TPM1-231ENST00000561395 AGLP35573 1532 aa11.53□□□□□ -0.56
TPM1-231ENST00000561395 ITSN2Q9NZM3 1697 aa11.52□□□□□ -0.56
TPM1-231ENST00000561395 TRAPPC8Q9Y2L5 1435 aa11.52□□□□□ -0.56
TPM1-231ENST00000561395 UBAP1LF5GYI3 381 aa11.52□□□□□ -0.57
TPM1-231ENST00000561395 KIDINS220Q9ULH0 1771 aa11.51□□□□□ -0.57
TPM1-231ENST00000561395 ARHGAP5Q13017 1502 aa11.5□□□□□ -0.57
TPM1-231ENST00000561395 EHBP1L1Q8N3D4 1523 aa11.5□□□□□ -0.57
TPM1-231ENST00000561395 POLR1AO95602 1720 aaPredicted RBP11.5□□□□□ -0.57
TPM1-231ENST00000561395 ATP1B4Q9UN42 357 aaPredicted RBP11.5□□□□□ -0.57
TPM1-231ENST00000561395 ZNF335Q9H4Z2 1342 aaPredicted RBP11.5□□□□□ -0.57
TPM1-231ENST00000561395 CLTCQ00610 1675 aaKnown RBP11.49□□□□□ -0.57
TPM1-231ENST00000561395 CNTLNQ9NXG0 1405 aa11.48□□□□□ -0.57
TPM1-231ENST00000561395 PREX2Q70Z35 1606 aa11.48□□□□□ -0.57
TPM1-231ENST00000561395 CEP170BQ9Y4F5 1589 aaPredicted RBP11.47□□□□□ -0.57
TPM1-231ENST00000561395 MLH3Q9UHC1 1453 aa11.47□□□□□ -0.57
TPM1-231ENST00000561395 RRBP1Q9P2E9 1410 aaKnown RBP11.47□□□□□ -0.57
TPM1-231ENST00000561395 EFCAB2Q5VUJ9 269 aa11.47□□□□□ -0.57
TPM1-231ENST00000561395 CNKSR2Q8WXI2 1034 aa11.47□□□□□ -0.57
TPM1-231ENST00000561395 ABCC1P33527 1531 aa11.46□□□□□ -0.57
TPM1-231ENST00000561395 PLA2R1Q13018 1463 aa11.46□□□□□ -0.57
TPM1-231ENST00000561395 NPATQ14207 1427 aa11.46□□□□□ -0.57
TPM1-231ENST00000561395 NPM3O75607 178 aaKnown RBP11.46□□□□□ -0.57
TPM1-231ENST00000561395 ESF1Q9H501 851 aaKnown RBP11.46□□□□□ -0.57
TPM1-231ENST00000561395 MYT1LQ9UL68 1186 aa11.46□□□□□ -0.57
TPM1-231ENST00000561395 MTUS2Q5JR59 1369 aa11.45□□□□□ -0.58
TPM1-231ENST00000561395 AFAP1Q8N556 730 aa11.45□□□□□ -0.58
TPM1-231ENST00000561395 TCOF1Q13428 1488 aaKnown RBP11.44□□□□□ -0.58
TPM1-231ENST00000561395 NCKAP5LQ9HCH0 1330 aa11.44□□□□□ -0.58
TPM1-231ENST00000561395 CDC42BPAQ5VT25 1732 aa11.43□□□□□ -0.58
TPM1-231ENST00000561395 HSPA1LP34931 641 aa11.43□□□□□ -0.58
TPM1-231ENST00000561395 CCNB3Q8WWL7 1395 aa11.42□□□□□ -0.58
TPM1-231ENST00000561395 NCOA2Q15596 1464 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms