RNA–Protein interactions for RNA: ENST00000557554.5

ABCD4-227, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 4

Gene ABCD4, Length 523 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-227ENST00000557554 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.46■□□□□ 0.39
ABCD4-227ENST00000557554 HNRNPUL2Q1KMD3 747 aaKnown RBP17.46■□□□□ 0.39
ABCD4-227ENST00000557554 RAPGEF6Q8TEU7 1601 aa17.45■□□□□ 0.38
ABCD4-227ENST00000557554 NUP153P49790 1475 aaKnown RBP17.44■□□□□ 0.38
ABCD4-227ENST00000557554 HECW1Q76N89 1606 aa17.43■□□□□ 0.38
ABCD4-227ENST00000557554 PLEKHD1A6NEE1 506 aa17.42■□□□□ 0.38
ABCD4-227ENST00000557554 IQSEC2Q5JU85 1478 aa17.42■□□□□ 0.38
ABCD4-227ENST00000557554 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.42■□□□□ 0.38
ABCD4-227ENST00000557554 ATP10AO60312 1499 aa17.41■□□□□ 0.38
ABCD4-227ENST00000557554 CFAP74Q9C0B2 1584 aa17.4■□□□□ 0.38
ABCD4-227ENST00000557554 SAMD9Q5K651 1589 aa17.4■□□□□ 0.38
ABCD4-227ENST00000557554 UHRF1BP1Q6BDS2 1440 aa17.38■□□□□ 0.37
ABCD4-227ENST00000557554 SCAPERQ9BY12 1400 aa17.37■□□□□ 0.37
ABCD4-227ENST00000557554 C9orf84Q5VXU9 1444 aa17.35■□□□□ 0.37
ABCD4-227ENST00000557554 PLCH2O75038 1416 aa17.32■□□□□ 0.36
ABCD4-227ENST00000557554 NCOA1Q15788 1441 aa17.29■□□□□ 0.36
ABCD4-227ENST00000557554 C3P01024 1663 aa17.27■□□□□ 0.36
ABCD4-227ENST00000557554 TRAPPC8Q9Y2L5 1435 aa17.27■□□□□ 0.35
ABCD4-227ENST00000557554 UBAP1LF5GYI3 381 aa17.26■□□□□ 0.35
ABCD4-227ENST00000557554 AFAP1Q8N556 730 aa17.24■□□□□ 0.35
ABCD4-227ENST00000557554 ZNF335Q9H4Z2 1342 aaPredicted RBP17.23■□□□□ 0.35
ABCD4-227ENST00000557554 EFCAB2Q5VUJ9 269 aa17.23■□□□□ 0.35
ABCD4-227ENST00000557554 REREQ9P2R6 1566 aa17.2■□□□□ 0.34
ABCD4-227ENST00000557554 KDM5CP41229 1560 aa17.19■□□□□ 0.34
ABCD4-227ENST00000557554 ZNF518AQ6AHZ1 1483 aa17.19■□□□□ 0.34
ABCD4-227ENST00000557554 NCKAP5LQ9HCH0 1330 aa17.19■□□□□ 0.34
ABCD4-227ENST00000557554 CAMSAP1Q5T5Y3 1602 aa17.18■□□□□ 0.34
ABCD4-227ENST00000557554 HSPA1LP34931 641 aa17.18■□□□□ 0.34
ABCD4-227ENST00000557554 MED1Q15648 1581 aaPredicted RBP17.18■□□□□ 0.34
ABCD4-227ENST00000557554 DIP2CQ9Y2E4 1556 aa17.18■□□□□ 0.34
ABCD4-227ENST00000557554 AGLP35573 1532 aa17.16■□□□□ 0.34
ABCD4-227ENST00000557554 RANGAP1P46060 587 aaPredicted RBP17.16■□□□□ 0.34
ABCD4-227ENST00000557554 CSRNP3Q8WYN3 585 aa17.16■□□□□ 0.34
ABCD4-227ENST00000557554 CDK13Q14004 1512 aaKnown RBP17.16■□□□□ 0.34
ABCD4-227ENST00000557554 MLH3Q9UHC1 1453 aa17.14■□□□□ 0.33
ABCD4-227ENST00000557554 MYO5CQ9NQX4 1742 aa17.13■□□□□ 0.33
ABCD4-227ENST00000557554 NPATQ14207 1427 aa17.13■□□□□ 0.33
ABCD4-227ENST00000557554 ESF1Q9H501 851 aaKnown RBP17.12■□□□□ 0.33
ABCD4-227ENST00000557554 ABCA6Q8N139 1617 aa17.11■□□□□ 0.33
ABCD4-227ENST00000557554 PKD2Q13563 968 aa17.11■□□□□ 0.33
ABCD4-227ENST00000557554 CNTLNQ9NXG0 1405 aa17.11■□□□□ 0.33
ABCD4-227ENST00000557554 MYT1LQ9UL68 1186 aa17.09■□□□□ 0.33
ABCD4-227ENST00000557554 ZMYM3Q14202 1370 aa17.09■□□□□ 0.33
ABCD4-227ENST00000557554 PLA2R1Q13018 1463 aa17.08■□□□□ 0.32
ABCD4-227ENST00000557554 TCOF1Q13428 1488 aaKnown RBP17.08■□□□□ 0.32
ABCD4-227ENST00000557554 PIP4K2BP78356 416 aa17.06■□□□□ 0.32
ABCD4-227ENST00000557554 KIF14Q15058 1648 aa17.06■□□□□ 0.32
ABCD4-227ENST00000557554 MROH2AA6NES4 1674 aa17.04■□□□□ 0.32
ABCD4-227ENST00000557554 TOM1O60784 492 aa17.04■□□□□ 0.32
ABCD4-227ENST00000557554 ARHGAP5Q13017 1502 aa17.04■□□□□ 0.32
ABCD4-227ENST00000557554 KIDINS220Q9ULH0 1771 aa17.03■□□□□ 0.32
ABCD4-227ENST00000557554 CDC42BPBQ9Y5S2 1711 aa17.02■□□□□ 0.32
ABCD4-227ENST00000557554 PPP6R1Q9UPN7 881 aa17.02■□□□□ 0.32
ABCD4-227ENST00000557554 CDK11AQ9UQ88 783 aaPredicted RBP17.02■□□□□ 0.32
ABCD4-227ENST00000557554 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
ABCD4-227ENST00000557554 ZNF142P52746 1687 aaPredicted RBP17.01■□□□□ 0.31
ABCD4-227ENST00000557554 PHF23Q9BUL5 403 aaPredicted RBP17■□□□□ 0.31
ABCD4-227ENST00000557554 TROQ12816 1431 aaPredicted RBP16.99■□□□□ 0.31
ABCD4-227ENST00000557554 PTPRKQ15262 1439 aa16.99■□□□□ 0.31
ABCD4-227ENST00000557554 RGS17Q9UGC6 210 aaPredicted RBP16.99■□□□□ 0.31
ABCD4-227ENST00000557554 ALKQ9UM73 1620 aa16.98■□□□□ 0.31
ABCD4-227ENST00000557554 CEP170BQ9Y4F5 1589 aaPredicted RBP16.98■□□□□ 0.31
ABCD4-227ENST00000557554 MYO3AQ8NEV4 1616 aa16.97■□□□□ 0.31
ABCD4-227ENST00000557554 ABCC1P33527 1531 aa16.96■□□□□ 0.31
ABCD4-227ENST00000557554 SUPT6HQ7KZ85 1726 aaKnown RBP16.96■□□□□ 0.31
ABCD4-227ENST00000557554 ATP1B4Q9UN42 357 aaPredicted RBP16.96■□□□□ 0.31
ABCD4-227ENST00000557554 CPS1P31327 1500 aa16.96■□□□□ 0.3
ABCD4-227ENST00000557554 SHANK2Q9UPX8 1470 aa16.94■□□□□ 0.3
ABCD4-227ENST00000557554 ITSN2Q9NZM3 1697 aa16.94■□□□□ 0.3
ABCD4-227ENST00000557554 CLTCQ00610 1675 aaKnown RBP16.93■□□□□ 0.3
ABCD4-227ENST00000557554 FMN1Q68DA7 1419 aa16.92■□□□□ 0.3
ABCD4-227ENST00000557554 DNMT1P26358 1616 aaKnown RBP16.91■□□□□ 0.3
ABCD4-227ENST00000557554 CLIP1P30622 1438 aa16.9■□□□□ 0.3
ABCD4-227ENST00000557554 PREX2Q70Z35 1606 aa16.9■□□□□ 0.3
ABCD4-227ENST00000557554 A2ML1A8K2U0 1454 aa16.9■□□□□ 0.3
ABCD4-227ENST00000557554 SAMD9LQ8IVG5 1584 aa16.89■□□□□ 0.3
ABCD4-227ENST00000557554 NEURL4Q96JN8 1562 aa16.89■□□□□ 0.3
ABCD4-227ENST00000557554 LRRIQ1Q96JM4 1722 aa16.89■□□□□ 0.29
ABCD4-227ENST00000557554 EEA1Q15075 1411 aa16.87■□□□□ 0.29
ABCD4-227ENST00000557554 VWDEQ8N2E2 1590 aa16.87■□□□□ 0.29
ABCD4-227ENST00000557554 PLXNC1O60486 1568 aa16.85■□□□□ 0.29
ABCD4-227ENST00000557554 GGT6Q6P531 493 aa16.85■□□□□ 0.29
ABCD4-227ENST00000557554 SPAG9O60271 1321 aaKnown RBP16.85■□□□□ 0.29
ABCD4-227ENST00000557554 ARHGAP35Q9NRY4 1499 aa16.85■□□□□ 0.29
ABCD4-227ENST00000557554 POLR1AO95602 1720 aaPredicted RBP16.84■□□□□ 0.29
ABCD4-227ENST00000557554 HNRNPMP52272 730 aaKnown RBP eCLIP16.83■□□□□ 0.28
ABCD4-227ENST00000557554 CDC42BPAQ5VT25 1732 aa16.83■□□□□ 0.28
ABCD4-227ENST00000557554 A2MP01023 1474 aa16.82■□□□□ 0.28
ABCD4-227ENST00000557554 FBXO31Q5XUX0 539 aaPredicted RBP16.81■□□□□ 0.28
ABCD4-227ENST00000557554 POTEAQ6S8J7 498 aa16.81■□□□□ 0.28
ABCD4-227ENST00000557554 ANKLE2Q86XL3 938 aa16.81■□□□□ 0.28
ABCD4-227ENST00000557554 ATP7AQ04656 1500 aa16.8■□□□□ 0.28
ABCD4-227ENST00000557554 MED14O60244 1454 aa16.8■□□□□ 0.28
ABCD4-227ENST00000557554 SENP3Q9H4L4 574 aaPredicted RBP16.79■□□□□ 0.28
ABCD4-227ENST00000557554 ZNF777Q9ULD5 760 aaPredicted RBP16.79■□□□□ 0.28
ABCD4-227ENST00000557554 STRCP1A6NGW2 1772 aa16.79■□□□□ 0.28
ABCD4-227ENST00000557554 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.78■□□□□ 0.28
ABCD4-227ENST00000557554 LRRC7Q96NW7 1537 aa16.78■□□□□ 0.28
ABCD4-227ENST00000557554 SYCP2Q9BX26 1530 aa16.77■□□□□ 0.28
ABCD4-227ENST00000557554 KIAA1107Q9UPP5 1409 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 131.5 ms