RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ARHGEF12Q9NZN5 1544 aa18.23■□□□□ 0.51
SHMT2-216ENST00000554975 SPATA31D1Q6ZQQ2 1576 aa18.22■□□□□ 0.51
SHMT2-216ENST00000554975 CHIC1Q5VXU3 224 aa18.22■□□□□ 0.51
SHMT2-216ENST00000554975 MAGI2Q86UL8 1455 aa18.2■□□□□ 0.5
SHMT2-216ENST00000554975 PLEKHD1A6NEE1 506 aa18.18■□□□□ 0.5
SHMT2-216ENST00000554975 CEBPAP49715 358 aaPredicted RBP18.18■□□□□ 0.5
SHMT2-216ENST00000554975 RANGAP1P46060 587 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-216ENST00000554975 SETD1BQ9UPS6 1966 aaKnown RBP18.17■□□□□ 0.5
SHMT2-216ENST00000554975 CDK13Q14004 1512 aaKnown RBP18.16■□□□□ 0.5
SHMT2-216ENST00000554975 SCAPERQ9BY12 1400 aa18.15■□□□□ 0.5
SHMT2-216ENST00000554975 ATP10AO60312 1499 aa18.14■□□□□ 0.49
SHMT2-216ENST00000554975 C9orf84Q5VXU9 1444 aa18.13■□□□□ 0.49
SHMT2-216ENST00000554975 MYO5CQ9NQX4 1742 aa18.12■□□□□ 0.49
SHMT2-216ENST00000554975 C3P01024 1663 aa18.11■□□□□ 0.49
SHMT2-216ENST00000554975 PLCH2O75038 1416 aa18.1■□□□□ 0.49
SHMT2-216ENST00000554975 LTBP4Q8N2S1 1624 aa18.09■□□□□ 0.49
SHMT2-216ENST00000554975 UHRF1BP1Q6BDS2 1440 aa18.09■□□□□ 0.49
SHMT2-216ENST00000554975 CSRNP3Q8WYN3 585 aa18.09■□□□□ 0.49
SHMT2-216ENST00000554975 KIF14Q15058 1648 aa18.05■□□□□ 0.48
SHMT2-216ENST00000554975 DIP2CQ9Y2E4 1556 aa18.05■□□□□ 0.48
SHMT2-216ENST00000554975 DMRT2Q9Y5R5 561 aa18.05■□□□□ 0.48
SHMT2-216ENST00000554975 PTPRTO14522 1441 aa18.05■□□□□ 0.48
SHMT2-216ENST00000554975 KDM5CP41229 1560 aa18.04■□□□□ 0.48
SHMT2-216ENST00000554975 ABCA6Q8N139 1617 aa18.03■□□□□ 0.48
SHMT2-216ENST00000554975 ZNF518AQ6AHZ1 1483 aa18■□□□□ 0.47
SHMT2-216ENST00000554975 REREQ9P2R6 1566 aa18■□□□□ 0.47
SHMT2-216ENST00000554975 AFAP1Q8N556 730 aa17.99■□□□□ 0.47
SHMT2-216ENST00000554975 LRRIQ1Q96JM4 1722 aa17.98■□□□□ 0.47
SHMT2-216ENST00000554975 CDC42BPBQ9Y5S2 1711 aa17.98■□□□□ 0.47
SHMT2-216ENST00000554975 EFCAB2Q5VUJ9 269 aa17.98■□□□□ 0.47
SHMT2-216ENST00000554975 IQSEC2Q5JU85 1478 aa17.97■□□□□ 0.47
SHMT2-216ENST00000554975 NCOA1Q15788 1441 aa17.97■□□□□ 0.47
SHMT2-216ENST00000554975 ARHGAP5Q13017 1502 aa17.96■□□□□ 0.47
SHMT2-216ENST00000554975 AGLP35573 1532 aa17.93■□□□□ 0.46
SHMT2-216ENST00000554975 KIDINS220Q9ULH0 1771 aa17.92■□□□□ 0.46
SHMT2-216ENST00000554975 TRAPPC8Q9Y2L5 1435 aa17.92■□□□□ 0.46
SHMT2-216ENST00000554975 CAMSAP1Q5T5Y3 1602 aa17.92■□□□□ 0.46
SHMT2-216ENST00000554975 ITSN2Q9NZM3 1697 aa17.92■□□□□ 0.46
SHMT2-216ENST00000554975 MLH3Q9UHC1 1453 aa17.9■□□□□ 0.46
SHMT2-216ENST00000554975 MYT1LQ9UL68 1186 aa17.9■□□□□ 0.46
SHMT2-216ENST00000554975 ATP1B4Q9UN42 357 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-216ENST00000554975 TROQ12816 1431 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-216ENST00000554975 EEA1Q15075 1411 aa17.89■□□□□ 0.45
SHMT2-216ENST00000554975 ABCC1P33527 1531 aa17.88■□□□□ 0.45
SHMT2-216ENST00000554975 PREX2Q70Z35 1606 aa17.88■□□□□ 0.45
SHMT2-216ENST00000554975 MROH2AA6NES4 1674 aa17.88■□□□□ 0.45
SHMT2-216ENST00000554975 SUPT6HQ7KZ85 1726 aaKnown RBP17.87■□□□□ 0.45
SHMT2-216ENST00000554975 ZNF335Q9H4Z2 1342 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-216ENST00000554975 NCKAP5LQ9HCH0 1330 aa17.85■□□□□ 0.45
SHMT2-216ENST00000554975 ARHGAP35Q9NRY4 1499 aa17.85■□□□□ 0.45
SHMT2-216ENST00000554975 ZNF142P52746 1687 aaPredicted RBP17.84■□□□□ 0.45
SHMT2-216ENST00000554975 CDC42BPAQ5VT25 1732 aa17.84■□□□□ 0.45
SHMT2-216ENST00000554975 UBAP1LF5GYI3 381 aa17.83■□□□□ 0.44
SHMT2-216ENST00000554975 MYO3AQ8NEV4 1616 aa17.83■□□□□ 0.44
SHMT2-216ENST00000554975 FMN1Q68DA7 1419 aa17.82■□□□□ 0.44
SHMT2-216ENST00000554975 CNTLNQ9NXG0 1405 aa17.82■□□□□ 0.44
SHMT2-216ENST00000554975 ESF1Q9H501 851 aaKnown RBP17.82■□□□□ 0.44
SHMT2-216ENST00000554975 CLTCQ00610 1675 aaKnown RBP17.82■□□□□ 0.44
SHMT2-216ENST00000554975 CLIP1P30622 1438 aa17.81■□□□□ 0.44
SHMT2-216ENST00000554975 NPATQ14207 1427 aa17.81■□□□□ 0.44
SHMT2-216ENST00000554975 MED1Q15648 1581 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-216ENST00000554975 CDK11AQ9UQ88 783 aaPredicted RBP17.8■□□□□ 0.44
SHMT2-216ENST00000554975 EHMT2Q96KQ7 1210 aa17.79■□□□□ 0.44
SHMT2-216ENST00000554975 SAMD9LQ8IVG5 1584 aa17.79■□□□□ 0.44
SHMT2-216ENST00000554975 ZMYM3Q14202 1370 aa17.78■□□□□ 0.44
SHMT2-216ENST00000554975 CEP170BQ9Y4F5 1589 aaPredicted RBP17.77■□□□□ 0.44
SHMT2-216ENST00000554975 TCOF1Q13428 1488 aaKnown RBP17.76■□□□□ 0.43
SHMT2-216ENST00000554975 PLA2R1Q13018 1463 aa17.75■□□□□ 0.43
SHMT2-216ENST00000554975 SYCP2Q9BX26 1530 aa17.72■□□□□ 0.43
SHMT2-216ENST00000554975 PLXNC1O60486 1568 aa17.72■□□□□ 0.43
SHMT2-216ENST00000554975 HSPA1LP34931 641 aa17.72■□□□□ 0.43
SHMT2-216ENST00000554975 PTPRKQ15262 1439 aa17.72■□□□□ 0.43
SHMT2-216ENST00000554975 POLR1AO95602 1720 aaPredicted RBP17.7■□□□□ 0.42
SHMT2-216ENST00000554975 UBTFP17480 764 aaKnown RBP17.69■□□□□ 0.42
SHMT2-216ENST00000554975 PKD2Q13563 968 aa17.69■□□□□ 0.42
SHMT2-216ENST00000554975 INO80Q9ULG1 1556 aaPredicted RBP17.69■□□□□ 0.42
SHMT2-216ENST00000554975 ATP7AQ04656 1500 aa17.68■□□□□ 0.42
SHMT2-216ENST00000554975 DNMT1P26358 1616 aaKnown RBP17.68■□□□□ 0.42
SHMT2-216ENST00000554975 NEURL4Q96JN8 1562 aa17.67■□□□□ 0.42
SHMT2-216ENST00000554975 PPP6R1Q9UPN7 881 aa17.67■□□□□ 0.42
SHMT2-216ENST00000554975 ALKQ9UM73 1620 aa17.66■□□□□ 0.42
SHMT2-216ENST00000554975 PIP4K2BP78356 416 aa17.66■□□□□ 0.42
SHMT2-216ENST00000554975 SCAF1Q9H7N4 1312 aaKnown RBP17.66■□□□□ 0.42
SHMT2-216ENST00000554975 ZNF777Q9ULD5 760 aaPredicted RBP17.65■□□□□ 0.42
SHMT2-216ENST00000554975 A2MP01023 1474 aa17.64■□□□□ 0.41
SHMT2-216ENST00000554975 CCDC18Q5T9S5 1454 aa17.64■□□□□ 0.41
SHMT2-216ENST00000554975 HNRNPMP52272 730 aaKnown RBP eCLIP17.64■□□□□ 0.41
SHMT2-216ENST00000554975 SPAG9O60271 1321 aaKnown RBP17.64■□□□□ 0.41
SHMT2-216ENST00000554975 CASKIN1Q8WXD9 1431 aa17.63■□□□□ 0.41
SHMT2-216ENST00000554975 A2ML1A8K2U0 1454 aa17.63■□□□□ 0.41
SHMT2-216ENST00000554975 GPATCH8Q9UKJ3 1502 aaKnown RBP17.62■□□□□ 0.41
SHMT2-216ENST00000554975 ADGBQ8N7X0 1667 aa17.61■□□□□ 0.41
SHMT2-216ENST00000554975 GGT6Q6P531 493 aa17.61■□□□□ 0.41
SHMT2-216ENST00000554975 CPS1P31327 1500 aa17.61■□□□□ 0.41
SHMT2-216ENST00000554975 SHANK2Q9UPX8 1470 aa17.6■□□□□ 0.41
SHMT2-216ENST00000554975 VWDEQ8N2E2 1590 aa17.59■□□□□ 0.41
SHMT2-216ENST00000554975 STRCP1A6NGW2 1772 aa17.58■□□□□ 0.4
SHMT2-216ENST00000554975 TOM1O60784 492 aa17.57■□□□□ 0.4
SHMT2-216ENST00000554975 KIAA1107Q9UPP5 1409 aa17.55■□□□□ 0.4
SHMT2-216ENST00000554975 FYCO1Q9BQS8 1478 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms