RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PPP4R2Q9NY27 417 aa19.87■□□□□ 0.77
CUX1-215ENST00000556210 CDK13Q14004 1512 aaKnown RBP19.86■□□□□ 0.77
CUX1-215ENST00000556210 CANXP27824 592 aaKnown RBP19.86■□□□□ 0.77
CUX1-215ENST00000556210 NAIPQ13075 1403 aa19.85■□□□□ 0.77
CUX1-215ENST00000556210 ANP32AP39687 249 aaKnown RBP19.85■□□□□ 0.77
CUX1-215ENST00000556210 ABCA10Q8WWZ4 1543 aa19.84■□□□□ 0.77
CUX1-215ENST00000556210 KIF7Q2M1P5 1343 aa19.84■□□□□ 0.77
CUX1-215ENST00000556210 PLPPR3Q6T4P5 718 aa19.84■□□□□ 0.77
CUX1-215ENST00000556210 URB2Q14146 1524 aaKnown RBP19.84■□□□□ 0.77
CUX1-215ENST00000556210 NEUROD2Q15784 382 aa19.83■□□□□ 0.77
CUX1-215ENST00000556210 WDR43Q15061 677 aaKnown RBP eCLIP19.83■□□□□ 0.76
CUX1-215ENST00000556210 MAPKBP1O60336 1514 aa19.83■□□□□ 0.76
CUX1-215ENST00000556210 ANKRD30AQ9BXX3 1397 aa19.82■□□□□ 0.76
CUX1-215ENST00000556210 PRG4Q92954 1404 aaPredicted RBP19.82■□□□□ 0.76
CUX1-215ENST00000556210 DNMBPQ6XZF7 1577 aa19.82■□□□□ 0.76
CUX1-215ENST00000556210 CARMIL2Q6F5E8 1435 aa19.81■□□□□ 0.76
CUX1-215ENST00000556210 HFM1A2PYH4 1435 aa19.81■□□□□ 0.76
CUX1-215ENST00000556210 ROCK2O75116 1388 aaKnown RBP19.78■□□□□ 0.76
CUX1-215ENST00000556210 NPM1P06748 294 aaKnown RBP eCLIP19.78■□□□□ 0.76
CUX1-215ENST00000556210 KNSTRNQ9Y448 316 aa19.77■□□□□ 0.75
CUX1-215ENST00000556210 PRDM2Q13029 1718 aa19.76■□□□□ 0.75
CUX1-215ENST00000556210 USP47Q96K76 1375 aa19.76■□□□□ 0.75
CUX1-215ENST00000556210 CCDC7Q96M83 1385 aa19.75■□□□□ 0.75
CUX1-215ENST00000556210 SAFB2Q14151 953 aaKnown RBP eCLIP19.73■□□□□ 0.75
CUX1-215ENST00000556210 ZNF608Q9ULD9 1512 aaPredicted RBP19.72■□□□□ 0.75
CUX1-215ENST00000556210 NUTM2DQ5VT03 806 aaPredicted RBP19.72■□□□□ 0.75
CUX1-215ENST00000556210 ZBTB47Q9UFB7 747 aaPredicted RBP19.7■□□□□ 0.74
CUX1-215ENST00000556210 EFCAB5A4FU69 1503 aa19.7■□□□□ 0.74
CUX1-215ENST00000556210 NBPF1Q3BBV0 1214 aa19.69■□□□□ 0.74
CUX1-215ENST00000556210 GGT6Q6P531 493 aa19.69■□□□□ 0.74
CUX1-215ENST00000556210 GRIN2BQ13224 1484 aa19.69■□□□□ 0.74
CUX1-215ENST00000556210 PLIN1O60240 522 aa19.69■□□□□ 0.74
CUX1-215ENST00000556210 PTPRGP23470 1445 aa19.68■□□□□ 0.74
CUX1-215ENST00000556210 EPRSP07814 1512 aaKnown RBP19.68■□□□□ 0.74
CUX1-215ENST00000556210 DEKP35659 375 aaKnown RBP19.67■□□□□ 0.74
CUX1-215ENST00000556210 STAG3Q9UJ98 1225 aa19.67■□□□□ 0.74
CUX1-215ENST00000556210 TMF1P82094 1093 aa19.66■□□□□ 0.74
CUX1-215ENST00000556210 KIF3BO15066 747 aa19.66■□□□□ 0.74
CUX1-215ENST00000556210 PANK3Q9H999 370 aa19.65■□□□□ 0.74
CUX1-215ENST00000556210 NOP58Q9Y2X3 529 aaKnown RBP19.65■□□□□ 0.74
CUX1-215ENST00000556210 SNAPC4Q5SXM2 1469 aa19.64■□□□□ 0.73
CUX1-215ENST00000556210 ANKRD50Q9ULJ7 1429 aa19.64■□□□□ 0.73
CUX1-215ENST00000556210 PLB1Q6P1J6 1458 aa19.63■□□□□ 0.73
CUX1-215ENST00000556210 NUDCQ9Y266 331 aa19.63■□□□□ 0.73
CUX1-215ENST00000556210 RGS3P49796 1198 aa19.63■□□□□ 0.73
CUX1-215ENST00000556210 CCDC146Q8IYE0 955 aa19.62■□□□□ 0.73
CUX1-215ENST00000556210 KIF15Q9NS87 1388 aa19.62■□□□□ 0.73
CUX1-215ENST00000556210 EFCAB2Q5VUJ9 269 aa19.61■□□□□ 0.73
CUX1-215ENST00000556210 LAS1LQ9Y4W2 734 aaKnown RBP19.61■□□□□ 0.73
CUX1-215ENST00000556210 CNTLNQ9NXG0 1405 aa19.6■□□□□ 0.73
CUX1-215ENST00000556210 AFAP1Q8N556 730 aa19.6■□□□□ 0.73
CUX1-215ENST00000556210 RCAN3Q9UKA8 241 aa19.6■□□□□ 0.73
CUX1-215ENST00000556210 FANCIQ9NVI1 1328 aa19.59■□□□□ 0.73
CUX1-215ENST00000556210 MSH5O43196 834 aa19.59■□□□□ 0.73
CUX1-215ENST00000556210 MAP3K1Q13233 1512 aa19.59■□□□□ 0.73
CUX1-215ENST00000556210 DAPK1P53355 1430 aa19.58■□□□□ 0.73
CUX1-215ENST00000556210 ZBED9Q6R2W3 1325 aa19.58■□□□□ 0.73
CUX1-215ENST00000556210 PPM1GO15355 546 aaPredicted RBP19.58■□□□□ 0.72
CUX1-215ENST00000556210 EHBP1L1Q8N3D4 1523 aa19.58■□□□□ 0.72
CUX1-215ENST00000556210 KTN1Q86UP2 1357 aaKnown RBP19.57■□□□□ 0.72
CUX1-215ENST00000556210 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.57■□□□□ 0.728e-6■□□□□ 8.4
CUX1-215ENST00000556210 FRAT1Q92837 279 aaPredicted RBP19.57■□□□□ 0.72
CUX1-215ENST00000556210 EXOC6Q8TAG9 804 aa19.56■□□□□ 0.72
CUX1-215ENST00000556210 MRC2Q9UBG0 1479 aa19.56■□□□□ 0.72
CUX1-215ENST00000556210 CDCA7LQ96GN5 454 aa19.56■□□□□ 0.72
CUX1-215ENST00000556210 ERICH6BQ5W0A0 696 aa19.55■□□□□ 0.72
CUX1-215ENST00000556210 ABCC5O15440 1437 aa19.55■□□□□ 0.72
CUX1-215ENST00000556210 STK26Q9P289 416 aa19.55■□□□□ 0.72
CUX1-215ENST00000556210 CCDC144AA2RUR9 1427 aa19.55■□□□□ 0.72
CUX1-215ENST00000556210 SLC24A1O60721 1099 aa19.54■□□□□ 0.72
CUX1-215ENST00000556210 ANKRD30BQ9BXX2 1392 aa19.54■□□□□ 0.72
CUX1-215ENST00000556210 SPAG9O60271 1321 aaKnown RBP19.54■□□□□ 0.72
CUX1-215ENST00000556210 PTPN23Q9H3S7 1636 aa19.54■□□□□ 0.72
CUX1-215ENST00000556210 NLRP13Q86W25 1043 aa19.54■□□□□ 0.72
CUX1-215ENST00000556210 THOC2Q8NI27 1593 aaKnown RBP19.52■□□□□ 0.72
CUX1-215ENST00000556210 AKNAQ7Z591 1439 aa19.52■□□□□ 0.72
CUX1-215ENST00000556210 SUPT6HQ7KZ85 1726 aaKnown RBP19.52■□□□□ 0.72
CUX1-215ENST00000556210 RALBP1Q15311 655 aa19.52■□□□□ 0.71
CUX1-215ENST00000556210 MIA2Q96PC5 1412 aa19.51■□□□□ 0.71
CUX1-215ENST00000556210 IQGAP2Q13576 1575 aa19.5■□□□□ 0.71
CUX1-215ENST00000556210 PLEKHG5O94827 1062 aa19.5■□□□□ 0.71
CUX1-215ENST00000556210 ARXQ96QS3 562 aa19.5■□□□□ 0.71
CUX1-215ENST00000556210 TRAK1Q9UPV9 953 aa19.5■□□□□ 0.71
CUX1-215ENST00000556210 LAMC3Q9Y6N6 1575 aa19.5■□□□□ 0.71
CUX1-215ENST00000556210 TROQ12816 1431 aaPredicted RBP19.49■□□□□ 0.71
CUX1-215ENST00000556210 MLECQ14165 292 aa19.49■□□□□ 0.71
CUX1-215ENST00000556210 MYBBP1AQ9BQG0 1328 aaKnown RBP19.49■□□□□ 0.71
CUX1-215ENST00000556210 CUL7Q14999 1698 aa19.47■□□□□ 0.71
CUX1-215ENST00000556210 RRP7AQ9Y3A4 280 aaKnown RBP19.47■□□□□ 0.71
CUX1-215ENST00000556210 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.46■□□□□ 0.71
CUX1-215ENST00000556210 RTN4Q9NQC3 1192 aaKnown RBP19.46■□□□□ 0.71
CUX1-215ENST00000556210 ARHGEF11O15085 1522 aa19.46■□□□□ 0.71
CUX1-215ENST00000556210 KIAA0586Q9BVV6 1533 aa19.46■□□□□ 0.71
CUX1-215ENST00000556210 CDCA8Q53HL2 280 aa19.45■□□□□ 0.7
CUX1-215ENST00000556210 U2SURPO15042 1029 aaKnown RBP19.45■□□□□ 0.7
CUX1-215ENST00000556210 SKAP1Q86WV1 359 aa19.44■□□□□ 0.7
CUX1-215ENST00000556210 IFT140Q96RY7 1462 aa19.44■□□□□ 0.7
CUX1-215ENST00000556210 C9orf84Q5VXU9 1444 aa19.44■□□□□ 0.7
CUX1-215ENST00000556210 PNISRQ8TF01 805 aaKnown RBP19.44■□□□□ 0.7
CUX1-215ENST00000556210 HECW1Q76N89 1606 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms