RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 RAPGEF6Q8TEU7 1601 aa16.55■□□□□ 0.24
HERC1-210ENST00000560897 PTPRTO14522 1441 aa16.53■□□□□ 0.24
HERC1-210ENST00000560897 ARHGEF12Q9NZN5 1544 aa16.52■□□□□ 0.24
HERC1-210ENST00000560897 SETD1BQ9UPS6 1966 aaKnown RBP16.52■□□□□ 0.24
HERC1-210ENST00000560897 CEBPAP49715 358 aaPredicted RBP16.51■□□□□ 0.23
HERC1-210ENST00000560897 HECW1Q76N89 1606 aa16.5■□□□□ 0.23
HERC1-210ENST00000560897 SENP3Q9H4L4 574 aaPredicted RBP16.5■□□□□ 0.23
HERC1-210ENST00000560897 C9orf84Q5VXU9 1444 aa16.48■□□□□ 0.23
HERC1-210ENST00000560897 PLEKHD1A6NEE1 506 aa16.48■□□□□ 0.23
HERC1-210ENST00000560897 LTBP4Q8N2S1 1624 aa16.47■□□□□ 0.23
HERC1-210ENST00000560897 ATP10AO60312 1499 aa16.47■□□□□ 0.23
HERC1-210ENST00000560897 UBAP1LF5GYI3 381 aa16.45■□□□□ 0.22
HERC1-210ENST00000560897 PHF23Q9BUL5 403 aaPredicted RBP16.45■□□□□ 0.22
HERC1-210ENST00000560897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.44■□□□□ 0.22
HERC1-210ENST00000560897 NUP153P49790 1475 aaKnown RBP16.43■□□□□ 0.22
HERC1-210ENST00000560897 SCAPERQ9BY12 1400 aa16.42■□□□□ 0.22
HERC1-210ENST00000560897 SAMD9Q5K651 1589 aa16.42■□□□□ 0.22
HERC1-210ENST00000560897 ESF1Q9H501 851 aaKnown RBP16.41■□□□□ 0.22
HERC1-210ENST00000560897 PRXQ9BXM0 1461 aa16.41■□□□□ 0.22
HERC1-210ENST00000560897 MYT1LQ9UL68 1186 aa16.38■□□□□ 0.21
HERC1-210ENST00000560897 NCOA1Q15788 1441 aa16.37■□□□□ 0.21
HERC1-210ENST00000560897 C3P01024 1663 aa16.37■□□□□ 0.21
HERC1-210ENST00000560897 MED1Q15648 1581 aaPredicted RBP16.36■□□□□ 0.21
HERC1-210ENST00000560897 SCAF1Q9H7N4 1312 aaKnown RBP16.34■□□□□ 0.21
HERC1-210ENST00000560897 TRAPPC8Q9Y2L5 1435 aa16.34■□□□□ 0.21
HERC1-210ENST00000560897 PLCH2O75038 1416 aa16.33■□□□□ 0.2
HERC1-210ENST00000560897 CAMSAP1Q5T5Y3 1602 aa16.31■□□□□ 0.2
HERC1-210ENST00000560897 ZNF518AQ6AHZ1 1483 aa16.31■□□□□ 0.2
HERC1-210ENST00000560897 ZNF335Q9H4Z2 1342 aaPredicted RBP16.31■□□□□ 0.2
HERC1-210ENST00000560897 EFCAB2Q5VUJ9 269 aa16.31■□□□□ 0.2
HERC1-210ENST00000560897 RANGAP1P46060 587 aaPredicted RBP16.3■□□□□ 0.2
HERC1-210ENST00000560897 MYO5CQ9NQX4 1742 aa16.29■□□□□ 0.2
HERC1-210ENST00000560897 CNTLNQ9NXG0 1405 aa16.27■□□□□ 0.19
HERC1-210ENST00000560897 REREQ9P2R6 1566 aa16.26■□□□□ 0.19
HERC1-210ENST00000560897 HSPA1LP34931 641 aa16.26■□□□□ 0.19
HERC1-210ENST00000560897 DIP2CQ9Y2E4 1556 aa16.26■□□□□ 0.19
HERC1-210ENST00000560897 NCKAP5LQ9HCH0 1330 aa16.25■□□□□ 0.19
HERC1-210ENST00000560897 PIP4K2BP78356 416 aa16.25■□□□□ 0.19
HERC1-210ENST00000560897 KDM5CP41229 1560 aa16.25■□□□□ 0.19
HERC1-210ENST00000560897 AGLP35573 1532 aa16.24■□□□□ 0.19
HERC1-210ENST00000560897 TOM1O60784 492 aa16.23■□□□□ 0.19
HERC1-210ENST00000560897 PKD2Q13563 968 aa16.23■□□□□ 0.19
HERC1-210ENST00000560897 AFAP1Q8N556 730 aa16.23■□□□□ 0.19
HERC1-210ENST00000560897 SUPT6HQ7KZ85 1726 aaKnown RBP16.22■□□□□ 0.19
HERC1-210ENST00000560897 NPATQ14207 1427 aa16.22■□□□□ 0.19
HERC1-210ENST00000560897 ARHGAP5Q13017 1502 aa16.22■□□□□ 0.19
HERC1-210ENST00000560897 CDK13Q14004 1512 aaKnown RBP16.22■□□□□ 0.19
HERC1-210ENST00000560897 ABCA6Q8N139 1617 aa16.21■□□□□ 0.19
HERC1-210ENST00000560897 PLA2R1Q13018 1463 aa16.19■□□□□ 0.18
HERC1-210ENST00000560897 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
HERC1-210ENST00000560897 MROH2AA6NES4 1674 aa16.18■□□□□ 0.18
HERC1-210ENST00000560897 MLH3Q9UHC1 1453 aa16.17■□□□□ 0.18
HERC1-210ENST00000560897 KIF14Q15058 1648 aa16.17■□□□□ 0.18
HERC1-210ENST00000560897 CDK11AQ9UQ88 783 aaPredicted RBP16.17■□□□□ 0.18
HERC1-210ENST00000560897 ATP1B4Q9UN42 357 aaPredicted RBP16.16■□□□□ 0.18
HERC1-210ENST00000560897 ZNF142P52746 1687 aaPredicted RBP16.15■□□□□ 0.18
HERC1-210ENST00000560897 MYO3AQ8NEV4 1616 aa16.15■□□□□ 0.18
HERC1-210ENST00000560897 ZMYM3Q14202 1370 aa16.13■□□□□ 0.17
HERC1-210ENST00000560897 CEP170BQ9Y4F5 1589 aaPredicted RBP16.13■□□□□ 0.17
HERC1-210ENST00000560897 CSRNP3Q8WYN3 585 aa16.13■□□□□ 0.17
HERC1-210ENST00000560897 TCOF1Q13428 1488 aaKnown RBP16.13■□□□□ 0.17
HERC1-210ENST00000560897 CPS1P31327 1500 aa16.13■□□□□ 0.17
HERC1-210ENST00000560897 CLIP1P30622 1438 aa16.11■□□□□ 0.17
HERC1-210ENST00000560897 PTPRKQ15262 1439 aa16.11■□□□□ 0.17
HERC1-210ENST00000560897 TROQ12816 1431 aaPredicted RBP16.07■□□□□ 0.16
HERC1-210ENST00000560897 ABCC1P33527 1531 aa16.07■□□□□ 0.16
HERC1-210ENST00000560897 CLTCQ00610 1675 aaKnown RBP16.07■□□□□ 0.16
HERC1-210ENST00000560897 ITSN2Q9NZM3 1697 aa16.07■□□□□ 0.16
HERC1-210ENST00000560897 KIDINS220Q9ULH0 1771 aa16.07■□□□□ 0.16
HERC1-210ENST00000560897 CDC42BPBQ9Y5S2 1711 aa16.05■□□□□ 0.16
HERC1-210ENST00000560897 SHANK2Q9UPX8 1470 aa16.05■□□□□ 0.16
HERC1-210ENST00000560897 POLR1AO95602 1720 aaPredicted RBP16.04■□□□□ 0.16
HERC1-210ENST00000560897 FMN1Q68DA7 1419 aa16.03■□□□□ 0.16
HERC1-210ENST00000560897 PREX2Q70Z35 1606 aa16.02■□□□□ 0.16
HERC1-210ENST00000560897 A2ML1A8K2U0 1454 aa16.01■□□□□ 0.15
HERC1-210ENST00000560897 DNMT1P26358 1616 aaKnown RBP15.99■□□□□ 0.15
HERC1-210ENST00000560897 SPAG9O60271 1321 aaKnown RBP15.97■□□□□ 0.15
HERC1-210ENST00000560897 GGT6Q6P531 493 aa15.97■□□□□ 0.15
HERC1-210ENST00000560897 SAMD9LQ8IVG5 1584 aa15.96■□□□□ 0.15
HERC1-210ENST00000560897 EEA1Q15075 1411 aa15.96■□□□□ 0.15
HERC1-210ENST00000560897 NEURL4Q96JN8 1562 aa15.96■□□□□ 0.14
HERC1-210ENST00000560897 ANKLE2Q86XL3 938 aa15.94■□□□□ 0.14
HERC1-210ENST00000560897 RGS17Q9UGC6 210 aaPredicted RBP15.94■□□□□ 0.14
HERC1-210ENST00000560897 RNF17Q9BXT8 1623 aaKnown RBP15.94■□□□□ 0.14
HERC1-210ENST00000560897 ALKQ9UM73 1620 aa15.94■□□□□ 0.14
HERC1-210ENST00000560897 VWDEQ8N2E2 1590 aa15.93■□□□□ 0.14
HERC1-210ENST00000560897 A2MP01023 1474 aa15.93■□□□□ 0.14
HERC1-210ENST00000560897 ZNF777Q9ULD5 760 aaPredicted RBP15.93■□□□□ 0.14
HERC1-210ENST00000560897 ATP7AQ04656 1500 aa15.92■□□□□ 0.14
HERC1-210ENST00000560897 PLXNC1O60486 1568 aa15.92■□□□□ 0.14
HERC1-210ENST00000560897 SYCP2Q9BX26 1530 aa15.91■□□□□ 0.14
HERC1-210ENST00000560897 CDC42BPAQ5VT25 1732 aa15.91■□□□□ 0.14
HERC1-210ENST00000560897 TNRQ92752 1358 aa15.89■□□□□ 0.13
HERC1-210ENST00000560897 SYNMO15061 1565 aa15.89■□□□□ 0.13
HERC1-210ENST00000560897 NPHP4O75161 1426 aaPredicted RBP15.89■□□□□ 0.13
HERC1-210ENST00000560897 THEMISQ8N1K5 641 aaPredicted RBP15.88■□□□□ 0.13
HERC1-210ENST00000560897 LRRIQ1Q96JM4 1722 aa15.88■□□□□ 0.13
HERC1-210ENST00000560897 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.87■□□□□ 0.13
HERC1-210ENST00000560897 IQGAP1P46940 1657 aa15.86■□□□□ 0.13
HERC1-210ENST00000560897 FAM135AQ9P2D6 1515 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms