RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 POTEJP0CG39 1038 aa17.03■□□□□ 0.32
GTF2A1-204ENST00000556268 PDCD7Q8N8D1 485 aaKnown RBP17.03■□□□□ 0.32
GTF2A1-204ENST00000556268 WDR62O43379 1518 aa17.02■□□□□ 0.32
GTF2A1-204ENST00000556268 ILDR1Q86SU0 546 aaPredicted RBP16.99■□□□□ 0.31
GTF2A1-204ENST00000556268 CFTRP13569 1480 aa16.99■□□□□ 0.31
GTF2A1-204ENST00000556268 RSF1Q96T23 1441 aaPredicted RBP16.97■□□□□ 0.31
GTF2A1-204ENST00000556268 HS6ST3Q8IZP7 471 aa16.96■□□□□ 0.31
GTF2A1-204ENST00000556268 FANCD2Q9BXW9 1451 aa16.96■□□□□ 0.31
GTF2A1-204ENST00000556268 CEP164Q9UPV0 1460 aa16.95■□□□□ 0.3
GTF2A1-204ENST00000556268 CHGAP10645 457 aaKnown RBP16.94■□□□□ 0.3
GTF2A1-204ENST00000556268 SOX12O15370 315 aa16.93■□□□□ 0.3
GTF2A1-204ENST00000556268 OTUD5Q96G74 571 aa16.93■□□□□ 0.3
GTF2A1-204ENST00000556268 PHF8Q9UPP1 1060 aa16.91■□□□□ 0.3
GTF2A1-204ENST00000556268 DPY19L2Q6NUT2 758 aa16.89■□□□□ 0.29
GTF2A1-204ENST00000556268 MAMSTRQ6ZN01 415 aa16.88■□□□□ 0.29
GTF2A1-204ENST00000556268 MS4A4AQ96JQ5 239 aa16.86■□□□□ 0.29
GTF2A1-204ENST00000556268 MFRPQ9BY79 579 aa16.86■□□□□ 0.29
GTF2A1-204ENST00000556268 SCUBE2Q9NQ36 999 aa16.86■□□□□ 0.29
GTF2A1-204ENST00000556268 TOP2AP11388 1531 aaKnown RBP16.84■□□□□ 0.29
GTF2A1-204ENST00000556268 NLRP6P59044 892 aa16.83■□□□□ 0.28
GTF2A1-204ENST00000556268 URB2Q14146 1524 aaKnown RBP16.83■□□□□ 0.28
GTF2A1-204ENST00000556268 FBXO22Q8NEZ5 403 aa16.83■□□□□ 0.28
GTF2A1-204ENST00000556268 L3MBTL3Q96JM7 780 aaPredicted RBP16.82■□□□□ 0.28
GTF2A1-204ENST00000556268 BOLA1Q9Y3E2 137 aa16.77■□□□□ 0.28
GTF2A1-204ENST00000556268 NKX1-1Q15270 411 aaPredicted RBP16.74■□□□□ 0.27
GTF2A1-204ENST00000556268 CCDC88BA6NC98 1476 aa16.73■□□□□ 0.27
GTF2A1-204ENST00000556268 G3V3G9 751 aa16.72■□□□□ 0.27
GTF2A1-204ENST00000556268 C3orf67Q6ZVT6 689 aa16.72■□□□□ 0.27
GTF2A1-204ENST00000556268 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.7■□□□□ 0.26
GTF2A1-204ENST00000556268 MICALL2Q8IY33 904 aa16.68■□□□□ 0.26
GTF2A1-204ENST00000556268 TMEM121BQ9BXQ6 578 aaPredicted RBP16.68■□□□□ 0.26
GTF2A1-204ENST00000556268 SLAIN1Q8ND83 568 aa16.67■□□□□ 0.26
GTF2A1-204ENST00000556268 IFT140Q96RY7 1462 aa16.67■□□□□ 0.26
GTF2A1-204ENST00000556268 ZNF608Q9ULD9 1512 aaPredicted RBP16.65■□□□□ 0.26
GTF2A1-204ENST00000556268 TOPBP1Q92547 1522 aa16.62■□□□□ 0.25
GTF2A1-204ENST00000556268 ABCC8Q09428 1581 aa16.61■□□□□ 0.25
GTF2A1-204ENST00000556268 PPP1R37O75864 691 aa16.61■□□□□ 0.25
GTF2A1-204ENST00000556268 PRDM2Q13029 1718 aa16.58■□□□□ 0.24
GTF2A1-204ENST00000556268 RYDENQ9NUL5 291 aaKnown RBP16.55■□□□□ 0.24
GTF2A1-204ENST00000556268 RIMBP3CA6NJZ7 1639 aa16.52■□□□□ 0.24
GTF2A1-204ENST00000556268 RIMBP3BA6NNM3 1639 aa16.52■□□□□ 0.24
GTF2A1-204ENST00000556268 RIMBP3Q9UFD9 1639 aa16.52■□□□□ 0.24
GTF2A1-204ENST00000556268 GTPBP6O43824 516 aaPredicted RBP16.52■□□□□ 0.24
GTF2A1-204ENST00000556268 AQRO60306 1485 aaKnown RBP eCLIP16.51■□□□□ 0.233e-6■■□□□ 12.4
GTF2A1-204ENST00000556268 BBXQ8WY36 941 aaPredicted RBP16.51■□□□□ 0.23
GTF2A1-204ENST00000556268 CYB5RLQ6IPT4 315 aa16.5■□□□□ 0.23
GTF2A1-204ENST00000556268 TMEM92Q6UXU6 159 aa16.5■□□□□ 0.23
GTF2A1-204ENST00000556268 DNMBPQ6XZF7 1577 aa16.5■□□□□ 0.23
GTF2A1-204ENST00000556268 ARHGEF11O15085 1522 aa16.5■□□□□ 0.23
GTF2A1-204ENST00000556268 TARBP1Q13395 1621 aaKnown RBP16.47■□□□□ 0.23
GTF2A1-204ENST00000556268 EIF4G3O43432 1585 aaKnown RBP16.44■□□□□ 0.22
GTF2A1-204ENST00000556268 POLA1P09884 1462 aaPredicted RBP16.44■□□□□ 0.22
GTF2A1-204ENST00000556268 SOGA1O94964 1423 aa16.42■□□□□ 0.22
GTF2A1-204ENST00000556268 RAD54L2Q9Y4B4 1467 aa16.4■□□□□ 0.22
GTF2A1-204ENST00000556268 TDRD9Q8NDG6 1382 aaKnown RBP16.39■□□□□ 0.21
GTF2A1-204ENST00000556268 FAM163AQ96GL9 167 aaPredicted RBP16.38■□□□□ 0.21
GTF2A1-204ENST00000556268 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.37■□□□□ 0.21
GTF2A1-204ENST00000556268 LCE2DQ5TA82 110 aaPredicted RBP16.36■□□□□ 0.21
GTF2A1-204ENST00000556268 SNPHO15079 494 aa16.35■□□□□ 0.21
GTF2A1-204ENST00000556268 ARAP1Q96P48 1450 aa16.35■□□□□ 0.21
GTF2A1-204ENST00000556268 C2orf72A6NCS6 295 aa16.34■□□□□ 0.21
GTF2A1-204ENST00000556268 KIF3CO14782 793 aa16.34■□□□□ 0.21
GTF2A1-204ENST00000556268 CHD1O14646 1710 aa16.32■□□□□ 0.2
GTF2A1-204ENST00000556268 CHMP7Q8WUX9 453 aaPredicted RBP16.32■□□□□ 0.2
GTF2A1-204ENST00000556268 TMC2Q8TDI7 906 aa16.31■□□□□ 0.2
GTF2A1-204ENST00000556268 SPRYD3Q8NCJ5 442 aa16.3■□□□□ 0.2
GTF2A1-204ENST00000556268 FGD5Q6ZNL6 1462 aa16.29■□□□□ 0.2
GTF2A1-204ENST00000556268 HOXB3P14651 431 aaPredicted RBP16.29■□□□□ 0.2
GTF2A1-204ENST00000556268 ST18O60284 1047 aa16.28■□□□□ 0.2
GTF2A1-204ENST00000556268 PAXIP1Q6ZW49 1069 aaPredicted RBP16.27■□□□□ 0.2
GTF2A1-204ENST00000556268 CUX1P39880 1505 aa16.27■□□□□ 0.2
GTF2A1-204ENST00000556268 WDR97A6NE52 1622 aa16.27■□□□□ 0.19
GTF2A1-204ENST00000556268 SNAPC4Q5SXM2 1469 aa16.26■□□□□ 0.19
GTF2A1-204ENST00000556268 GRIN2BQ13224 1484 aa16.25■□□□□ 0.19
GTF2A1-204ENST00000556268 MAGI1Q96QZ7 1491 aaPredicted RBP16.25■□□□□ 0.19
GTF2A1-204ENST00000556268 CFAP44Q96MT7 982 aa16.25■□□□□ 0.19
GTF2A1-204ENST00000556268 CLASP1Q7Z460 1538 aa16.24■□□□□ 0.19
GTF2A1-204ENST00000556268 DOK7Q18PE1 504 aa16.23■□□□□ 0.19
GTF2A1-204ENST00000556268 GPHNQ9NQX3 736 aaPredicted RBP16.22■□□□□ 0.19
GTF2A1-204ENST00000556268 CRISPLD2Q9H0B8 497 aa16.2■□□□□ 0.18
GTF2A1-204ENST00000556268 SYNJ2O15056 1496 aa16.2■□□□□ 0.18
GTF2A1-204ENST00000556268 NCKAP5LQ9HCH0 1330 aa16.19■□□□□ 0.18
GTF2A1-204ENST00000556268 CADPS2Q86UW7 1296 aa16.19■□□□□ 0.18
GTF2A1-204ENST00000556268 SYNJ1O43426 1573 aa16.17■□□□□ 0.18
GTF2A1-204ENST00000556268 GAPVD1Q14C86 1478 aa16.17■□□□□ 0.18
GTF2A1-204ENST00000556268 ZNF710Q8N1W2 664 aa16.17■□□□□ 0.18
GTF2A1-204ENST00000556268 POTEMA6NI47 508 aa16.16■□□□□ 0.18
GTF2A1-204ENST00000556268 FOXK1P85037 733 aa16.16■□□□□ 0.18
GTF2A1-204ENST00000556268 DSG2Q14126 1118 aa16.15■□□□□ 0.18
GTF2A1-204ENST00000556268 POTEGQ6S5H5 508 aa16.15■□□□□ 0.18
GTF2A1-204ENST00000556268 ABCA10Q8WWZ4 1543 aa16.14■□□□□ 0.18
GTF2A1-204ENST00000556268 RIMBP2O15034 1052 aa16.14■□□□□ 0.17
GTF2A1-204ENST00000556268 PLPP6Q8IY26 295 aa16.12■□□□□ 0.17
GTF2A1-204ENST00000556268 PDE4AP27815 886 aa16.11■□□□□ 0.17
GTF2A1-204ENST00000556268 MARVELD3Q96A59 401 aa16.11■□□□□ 0.17
GTF2A1-204ENST00000556268 SUPT5HO00267 1087 aaKnown RBP16.09■□□□□ 0.17
GTF2A1-204ENST00000556268 ZSWIM6Q9HCJ5 1215 aa16.09■□□□□ 0.17
GTF2A1-204ENST00000556268 HOXB1P14653 301 aaPredicted RBP16.08■□□□□ 0.16
GTF2A1-204ENST00000556268 LARP6Q9BRS8 491 aaKnown RBP16.08■□□□□ 0.16
GTF2A1-204ENST00000556268 PPP1R15BQ5SWA1 713 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms