RNA–Protein interactions for RNA: ENST00000553998.5

ABCD4-220, Transcript of ATP binding cassette subfamily D member 4, humanhuman

TSL 3

Gene ABCD4, Length 478 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD4-220ENST00000553998 PLPPR3Q6T4P5 718 aa12.95□□□□□ -0.34
ABCD4-220ENST00000553998 SIGLEC1Q9BZZ2 1709 aa12.95□□□□□ -0.34
ABCD4-220ENST00000553998 EEA1Q15075 1411 aa12.95□□□□□ -0.34
ABCD4-220ENST00000553998 SOCS7O14512 581 aa12.94□□□□□ -0.34
ABCD4-220ENST00000553998 EFCAB2Q5VUJ9 269 aa12.93□□□□□ -0.34
ABCD4-220ENST00000553998 ILDR2Q71H61 639 aa12.93□□□□□ -0.34
ABCD4-220ENST00000553998 C9orf84Q5VXU9 1444 aa12.93□□□□□ -0.34
ABCD4-220ENST00000553998 CEBPAP49715 358 aaPredicted RBP12.92□□□□□ -0.34
ABCD4-220ENST00000553998 RANGAP1P46060 587 aaPredicted RBP12.91□□□□□ -0.34
ABCD4-220ENST00000553998 DISP3Q9P2K9 1392 aa12.9□□□□□ -0.34
ABCD4-220ENST00000553998 PTPRTO14522 1441 aa12.88□□□□□ -0.35
ABCD4-220ENST00000553998 UHRF1BP1Q6BDS2 1440 aa12.88□□□□□ -0.35
ABCD4-220ENST00000553998 AFAP1Q8N556 730 aa12.87□□□□□ -0.35
ABCD4-220ENST00000553998 CDK11AQ9UQ88 783 aaPredicted RBP12.87□□□□□ -0.35
ABCD4-220ENST00000553998 CDK13Q14004 1512 aaKnown RBP12.87□□□□□ -0.35
ABCD4-220ENST00000553998 FER1L4A9Z1Z3 1794 aa12.86□□□□□ -0.35
ABCD4-220ENST00000553998 ZNF518AQ6AHZ1 1483 aa12.86□□□□□ -0.35
ABCD4-220ENST00000553998 PREX1Q8TCU6 1659 aa12.86□□□□□ -0.35
ABCD4-220ENST00000553998 STRCQ7RTU9 1775 aa12.84□□□□□ -0.35
ABCD4-220ENST00000553998 KDM5CP41229 1560 aa12.84□□□□□ -0.35
ABCD4-220ENST00000553998 REREQ9P2R6 1566 aa12.84□□□□□ -0.35
ABCD4-220ENST00000553998 FMN1Q68DA7 1419 aa12.83□□□□□ -0.36
ABCD4-220ENST00000553998 IQSEC2Q5JU85 1478 aa12.83□□□□□ -0.36
ABCD4-220ENST00000553998 MLH3Q9UHC1 1453 aa12.83□□□□□ -0.36
ABCD4-220ENST00000553998 TRAPPC8Q9Y2L5 1435 aa12.82□□□□□ -0.36
ABCD4-220ENST00000553998 LTBP4Q8N2S1 1624 aa12.81□□□□□ -0.36
ABCD4-220ENST00000553998 TROQ12816 1431 aaPredicted RBP12.81□□□□□ -0.36
ABCD4-220ENST00000553998 AGLP35573 1532 aa12.81□□□□□ -0.36
ABCD4-220ENST00000553998 SETD1BQ9UPS6 1966 aaKnown RBP12.8□□□□□ -0.36
ABCD4-220ENST00000553998 CHIC1Q5VXU3 224 aa12.79□□□□□ -0.36
ABCD4-220ENST00000553998 NCOA1Q15788 1441 aa12.79□□□□□ -0.36
ABCD4-220ENST00000553998 DIP2CQ9Y2E4 1556 aa12.78□□□□□ -0.36
ABCD4-220ENST00000553998 CNTLNQ9NXG0 1405 aa12.78□□□□□ -0.36
ABCD4-220ENST00000553998 ARHGAP35Q9NRY4 1499 aa12.78□□□□□ -0.36
ABCD4-220ENST00000553998 ATP1B4Q9UN42 357 aaPredicted RBP12.77□□□□□ -0.37
ABCD4-220ENST00000553998 ARHGAP5Q13017 1502 aa12.77□□□□□ -0.37
ABCD4-220ENST00000553998 ESF1Q9H501 851 aaKnown RBP12.76□□□□□ -0.37
ABCD4-220ENST00000553998 CLIP1P30622 1438 aa12.76□□□□□ -0.37
ABCD4-220ENST00000553998 KIF14Q15058 1648 aa12.76□□□□□ -0.37
ABCD4-220ENST00000553998 MYO5CQ9NQX4 1742 aa12.76□□□□□ -0.37
ABCD4-220ENST00000553998 NPATQ14207 1427 aa12.75□□□□□ -0.37
ABCD4-220ENST00000553998 MYT1LQ9UL68 1186 aa12.75□□□□□ -0.37
ABCD4-220ENST00000553998 SPATA31D1Q6ZQQ2 1576 aa12.73□□□□□ -0.37
ABCD4-220ENST00000553998 UBTFP17480 764 aaKnown RBP12.73□□□□□ -0.37
ABCD4-220ENST00000553998 C3P01024 1663 aa12.73□□□□□ -0.37
ABCD4-220ENST00000553998 ABCA6Q8N139 1617 aa12.73□□□□□ -0.37
ABCD4-220ENST00000553998 ZMYM3Q14202 1370 aa12.72□□□□□ -0.37
ABCD4-220ENST00000553998 ABCC1P33527 1531 aa12.71□□□□□ -0.38
ABCD4-220ENST00000553998 PKD2Q13563 968 aa12.7□□□□□ -0.38
ABCD4-220ENST00000553998 ZNF335Q9H4Z2 1342 aaPredicted RBP12.68□□□□□ -0.38
ABCD4-220ENST00000553998 NCKAP5LQ9HCH0 1330 aa12.68□□□□□ -0.38
ABCD4-220ENST00000553998 PPP6R1Q9UPN7 881 aa12.68□□□□□ -0.38
ABCD4-220ENST00000553998 CAMSAP1Q5T5Y3 1602 aa12.68□□□□□ -0.38
ABCD4-220ENST00000553998 CDC42BPBQ9Y5S2 1711 aa12.68□□□□□ -0.38
ABCD4-220ENST00000553998 PLA2R1Q13018 1463 aa12.67□□□□□ -0.38
ABCD4-220ENST00000553998 UBAP1LF5GYI3 381 aa12.67□□□□□ -0.38
ABCD4-220ENST00000553998 CASKIN1Q8WXD9 1431 aa12.67□□□□□ -0.38
ABCD4-220ENST00000553998 KIDINS220Q9ULH0 1771 aa12.66□□□□□ -0.38
ABCD4-220ENST00000553998 TCOF1Q13428 1488 aaKnown RBP12.66□□□□□ -0.38
ABCD4-220ENST00000553998 PREX2Q70Z35 1606 aa12.66□□□□□ -0.38
ABCD4-220ENST00000553998 CCDC18Q5T9S5 1454 aa12.65□□□□□ -0.38
ABCD4-220ENST00000553998 KIAA1107Q9UPP5 1409 aa12.65□□□□□ -0.38
ABCD4-220ENST00000553998 SAMD9LQ8IVG5 1584 aa12.64□□□□□ -0.39
ABCD4-220ENST00000553998 SPAG9O60271 1321 aaKnown RBP12.64□□□□□ -0.39
ABCD4-220ENST00000553998 PTPRKQ15262 1439 aa12.64□□□□□ -0.39
ABCD4-220ENST00000553998 MROH2AA6NES4 1674 aa12.64□□□□□ -0.39
ABCD4-220ENST00000553998 ITSN2Q9NZM3 1697 aa12.64□□□□□ -0.39
ABCD4-220ENST00000553998 HNRNPMP52272 730 aaKnown RBP eCLIP12.63□□□□□ -0.39
ABCD4-220ENST00000553998 GPATCH8Q9UKJ3 1502 aaKnown RBP12.62□□□□□ -0.39
ABCD4-220ENST00000553998 EHMT2Q96KQ7 1210 aa12.61□□□□□ -0.39
ABCD4-220ENST00000553998 LRRIQ1Q96JM4 1722 aa12.61□□□□□ -0.39
ABCD4-220ENST00000553998 ZNF777Q9ULD5 760 aaPredicted RBP12.6□□□□□ -0.39
ABCD4-220ENST00000553998 PLXNC1O60486 1568 aa12.6□□□□□ -0.39
ABCD4-220ENST00000553998 A2MP01023 1474 aa12.59□□□□□ -0.39
ABCD4-220ENST00000553998 PLEKHH2Q8IVE3 1493 aa12.59□□□□□ -0.39
ABCD4-220ENST00000553998 GGT6Q6P531 493 aa12.58□□□□□ -0.4
ABCD4-220ENST00000553998 CFDP1Q9UEE9 299 aaPredicted RBP12.58□□□□□ -0.4
ABCD4-220ENST00000553998 CEP170BQ9Y4F5 1589 aaPredicted RBP12.58□□□□□ -0.4
ABCD4-220ENST00000553998 ZNF142P52746 1687 aaPredicted RBP12.57□□□□□ -0.4
ABCD4-220ENST00000553998 SYCP2Q9BX26 1530 aa12.57□□□□□ -0.4
ABCD4-220ENST00000553998 HSPA1LP34931 641 aa12.57□□□□□ -0.4
ABCD4-220ENST00000553998 A2ML1A8K2U0 1454 aa12.57□□□□□ -0.4
ABCD4-220ENST00000553998 ATP7AQ04656 1500 aa12.57□□□□□ -0.4
ABCD4-220ENST00000553998 CDC42BPAQ5VT25 1732 aa12.57□□□□□ -0.4
ABCD4-220ENST00000553998 TOM1O60784 492 aa12.56□□□□□ -0.4
ABCD4-220ENST00000553998 FYCO1Q9BQS8 1478 aa12.56□□□□□ -0.4
ABCD4-220ENST00000553998 MYO3AQ8NEV4 1616 aa12.55□□□□□ -0.4
ABCD4-220ENST00000553998 INO80Q9ULG1 1556 aaPredicted RBP12.55□□□□□ -0.4
ABCD4-220ENST00000553998 RTEL1-TNFRSF6BF6WH68 1400 aa12.54□□□□□ -0.4
ABCD4-220ENST00000553998 DHX29Q7Z478 1369 aaKnown RBP12.54□□□□□ -0.4
ABCD4-220ENST00000553998 MBD5Q9P267 1494 aa12.53□□□□□ -0.4
ABCD4-220ENST00000553998 CPS1P31327 1500 aa12.53□□□□□ -0.4
ABCD4-220ENST00000553998 CCNB3Q8WWL7 1395 aa12.53□□□□□ -0.4
ABCD4-220ENST00000553998 SHANK2Q9UPX8 1470 aa12.53□□□□□ -0.4
ABCD4-220ENST00000553998 CLTCQ00610 1675 aaKnown RBP12.52□□□□□ -0.4
ABCD4-220ENST00000553998 DNMT1P26358 1616 aaKnown RBP12.51□□□□□ -0.41
ABCD4-220ENST00000553998 SUPT6HQ7KZ85 1726 aaKnown RBP12.51□□□□□ -0.41
ABCD4-220ENST00000553998 FBXO31Q5XUX0 539 aaPredicted RBP12.51□□□□□ -0.41
ABCD4-220ENST00000553998 PIP4K2BP78356 416 aa12.5□□□□□ -0.41
ABCD4-220ENST00000553998 ANKLE2Q86XL3 938 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms