RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 GPATCH8Q9UKJ3 1502 aaKnown RBP14.64□□□□□ -0.07
TMEM260-211ENST00000556648 ACIN1Q9UKV3 1341 aaKnown RBP14.63□□□□□ -0.07
TMEM260-211ENST00000556648 SHROOM2Q13796 1616 aa14.62□□□□□ -0.07
TMEM260-211ENST00000556648 YTHDC1Q96MU7 727 aaKnown RBP14.62□□□□□ -0.07
TMEM260-211ENST00000556648 ERCC6L2Q5T890 1561 aa14.62□□□□□ -0.07
TMEM260-211ENST00000556648 CDC42BPAQ5VT25 1732 aa14.61□□□□□ -0.07
TMEM260-211ENST00000556648 KDM5BQ9UGL1 1544 aa14.6□□□□□ -0.07
TMEM260-211ENST00000556648 ROCK1Q13464 1354 aa14.6□□□□□ -0.07
TMEM260-211ENST00000556648 PPP1R15AO75807 674 aaPredicted RBP14.6□□□□□ -0.07
TMEM260-211ENST00000556648 TRIM52Q96A61 297 aa14.6□□□□□ -0.07
TMEM260-211ENST00000556648 CROCC2H7BZ55 1655 aa14.6□□□□□ -0.07
TMEM260-211ENST00000556648 ABCC10Q5T3U5 1492 aa14.6□□□□□ -0.07
TMEM260-211ENST00000556648 PTPRGP23470 1445 aa14.6□□□□□ -0.07
TMEM260-211ENST00000556648 TONSLQ96HA7 1378 aa14.6□□□□□ -0.07
TMEM260-211ENST00000556648 CFDP1Q9UEE9 299 aaPredicted RBP14.59□□□□□ -0.07
TMEM260-211ENST00000556648 TIMELESSQ9UNS1 1208 aa14.59□□□□□ -0.07
TMEM260-211ENST00000556648 ZNF777Q9ULD5 760 aaPredicted RBP14.58□□□□□ -0.08
TMEM260-211ENST00000556648 ADGBQ8N7X0 1667 aa14.58□□□□□ -0.08
TMEM260-211ENST00000556648 PLEKHD1A6NEE1 506 aa14.56□□□□□ -0.08
TMEM260-211ENST00000556648 CENPBP07199 599 aaPredicted RBP14.56□□□□□ -0.08
TMEM260-211ENST00000556648 FOXD1Q16676 465 aa14.56□□□□□ -0.08
TMEM260-211ENST00000556648 MPHOSPH9Q99550 1183 aa14.54□□□□□ -0.08
TMEM260-211ENST00000556648 HIRIP3Q9BW71 556 aaPredicted RBP14.54□□□□□ -0.08
TMEM260-211ENST00000556648 ADGRL2O95490 1459 aa14.52□□□□□ -0.08
TMEM260-211ENST00000556648 CLASP1Q7Z460 1538 aa14.52□□□□□ -0.09
TMEM260-211ENST00000556648 PHF23Q9BUL5 403 aaPredicted RBP14.51□□□□□ -0.09
TMEM260-211ENST00000556648 NCOA1Q15788 1441 aa14.51□□□□□ -0.09
TMEM260-211ENST00000556648 PZPP20742 1482 aa14.49□□□□□ -0.09
TMEM260-211ENST00000556648 CDC42BPBQ9Y5S2 1711 aa14.49□□□□□ -0.09
TMEM260-211ENST00000556648 ABCC2Q92887 1545 aa14.48□□□□□ -0.09
TMEM260-211ENST00000556648 TTC37Q6PGP7 1564 aa14.48□□□□□ -0.09
TMEM260-211ENST00000556648 SAMD9LQ8IVG5 1584 aa14.48□□□□□ -0.09
TMEM260-211ENST00000556648 PREX2Q70Z35 1606 aa14.48□□□□□ -0.09
TMEM260-211ENST00000556648 ANKRD30BQ9BXX2 1392 aa14.47□□□□□ -0.09
TMEM260-211ENST00000556648 C9orf84Q5VXU9 1444 aa14.46□□□□□ -0.09
TMEM260-211ENST00000556648 DDX10Q13206 875 aaKnown RBP14.46□□□□□ -0.1
TMEM260-211ENST00000556648 SHANK2Q9UPX8 1470 aa14.46□□□□□ -0.1
TMEM260-211ENST00000556648 ANKRD30AQ9BXX3 1397 aa14.45□□□□□ -0.1
TMEM260-211ENST00000556648 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.44□□□□□ -0.1
TMEM260-211ENST00000556648 HNRNPMP52272 730 aaKnown RBP eCLIP14.44□□□□□ -0.1
TMEM260-211ENST00000556648 SLC4A1APQ9BWU0 796 aaKnown RBP14.44□□□□□ -0.1
TMEM260-211ENST00000556648 GTF3C3Q9Y5Q9 886 aa14.44□□□□□ -0.1
TMEM260-211ENST00000556648 ARHGEF5Q12774 1597 aa14.43□□□□□ -0.1
TMEM260-211ENST00000556648 MBD5Q9P267 1494 aa14.43□□□□□ -0.1
TMEM260-211ENST00000556648 RPRD2Q5VT52 1461 aaKnown RBP14.43□□□□□ -0.1
TMEM260-211ENST00000556648 TEX14Q8IWB6 1497 aa14.43□□□□□ -0.1
TMEM260-211ENST00000556648 ZCCHC11Q5TAX3 1644 aaKnown RBP14.43□□□□□ -0.1
TMEM260-211ENST00000556648 L3MBTL2Q969R5 705 aa14.42□□□□□ -0.1
TMEM260-211ENST00000556648 ANKRD50Q9ULJ7 1429 aa14.42□□□□□ -0.1
TMEM260-211ENST00000556648 SYCP2Q9BX26 1530 aa14.4□□□□□ -0.1
TMEM260-211ENST00000556648 KCNH8Q96L42 1107 aa14.4□□□□□ -0.1
TMEM260-211ENST00000556648 ARHGAP5Q13017 1502 aa14.4□□□□□ -0.1
TMEM260-211ENST00000556648 CCDC141Q6ZP82 1450 aa14.39□□□□□ -0.11
TMEM260-211ENST00000556648 MYO5CQ9NQX4 1742 aa14.39□□□□□ -0.11
TMEM260-211ENST00000556648 KIF15Q9NS87 1388 aa14.38□□□□□ -0.11
TMEM260-211ENST00000556648 KIAA1107Q9UPP5 1409 aa14.38□□□□□ -0.11
TMEM260-211ENST00000556648 UHRF1BP1LA0JNW5 1464 aa14.36□□□□□ -0.11
TMEM260-211ENST00000556648 TSPY4P0CV99 314 aa14.36□□□□□ -0.11
TMEM260-211ENST00000556648 TSPY10P0CW01 314 aa14.36□□□□□ -0.11
TMEM260-211ENST00000556648 HSPA5P11021 654 aaKnown RBP14.36□□□□□ -0.11
TMEM260-211ENST00000556648 NBPF8Q3BBV2 869 aa14.36□□□□□ -0.11
TMEM260-211ENST00000556648 KDM5DQ9BY66 1539 aa14.35□□□□□ -0.11
TMEM260-211ENST00000556648 PKD2Q13563 968 aa14.35□□□□□ -0.11
TMEM260-211ENST00000556648 NUP155O75694 1391 aa14.34□□□□□ -0.11
TMEM260-211ENST00000556648 ARHGEF12Q9NZN5 1544 aa14.33□□□□□ -0.12
TMEM260-211ENST00000556648 MAST1Q9Y2H9 1570 aa14.32□□□□□ -0.12
TMEM260-211ENST00000556648 WASHC2AQ641Q2 1341 aa14.29□□□□□ -0.12
TMEM260-211ENST00000556648 PLXNC1O60486 1568 aa14.28□□□□□ -0.12
TMEM260-211ENST00000556648 PLCH2O75038 1416 aa14.28□□□□□ -0.12
TMEM260-211ENST00000556648 EIF4G2P78344 907 aaKnown RBP eCLIP14.28□□□□□ -0.12
TMEM260-211ENST00000556648 ABCC1P33527 1531 aa14.28□□□□□ -0.12
TMEM260-211ENST00000556648 FAM135AQ9P2D6 1515 aa14.28□□□□□ -0.12
TMEM260-211ENST00000556648 UNC13BO14795 1591 aa14.27□□□□□ -0.13
TMEM260-211ENST00000556648 PLEKHH2Q8IVE3 1493 aa14.27□□□□□ -0.13
TMEM260-211ENST00000556648 C11orf95C9JLR9 678 aaPredicted RBP14.26□□□□□ -0.13
TMEM260-211ENST00000556648 RSPH4AQ5TD94 716 aa14.25□□□□□ -0.13
TMEM260-211ENST00000556648 ANP32CO43423 234 aa14.25□□□□□ -0.13
TMEM260-211ENST00000556648 TRAPPC8Q9Y2L5 1435 aa14.24□□□□□ -0.13
TMEM260-211ENST00000556648 SPATA31E1Q6ZUB1 1445 aa14.23□□□□□ -0.13
TMEM260-211ENST00000556648 ZNF326Q5BKZ1 582 aaKnown RBP14.23□□□□□ -0.13
TMEM260-211ENST00000556648 WDR7Q9Y4E6 1490 aa14.22□□□□□ -0.13
TMEM260-211ENST00000556648 CCDC7Q96M83 1385 aa14.21□□□□□ -0.13
TMEM260-211ENST00000556648 DUOX2Q9NRD8 1548 aa14.21□□□□□ -0.13
TMEM260-211ENST00000556648 EFCAB2Q5VUJ9 269 aa14.2□□□□□ -0.14
TMEM260-211ENST00000556648 IQGAP3Q86VI3 1631 aa14.2□□□□□ -0.14
TMEM260-211ENST00000556648 CCER2I3L3R5 266 aa14.2□□□□□ -0.14
TMEM260-211ENST00000556648 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.2□□□□□ -0.14
TMEM260-211ENST00000556648 CNTLNQ9NXG0 1405 aa14.2□□□□□ -0.14
TMEM260-211ENST00000556648 POLR1AO95602 1720 aaPredicted RBP14.19□□□□□ -0.14
TMEM260-211ENST00000556648 BCORL1Q5H9F3 1711 aa14.19□□□□□ -0.14
TMEM260-211ENST00000556648 PLA2R1Q13018 1463 aa14.18□□□□□ -0.14
TMEM260-211ENST00000556648 ABCA9Q8IUA7 1624 aa14.18□□□□□ -0.14
TMEM260-211ENST00000556648 KDM5CP41229 1560 aa14.18□□□□□ -0.14
TMEM260-211ENST00000556648 UHRF1BP1Q6BDS2 1440 aa14.18□□□□□ -0.14
TMEM260-211ENST00000556648 MAGI2Q86UL8 1455 aa14.18□□□□□ -0.14
TMEM260-211ENST00000556648 ARAP3Q8WWN8 1544 aa14.18□□□□□ -0.14
TMEM260-211ENST00000556648 KIF7Q2M1P5 1343 aa14.17□□□□□ -0.14
TMEM260-211ENST00000556648 ZFYVE16Q7Z3T8 1539 aa14.17□□□□□ -0.14
TMEM260-211ENST00000556648 ERBINQ96RT1 1412 aa14.17□□□□□ -0.14
TMEM260-211ENST00000556648 RALGAPBQ86X10 1494 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms