RNA–Protein interactions for RNA: ENST00000557454.1

NEDD1-211, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 4

Gene NEDD1, Length 564 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-211ENST00000557454 EFCAB5A4FU69 1503 aa16.75■□□□□ 0.27
NEDD1-211ENST00000557454 MAGI2Q86UL8 1455 aa16.7■□□□□ 0.26
NEDD1-211ENST00000557454 CTTNBP2Q8WZ74 1663 aa16.68■□□□□ 0.26
NEDD1-211ENST00000557454 HECW1Q76N89 1606 aa16.67■□□□□ 0.26
NEDD1-211ENST00000557454 NCOA1Q15788 1441 aa16.67■□□□□ 0.26
NEDD1-211ENST00000557454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.66■□□□□ 0.26
NEDD1-211ENST00000557454 HNRNPUL2Q1KMD3 747 aaKnown RBP16.66■□□□□ 0.26
NEDD1-211ENST00000557454 HSPA1LP34931 641 aa16.65■□□□□ 0.26
NEDD1-211ENST00000557454 ZNF335Q9H4Z2 1342 aaPredicted RBP16.65■□□□□ 0.26
NEDD1-211ENST00000557454 CFAP74Q9C0B2 1584 aa16.64■□□□□ 0.25
NEDD1-211ENST00000557454 C9orf84Q5VXU9 1444 aa16.64■□□□□ 0.25
NEDD1-211ENST00000557454 ATP10AO60312 1499 aa16.63■□□□□ 0.25
NEDD1-211ENST00000557454 P3H3Q8IVL6 736 aa16.63■□□□□ 0.25
NEDD1-211ENST00000557454 FAM9AQ8IZU1 332 aaPredicted RBP16.61■□□□□ 0.25
NEDD1-211ENST00000557454 SETD1BQ9UPS6 1966 aaKnown RBP16.6■□□□□ 0.25
NEDD1-211ENST00000557454 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
NEDD1-211ENST00000557454 RAPGEF6Q8TEU7 1601 aa16.57■□□□□ 0.24
NEDD1-211ENST00000557454 SCAPERQ9BY12 1400 aa16.57■□□□□ 0.24
NEDD1-211ENST00000557454 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.56■□□□□ 0.24
NEDD1-211ENST00000557454 PIP4K2BP78356 416 aa16.56■□□□□ 0.24
NEDD1-211ENST00000557454 NUP153P49790 1475 aaKnown RBP16.55■□□□□ 0.24
NEDD1-211ENST00000557454 CAMSAP1Q5T5Y3 1602 aa16.55■□□□□ 0.24
NEDD1-211ENST00000557454 TRAPPC8Q9Y2L5 1435 aa16.54■□□□□ 0.24
NEDD1-211ENST00000557454 C3P01024 1663 aa16.54■□□□□ 0.24
NEDD1-211ENST00000557454 NCKAP5LQ9HCH0 1330 aa16.53■□□□□ 0.24
NEDD1-211ENST00000557454 PLEKHD1A6NEE1 506 aa16.51■□□□□ 0.23
NEDD1-211ENST00000557454 TOM1O60784 492 aa16.45■□□□□ 0.22
NEDD1-211ENST00000557454 ESF1Q9H501 851 aaKnown RBP16.45■□□□□ 0.22
NEDD1-211ENST00000557454 SAMD9Q5K651 1589 aa16.44■□□□□ 0.22
NEDD1-211ENST00000557454 PLCH2O75038 1416 aa16.44■□□□□ 0.22
NEDD1-211ENST00000557454 PRXQ9BXM0 1461 aa16.43■□□□□ 0.22
NEDD1-211ENST00000557454 DIP2CQ9Y2E4 1556 aa16.43■□□□□ 0.22
NEDD1-211ENST00000557454 ZNF518AQ6AHZ1 1483 aa16.42■□□□□ 0.22
NEDD1-211ENST00000557454 PKD2Q13563 968 aa16.41■□□□□ 0.22
NEDD1-211ENST00000557454 RGS17Q9UGC6 210 aaPredicted RBP16.41■□□□□ 0.22
NEDD1-211ENST00000557454 PLA2R1Q13018 1463 aa16.41■□□□□ 0.22
NEDD1-211ENST00000557454 REREQ9P2R6 1566 aa16.4■□□□□ 0.22
NEDD1-211ENST00000557454 NPATQ14207 1427 aa16.4■□□□□ 0.22
NEDD1-211ENST00000557454 PPP6R1Q9UPN7 881 aa16.4■□□□□ 0.22
NEDD1-211ENST00000557454 TCOF1Q13428 1488 aaKnown RBP16.4■□□□□ 0.22
NEDD1-211ENST00000557454 AFAP1Q8N556 730 aa16.39■□□□□ 0.21
NEDD1-211ENST00000557454 MYT1LQ9UL68 1186 aa16.39■□□□□ 0.21
NEDD1-211ENST00000557454 AGLP35573 1532 aa16.39■□□□□ 0.21
NEDD1-211ENST00000557454 KDM5CP41229 1560 aa16.38■□□□□ 0.21
NEDD1-211ENST00000557454 CNTLNQ9NXG0 1405 aa16.38■□□□□ 0.21
NEDD1-211ENST00000557454 ABCA6Q8N139 1617 aa16.37■□□□□ 0.21
NEDD1-211ENST00000557454 EFCAB2Q5VUJ9 269 aa16.36■□□□□ 0.21
NEDD1-211ENST00000557454 FOXD1Q16676 465 aa16.35■□□□□ 0.21
NEDD1-211ENST00000557454 CPS1P31327 1500 aa16.35■□□□□ 0.21
NEDD1-211ENST00000557454 ALKQ9UM73 1620 aa16.34■□□□□ 0.21
NEDD1-211ENST00000557454 ZNF142P52746 1687 aaPredicted RBP16.32■□□□□ 0.2
NEDD1-211ENST00000557454 CDK13Q14004 1512 aaKnown RBP16.32■□□□□ 0.2
NEDD1-211ENST00000557454 MYO3AQ8NEV4 1616 aa16.32■□□□□ 0.2
NEDD1-211ENST00000557454 CEP170BQ9Y4F5 1589 aaPredicted RBP16.32■□□□□ 0.2
NEDD1-211ENST00000557454 PTPRKQ15262 1439 aa16.31■□□□□ 0.2
NEDD1-211ENST00000557454 ZMYM3Q14202 1370 aa16.3■□□□□ 0.2
NEDD1-211ENST00000557454 MLH3Q9UHC1 1453 aa16.29■□□□□ 0.2
NEDD1-211ENST00000557454 SHANK2Q9UPX8 1470 aa16.29■□□□□ 0.2
NEDD1-211ENST00000557454 RANGAP1P46060 587 aaPredicted RBP16.29■□□□□ 0.2
NEDD1-211ENST00000557454 SRCAPQ6ZRS2 3230 aa16.28■□□□□ 0.2
NEDD1-211ENST00000557454 POTEAQ6S8J7 498 aa16.28■□□□□ 0.2
NEDD1-211ENST00000557454 MYO5CQ9NQX4 1742 aa16.28■□□□□ 0.2
NEDD1-211ENST00000557454 MROH2AA6NES4 1674 aa16.27■□□□□ 0.2
NEDD1-211ENST00000557454 ARHGAP5Q13017 1502 aa16.26■□□□□ 0.19
NEDD1-211ENST00000557454 SUPT6HQ7KZ85 1726 aaKnown RBP16.25■□□□□ 0.19
NEDD1-211ENST00000557454 NEURL4Q96JN8 1562 aa16.22■□□□□ 0.19
NEDD1-211ENST00000557454 SETD1AO15047 1707 aaKnown RBP16.22■□□□□ 0.19
NEDD1-211ENST00000557454 KIF14Q15058 1648 aa16.2■□□□□ 0.18
NEDD1-211ENST00000557454 VWDEQ8N2E2 1590 aa16.2■□□□□ 0.18
NEDD1-211ENST00000557454 A2ML1A8K2U0 1454 aa16.19■□□□□ 0.18
NEDD1-211ENST00000557454 DNMT1P26358 1616 aaKnown RBP16.17■□□□□ 0.18
NEDD1-211ENST00000557454 KIDINS220Q9ULH0 1771 aa16.17■□□□□ 0.18
NEDD1-211ENST00000557454 CLTCQ00610 1675 aaKnown RBP16.17■□□□□ 0.18
NEDD1-211ENST00000557454 ABCC1P33527 1531 aa16.16■□□□□ 0.18
NEDD1-211ENST00000557454 POLR1AO95602 1720 aaPredicted RBP16.15■□□□□ 0.18
NEDD1-211ENST00000557454 RNF17Q9BXT8 1623 aaKnown RBP16.14■□□□□ 0.17
NEDD1-211ENST00000557454 LRRC7Q96NW7 1537 aa16.12■□□□□ 0.17
NEDD1-211ENST00000557454 ITSN2Q9NZM3 1697 aa16.11■□□□□ 0.17
NEDD1-211ENST00000557454 TROQ12816 1431 aaPredicted RBP16.11■□□□□ 0.17
NEDD1-211ENST00000557454 UPF1Q92900 1129 aaKnown RBP eCLIP16.1■□□□□ 0.17
NEDD1-211ENST00000557454 ATP1B4Q9UN42 357 aaPredicted RBP16.1■□□□□ 0.17
NEDD1-211ENST00000557454 CDK11AQ9UQ88 783 aaPredicted RBP16.09■□□□□ 0.17
NEDD1-211ENST00000557454 NPHP4O75161 1426 aaPredicted RBP16.09■□□□□ 0.17
NEDD1-211ENST00000557454 ANKLE2Q86XL3 938 aa16.08■□□□□ 0.16
NEDD1-211ENST00000557454 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.08■□□□□ 0.16
NEDD1-211ENST00000557454 CDC42BPBQ9Y5S2 1711 aa16.08■□□□□ 0.16
NEDD1-211ENST00000557454 GGT6Q6P531 493 aa16.07■□□□□ 0.16
NEDD1-211ENST00000557454 CLIP1P30622 1438 aa16.07■□□□□ 0.16
NEDD1-211ENST00000557454 SYNMO15061 1565 aa16.06■□□□□ 0.16
NEDD1-211ENST00000557454 SAMD9LQ8IVG5 1584 aa16.06■□□□□ 0.16
NEDD1-211ENST00000557454 PLXNC1O60486 1568 aa16.05■□□□□ 0.16
NEDD1-211ENST00000557454 TNRQ92752 1358 aa16.05■□□□□ 0.16
NEDD1-211ENST00000557454 ADRA2BP18089 450 aa16.05■□□□□ 0.16
NEDD1-211ENST00000557454 STRCP1A6NGW2 1772 aa16.05■□□□□ 0.16
NEDD1-211ENST00000557454 PREX2Q70Z35 1606 aa16.05■□□□□ 0.16
NEDD1-211ENST00000557454 MED14O60244 1454 aa16.04■□□□□ 0.16
NEDD1-211ENST00000557454 CSRNP3Q8WYN3 585 aa16.03■□□□□ 0.16
NEDD1-211ENST00000557454 SPAG9O60271 1321 aaKnown RBP16.02■□□□□ 0.16
NEDD1-211ENST00000557454 A2MP01023 1474 aa16.02■□□□□ 0.15
NEDD1-211ENST00000557454 FBXO31Q5XUX0 539 aaPredicted RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms