RNA–Protein interactions for RNA: ENST00000560005.6

PSEN1-225, Transcript of presenilin 1, human

TSL 3

Gene PSEN1, Length 699 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSEN1-225	ENST00000560005	CDK13	Q14004	1512 aa	Known RBP	34.03	■■■■□ 3.04
PSEN1-225	ENST00000560005	SCAPER	Q9BY12	1400 aa		34.02	■■■■□ 3.04
PSEN1-225	ENST00000560005	PLCH2	O75038	1416 aa		33.98	■■■■□ 3.03
PSEN1-225	ENST00000560005	ARHGEF12	Q9NZN5	1544 aa		33.94	■■■■□ 3.02
PSEN1-225	ENST00000560005	ATP10A	O60312	1499 aa		33.93	■■■■□ 3.02
PSEN1-225	ENST00000560005	C9orf84	Q5VXU9	1444 aa		33.91	■■■■□ 3.02
PSEN1-225	ENST00000560005	PREX1	Q8TCU6	1659 aa		33.89	■■■■□ 3.02
PSEN1-225	ENST00000560005	CEBPA	P49715	358 aa	Predicted RBP	33.86	■■■■□ 3.01
PSEN1-225	ENST00000560005	EFCAB2	Q5VUJ9	269 aa		33.85	■■■■□ 3.01
PSEN1-225	ENST00000560005	MYO5C	Q9NQX4	1742 aa		33.84	■■■■□ 3.01
PSEN1-225	ENST00000560005	ATP1B4	Q9UN42	357 aa	Predicted RBP	33.83	■■■■□ 3.01
PSEN1-225	ENST00000560005	KIF14	Q15058	1648 aa		33.77	■■■■□ 3
PSEN1-225	ENST00000560005	ZNF518A	Q6AHZ1	1483 aa		33.76	■■■■□ 3
PSEN1-225	ENST00000560005	STRC	Q7RTU9	1775 aa		33.75	■■■□□ 2.99
PSEN1-225	ENST00000560005	FMN1	Q68DA7	1419 aa		33.74	■■■□□ 2.99
PSEN1-225	ENST00000560005	CDK11A	Q9UQ88	783 aa	Predicted RBP	33.74	■■■□□ 2.99
PSEN1-225	ENST00000560005	DMRT2	Q9Y5R5	561 aa		33.74	■■■□□ 2.99
PSEN1-225	ENST00000560005	CHIC1	Q5VXU3	224 aa		33.73	■■■□□ 2.99
PSEN1-225	ENST00000560005	AFAP1	Q8N556	730 aa		33.73	■■■□□ 2.99
PSEN1-225	ENST00000560005	UHRF1BP1	Q6BDS2	1440 aa		33.72	■■■□□ 2.99
PSEN1-225	ENST00000560005	ARHGAP5	Q13017	1502 aa		33.72	■■■□□ 2.99
PSEN1-225	ENST00000560005	KDM5C	P41229	1560 aa		33.72	■■■□□ 2.99
PSEN1-225	ENST00000560005	DISP3	Q9P2K9	1392 aa		33.71	■■■□□ 2.99
PSEN1-225	ENST00000560005	EHMT2	Q96KQ7	1210 aa		33.7	■■■□□ 2.99
PSEN1-225	ENST00000560005	MYT1L	Q9UL68	1186 aa		33.7	■■■□□ 2.99
PSEN1-225	ENST00000560005	TRO	Q12816	1431 aa	Predicted RBP	33.67	■■■□□ 2.98
PSEN1-225	ENST00000560005	DIP2C	Q9Y2E4	1556 aa		33.67	■■■□□ 2.98
PSEN1-225	ENST00000560005	ARHGAP35	Q9NRY4	1499 aa		33.65	■■■□□ 2.98
PSEN1-225	ENST00000560005	UBTF	P17480	764 aa	Known RBP	33.65	■■■□□ 2.98
PSEN1-225	ENST00000560005	ILDR2	Q71H61	639 aa		33.65	■■■□□ 2.98
PSEN1-225	ENST00000560005	SETD1B	Q9UPS6	1966 aa	Known RBP	33.65	■■■□□ 2.98
PSEN1-225	ENST00000560005	RERE	Q9P2R6	1566 aa		33.62	■■■□□ 2.97
PSEN1-225	ENST00000560005	CLIP1	P30622	1438 aa		33.62	■■■□□ 2.97
PSEN1-225	ENST00000560005	ABCA6	Q8N139	1617 aa		33.61	■■■□□ 2.97
PSEN1-225	ENST00000560005	C3	P01024	1663 aa		33.59	■■■□□ 2.97
PSEN1-225	ENST00000560005	MLH3	Q9UHC1	1453 aa		33.56	■■■□□ 2.96
PSEN1-225	ENST00000560005	PTPRT	O14522	1441 aa		33.56	■■■□□ 2.96
PSEN1-225	ENST00000560005	CDC42BPB	Q9Y5S2	1711 aa		33.55	■■■□□ 2.96
PSEN1-225	ENST00000560005	LRRIQ1	Q96JM4	1722 aa		33.53	■■■□□ 2.96
PSEN1-225	ENST00000560005	SOCS7	O14512	581 aa		33.53	■■■□□ 2.96
PSEN1-225	ENST00000560005	ESF1	Q9H501	851 aa	Known RBP	33.53	■■■□□ 2.96
PSEN1-225	ENST00000560005	AGL	P35573	1532 aa		33.52	■■■□□ 2.96
PSEN1-225	ENST00000560005	TRAPPC8	Q9Y2L5	1435 aa		33.51	■■■□□ 2.95
PSEN1-225	ENST00000560005	ABCC1	P33527	1531 aa		33.49	■■■□□ 2.95
PSEN1-225	ENST00000560005	PREX2	Q70Z35	1606 aa		33.47	■■■□□ 2.95
PSEN1-225	ENST00000560005	SPATA31D1	Q6ZQQ2	1576 aa		33.46	■■■□□ 2.95
PSEN1-225	ENST00000560005	LTBP4	Q8N2S1	1624 aa		33.46	■■■□□ 2.95
PSEN1-225	ENST00000560005	ITSN2	Q9NZM3	1697 aa		33.45	■■■□□ 2.94
PSEN1-225	ENST00000560005	NCOA1	Q15788	1441 aa		33.42	■■■□□ 2.94
PSEN1-225	ENST00000560005	CNTLN	Q9NXG0	1405 aa		33.41	■■■□□ 2.94
PSEN1-225	ENST00000560005	KIDINS220	Q9ULH0	1771 aa		33.41	■■■□□ 2.94
PSEN1-225	ENST00000560005	IQSEC2	Q5JU85	1478 aa		33.36	■■■□□ 2.93
PSEN1-225	ENST00000560005	CCDC18	Q5T9S5	1454 aa		33.34	■■■□□ 2.93
PSEN1-225	ENST00000560005	CAMSAP1	Q5T5Y3	1602 aa		33.32	■■■□□ 2.92
PSEN1-225	ENST00000560005	CDC42BPA	Q5VT25	1732 aa		33.32	■■■□□ 2.92
PSEN1-225	ENST00000560005	CASKIN1	Q8WXD9	1431 aa		33.31	■■■□□ 2.92
PSEN1-225	ENST00000560005	NPAT	Q14207	1427 aa		33.3	■■■□□ 2.92
PSEN1-225	ENST00000560005	SAMD9L	Q8IVG5	1584 aa		33.29	■■■□□ 2.92
PSEN1-225	ENST00000560005	MROH2A	A6NES4	1674 aa		33.28	■■■□□ 2.92
PSEN1-225	ENST00000560005	ZMYM3	Q14202	1370 aa		33.26	■■■□□ 2.92
PSEN1-225	ENST00000560005	ZNF777	Q9ULD5	760 aa	Predicted RBP	33.26	■■■□□ 2.91
PSEN1-225	ENST00000560005	NCKAP5L	Q9HCH0	1330 aa		33.24	■■■□□ 2.91
PSEN1-225	ENST00000560005	SYCP2	Q9BX26	1530 aa		33.23	■■■□□ 2.91
PSEN1-225	ENST00000560005	SPAG9	O60271	1321 aa	Known RBP	33.22	■■■□□ 2.91
PSEN1-225	ENST00000560005	SUPT6H	Q7KZ85	1726 aa	Known RBP	33.21	■■■□□ 2.91
PSEN1-225	ENST00000560005	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	33.2	■■■□□ 2.91
PSEN1-225	ENST00000560005	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.17	■■■□□ 2.9
PSEN1-225	ENST00000560005	CLTC	Q00610	1675 aa	Known RBP	33.17	■■■□□ 2.9
PSEN1-225	ENST00000560005	GPATCH8	Q9UKJ3	1502 aa	Known RBP	33.16	■■■□□ 2.9
PSEN1-225	ENST00000560005	UBAP1L	F5GYI3	381 aa		33.15	■■■□□ 2.9
PSEN1-225	ENST00000560005	MYO3A	Q8NEV4	1616 aa		33.15	■■■□□ 2.9
PSEN1-225	ENST00000560005	ATP7A	Q04656	1500 aa		33.14	■■■□□ 2.9
PSEN1-225	ENST00000560005	FYCO1	Q9BQS8	1478 aa		33.14	■■■□□ 2.9
PSEN1-225	ENST00000560005	ZNF142	P52746	1687 aa	Predicted RBP	33.13	■■■□□ 2.89
PSEN1-225	ENST00000560005	PLXNC1	O60486	1568 aa		33.12	■■■□□ 2.89
PSEN1-225	ENST00000560005	PLA2R1	Q13018	1463 aa		33.12	■■■□□ 2.89
PSEN1-225	ENST00000560005	A2M	P01023	1474 aa		33.11	■■■□□ 2.89
PSEN1-225	ENST00000560005	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	33.1	■■■□□ 2.89
PSEN1-225	ENST00000560005	PKD2	Q13563	968 aa		33.1	■■■□□ 2.89
PSEN1-225	ENST00000560005	PTPRK	Q15262	1439 aa		33.1	■■■□□ 2.89
PSEN1-225	ENST00000560005	INO80	Q9ULG1	1556 aa	Predicted RBP	33.09	■■■□□ 2.89
PSEN1-225	ENST00000560005	TCOF1	Q13428	1488 aa	Known RBP	33.08	■■■□□ 2.89
PSEN1-225	ENST00000560005	GGT6	Q6P531	493 aa		33.07	■■■□□ 2.88
PSEN1-225	ENST00000560005	KIAA1107	Q9UPP5	1409 aa		33.07	■■■□□ 2.88
PSEN1-225	ENST00000560005	PLEKHH2	Q8IVE3	1493 aa		33.05	■■■□□ 2.88
PSEN1-225	ENST00000560005	CFDP1	Q9UEE9	299 aa	Predicted RBP	33.04	■■■□□ 2.88
PSEN1-225	ENST00000560005	PPP6R1	Q9UPN7	881 aa		33	■■■□□ 2.87
PSEN1-225	ENST00000560005	CCNB3	Q8WWL7	1395 aa		32.99	■■■□□ 2.87
PSEN1-225	ENST00000560005	ADGB	Q8N7X0	1667 aa		32.94	■■■□□ 2.86
PSEN1-225	ENST00000560005	A2ML1	A8K2U0	1454 aa		32.93	■■■□□ 2.86
PSEN1-225	ENST00000560005	DNMT1	P26358	1616 aa	Known RBP	32.91	■■■□□ 2.86
PSEN1-225	ENST00000560005	MTUS2	Q5JR59	1369 aa		32.88	■■■□□ 2.85
PSEN1-225	ENST00000560005	ZNF644	Q9H582	1327 aa	Predicted RBP	32.88	■■■□□ 2.85
PSEN1-225	ENST00000560005	SCAF1	Q9H7N4	1312 aa	Known RBP	32.87	■■■□□ 2.85
PSEN1-225	ENST00000560005	HSPA1L	P34931	641 aa		32.84	■■■□□ 2.85
PSEN1-225	ENST00000560005	MBD5	Q9P267	1494 aa		32.83	■■■□□ 2.85
PSEN1-225	ENST00000560005	PIP4K2B	P78356	416 aa		32.83	■■■□□ 2.85
PSEN1-225	ENST00000560005	TIAM1	Q13009	1591 aa		32.82	■■■□□ 2.84
PSEN1-225	ENST00000560005	POLR1A	O95602	1720 aa	Predicted RBP	32.82	■■■□□ 2.84
PSEN1-225	ENST00000560005	NEURL4	Q96JN8	1562 aa		32.81	■■■□□ 2.84

Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms