RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 ST20-MTHFSA0A0A6YYL1 179 aa16.33■□□□□ 0.2
CCDC88C-211ENST00000556726 HFM1A2PYH4 1435 aa16.33■□□□□ 0.2
CCDC88C-211ENST00000556726 RTL5Q5HYW3 569 aaPredicted RBP16.33■□□□□ 0.2
CCDC88C-211ENST00000556726 ANP32AP39687 249 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-211ENST00000556726 ABCA10Q8WWZ4 1543 aa16.31■□□□□ 0.2
CCDC88C-211ENST00000556726 DAXXQ9UER7 740 aaPredicted RBP16.3■□□□□ 0.2
CCDC88C-211ENST00000556726 BCL11AQ9H165 835 aa16.3■□□□□ 0.2
CCDC88C-211ENST00000556726 DNMBPQ6XZF7 1577 aa16.3■□□□□ 0.2
CCDC88C-211ENST00000556726 URB2Q14146 1524 aaKnown RBP16.29■□□□□ 0.2
CCDC88C-211ENST00000556726 CCDC7Q96M83 1385 aa16.29■□□□□ 0.2
CCDC88C-211ENST00000556726 PRG4Q92954 1404 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-211ENST00000556726 PRDM2Q13029 1718 aa16.24■□□□□ 0.19
CCDC88C-211ENST00000556726 USP47Q96K76 1375 aa16.24■□□□□ 0.19
CCDC88C-211ENST00000556726 EFCAB5A4FU69 1503 aa16.24■□□□□ 0.19
CCDC88C-211ENST00000556726 TNNT2P45379 298 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-211ENST00000556726 ZBTB47Q9UFB7 747 aaPredicted RBP16.21■□□□□ 0.19
CCDC88C-211ENST00000556726 ANKRD30AQ9BXX3 1397 aa16.21■□□□□ 0.18
CCDC88C-211ENST00000556726 MAP3K1Q13233 1512 aa16.2■□□□□ 0.18
CCDC88C-211ENST00000556726 ROCK2O75116 1388 aaKnown RBP16.2■□□□□ 0.18
CCDC88C-211ENST00000556726 PLIN1O60240 522 aa16.2■□□□□ 0.18
CCDC88C-211ENST00000556726 CNTLNQ9NXG0 1405 aa16.19■□□□□ 0.18
CCDC88C-211ENST00000556726 WDR43Q15061 677 aaKnown RBP eCLIP16.19■□□□□ 0.18
CCDC88C-211ENST00000556726 NEUROD2Q15784 382 aa16.19■□□□□ 0.18
CCDC88C-211ENST00000556726 CANXP27824 592 aaKnown RBP16.19■□□□□ 0.18
CCDC88C-211ENST00000556726 EPRSP07814 1512 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-211ENST00000556726 LAS1LQ9Y4W2 734 aaKnown RBP16.18■□□□□ 0.18
CCDC88C-211ENST00000556726 NUDCQ9Y266 331 aa16.17■□□□□ 0.18
CCDC88C-211ENST00000556726 ZBED9Q6R2W3 1325 aa16.16■□□□□ 0.18
CCDC88C-211ENST00000556726 PTPN23Q9H3S7 1636 aa16.16■□□□□ 0.18
CCDC88C-211ENST00000556726 ZNF608Q9ULD9 1512 aaPredicted RBP16.16■□□□□ 0.18
CCDC88C-211ENST00000556726 AKNAQ7Z591 1439 aa16.15■□□□□ 0.18
CCDC88C-211ENST00000556726 NBPF1Q3BBV0 1214 aa16.15■□□□□ 0.18
CCDC88C-211ENST00000556726 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.14■□□□□ 0.17
CCDC88C-211ENST00000556726 MSH5O43196 834 aa16.14■□□□□ 0.17
CCDC88C-211ENST00000556726 EHBP1L1Q8N3D4 1523 aa16.14■□□□□ 0.17
CCDC88C-211ENST00000556726 CARMIL2Q6F5E8 1435 aa16.13■□□□□ 0.17
CCDC88C-211ENST00000556726 KNSTRNQ9Y448 316 aa16.13■□□□□ 0.17
CCDC88C-211ENST00000556726 EXOC6Q8TAG9 804 aa16.12■□□□□ 0.17
CCDC88C-211ENST00000556726 SNAPC4Q5SXM2 1469 aa16.12■□□□□ 0.17
CCDC88C-211ENST00000556726 SUPT6HQ7KZ85 1726 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-211ENST00000556726 DAPK1P53355 1430 aa16.12■□□□□ 0.17
CCDC88C-211ENST00000556726 NOP58Q9Y2X3 529 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-211ENST00000556726 RCAN3Q9UKA8 241 aa16.11■□□□□ 0.17
CCDC88C-211ENST00000556726 GRIN2BQ13224 1484 aa16.1■□□□□ 0.17
CCDC88C-211ENST00000556726 RGS3P49796 1198 aa16.1■□□□□ 0.17
CCDC88C-211ENST00000556726 CDCA7LQ96GN5 454 aa16.1■□□□□ 0.17
CCDC88C-211ENST00000556726 PLB1Q6P1J6 1458 aa16.1■□□□□ 0.17
CCDC88C-211ENST00000556726 ANKRD30BQ9BXX2 1392 aa16.1■□□□□ 0.17
CCDC88C-211ENST00000556726 THOC2Q8NI27 1593 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-211ENST00000556726 PANK3Q9H999 370 aa16.09■□□□□ 0.17
CCDC88C-211ENST00000556726 ANKRD50Q9ULJ7 1429 aa16.09■□□□□ 0.17
CCDC88C-211ENST00000556726 ABCC5O15440 1437 aa16.09■□□□□ 0.17
CCDC88C-211ENST00000556726 CCDC146Q8IYE0 955 aa16.08■□□□□ 0.16
CCDC88C-211ENST00000556726 SKAP1Q86WV1 359 aa16.08■□□□□ 0.16
CCDC88C-211ENST00000556726 TMF1P82094 1093 aa16.06■□□□□ 0.16
CCDC88C-211ENST00000556726 KIF15Q9NS87 1388 aa16.06■□□□□ 0.16
CCDC88C-211ENST00000556726 CUL7Q14999 1698 aa16.06■□□□□ 0.16
CCDC88C-211ENST00000556726 SAFB2Q14151 953 aaKnown RBP eCLIP16.06■□□□□ 0.16
CCDC88C-211ENST00000556726 KTN1Q86UP2 1357 aaKnown RBP16.05■□□□□ 0.16
CCDC88C-211ENST00000556726 NUTM2DQ5VT03 806 aaPredicted RBP16.05■□□□□ 0.16
CCDC88C-211ENST00000556726 IQGAP2Q13576 1575 aa16.04■□□□□ 0.16
CCDC88C-211ENST00000556726 CFAP43Q8NDM7 1665 aa16.03■□□□□ 0.16
CCDC88C-211ENST00000556726 MAGI3Q5TCQ9 1506 aa16.03■□□□□ 0.16
CCDC88C-211ENST00000556726 MIA2Q96PC5 1412 aa16.03■□□□□ 0.16
CCDC88C-211ENST00000556726 NLRP13Q86W25 1043 aa16.02■□□□□ 0.16
CCDC88C-211ENST00000556726 PTPRGP23470 1445 aa16.02■□□□□ 0.16
CCDC88C-211ENST00000556726 DEKP35659 375 aaKnown RBP16.02■□□□□ 0.16
CCDC88C-211ENST00000556726 PAK3O75914 559 aaPredicted RBP16.02■□□□□ 0.15
CCDC88C-211ENST00000556726 PNISRQ8TF01 805 aaKnown RBP16.02■□□□□ 0.15
CCDC88C-211ENST00000556726 MYBBP1AQ9BQG0 1328 aaKnown RBP16.02■□□□□ 0.15
CCDC88C-211ENST00000556726 ARXQ96QS3 562 aa16.01■□□□□ 0.15
CCDC88C-211ENST00000556726 RTN4Q9NQC3 1192 aaKnown RBP16.01■□□□□ 0.15
CCDC88C-211ENST00000556726 HECW1Q76N89 1606 aa16.01■□□□□ 0.15
CCDC88C-211ENST00000556726 RALBP1Q15311 655 aa16■□□□□ 0.15
CCDC88C-211ENST00000556726 FRAT1Q92837 279 aaPredicted RBP16■□□□□ 0.15
CCDC88C-211ENST00000556726 CCDC144AA2RUR9 1427 aa16■□□□□ 0.15
CCDC88C-211ENST00000556726 UGGT2Q9NYU1 1516 aa16■□□□□ 0.15
CCDC88C-211ENST00000556726 LAMC3Q9Y6N6 1575 aa15.99■□□□□ 0.15
CCDC88C-211ENST00000556726 TROQ12816 1431 aaPredicted RBP15.99■□□□□ 0.15
CCDC88C-211ENST00000556726 KIF3BO15066 747 aa15.99■□□□□ 0.15
CCDC88C-211ENST00000556726 MRC2Q9UBG0 1479 aa15.98■□□□□ 0.15
CCDC88C-211ENST00000556726 ERICH6BQ5W0A0 696 aa15.98■□□□□ 0.15
CCDC88C-211ENST00000556726 NCOA1Q15788 1441 aa15.98■□□□□ 0.15
CCDC88C-211ENST00000556726 SLC4A3P48751 1232 aa15.98■□□□□ 0.15
CCDC88C-211ENST00000556726 GGT6Q6P531 493 aa15.98■□□□□ 0.15
CCDC88C-211ENST00000556726 KIAA1107Q9UPP5 1409 aa15.98■□□□□ 0.15
CCDC88C-211ENST00000556726 RRP1P56182 461 aaKnown RBP15.98■□□□□ 0.15
CCDC88C-211ENST00000556726 AFAP1Q8N556 730 aa15.97■□□□□ 0.15
CCDC88C-211ENST00000556726 KDM6BO15054 1643 aa15.97■□□□□ 0.15
CCDC88C-211ENST00000556726 PLPPR3Q6T4P5 718 aa15.97■□□□□ 0.15
CCDC88C-211ENST00000556726 CTTNBP2Q8WZ74 1663 aa15.96■□□□□ 0.15
CCDC88C-211ENST00000556726 ARHGEF11O15085 1522 aa15.96■□□□□ 0.15
CCDC88C-211ENST00000556726 CRBNQ96SW2 442 aa15.95■□□□□ 0.14
CCDC88C-211ENST00000556726 RPRD2Q5VT52 1461 aaKnown RBP15.95■□□□□ 0.14
CCDC88C-211ENST00000556726 NEFMP07197 916 aa15.95■□□□□ 0.14
CCDC88C-211ENST00000556726 C9orf84Q5VXU9 1444 aa15.95■□□□□ 0.14
CCDC88C-211ENST00000556726 FANCIQ9NVI1 1328 aa15.94■□□□□ 0.14
CCDC88C-211ENST00000556726 EFCAB2Q5VUJ9 269 aa15.94■□□□□ 0.14
CCDC88C-211ENST00000556726 RRP7AQ9Y3A4 280 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-211ENST00000556726 KIAA0586Q9BVV6 1533 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 198 ms