RNA–Protein interactions for RNA: ENST00000553889.5

PRKCH-209, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-209	ENST00000553889	ATP10B	O94823	1461 aa		13.23	□□□□□ -0.29
PRKCH-209	ENST00000553889	SHANK2	Q9UPX8	1470 aa		13.23	□□□□□ -0.29
PRKCH-209	ENST00000553889	TONSL	Q96HA7	1378 aa		13.23	□□□□□ -0.29
PRKCH-209	ENST00000553889	CAMSAP2	Q08AD1	1489 aa		13.22	□□□□□ -0.29
PRKCH-209	ENST00000553889	NCOA1	Q15788	1441 aa		13.21	□□□□□ -0.3
PRKCH-209	ENST00000553889	KDM6B	O15054	1643 aa		13.21	□□□□□ -0.3
PRKCH-209	ENST00000553889	CROCC2	H7BZ55	1655 aa		13.2	□□□□□ -0.3
PRKCH-209	ENST00000553889	ADGB	Q8N7X0	1667 aa		13.2	□□□□□ -0.3
PRKCH-209	ENST00000553889	ANKRD30B	Q9BXX2	1392 aa		13.2	□□□□□ -0.3
PRKCH-209	ENST00000553889	PLEKHD1	A6NEE1	506 aa		13.19	□□□□□ -0.3
PRKCH-209	ENST00000553889	RRP7BP	Q9NSQ0	103 aa		13.19	□□□□□ -0.3
PRKCH-209	ENST00000553889	KIF14	Q15058	1648 aa		13.19	□□□□□ -0.3
PRKCH-209	ENST00000553889	PTPRG	P23470	1445 aa		13.19	□□□□□ -0.3
PRKCH-209	ENST00000553889	MPHOSPH9	Q99550	1183 aa		13.18	□□□□□ -0.3
PRKCH-209	ENST00000553889	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.18	□□□□□ -0.3
PRKCH-209	ENST00000553889	ARHGEF5	Q12774	1597 aa		13.18	□□□□□ -0.3
PRKCH-209	ENST00000553889	RPRD2	Q5VT52	1461 aa	Known RBP	13.16	□□□□□ -0.3
PRKCH-209	ENST00000553889	FBLN2	P98095	1184 aa		13.16	□□□□□ -0.3
PRKCH-209	ENST00000553889	CDC42BPA	Q5VT25	1732 aa		13.16	□□□□□ -0.3
PRKCH-209	ENST00000553889	RSPH4A	Q5TD94	716 aa		13.15	□□□□□ -0.3
PRKCH-209	ENST00000553889	CHIC2	Q9UKJ5	165 aa		13.15	□□□□□ -0.3
PRKCH-209	ENST00000553889	ANKRD30A	Q9BXX3	1397 aa		13.15	□□□□□ -0.3
PRKCH-209	ENST00000553889	ZNF644	Q9H582	1327 aa	Predicted RBP	13.14	□□□□□ -0.31
PRKCH-209	ENST00000553889	CHD1	O14646	1710 aa		13.14	□□□□□ -0.31
PRKCH-209	ENST00000553889	PZP	P20742	1482 aa		13.14	□□□□□ -0.31
PRKCH-209	ENST00000553889	KDM5D	Q9BY66	1539 aa		13.13	□□□□□ -0.31
PRKCH-209	ENST00000553889	UHRF1BP1L	A0JNW5	1464 aa		13.12	□□□□□ -0.31
PRKCH-209	ENST00000553889	CCER2	I3L3R5	266 aa		13.11	□□□□□ -0.31
PRKCH-209	ENST00000553889	TEX14	Q8IWB6	1497 aa		13.1	□□□□□ -0.31
PRKCH-209	ENST00000553889	MBD5	Q9P267	1494 aa		13.1	□□□□□ -0.31
PRKCH-209	ENST00000553889	CLASP1	Q7Z460	1538 aa		13.1	□□□□□ -0.31
PRKCH-209	ENST00000553889	ABCC2	Q92887	1545 aa		13.1	□□□□□ -0.31
PRKCH-209	ENST00000553889	TRIM52	Q96A61	297 aa		13.1	□□□□□ -0.31
PRKCH-209	ENST00000553889	PREX2	Q70Z35	1606 aa		13.1	□□□□□ -0.31
PRKCH-209	ENST00000553889	KIAA1107	Q9UPP5	1409 aa		13.09	□□□□□ -0.31
PRKCH-209	ENST00000553889	MAST1	Q9Y2H9	1570 aa		13.09	□□□□□ -0.31
PRKCH-209	ENST00000553889	GTF3C3	Q9Y5Q9	886 aa		13.09	□□□□□ -0.31
PRKCH-209	ENST00000553889	C9orf84	Q5VXU9	1444 aa		13.08	□□□□□ -0.32
PRKCH-209	ENST00000553889	ANKRD50	Q9ULJ7	1429 aa		13.08	□□□□□ -0.32
PRKCH-209	ENST00000553889	ARID3C	A6NKF2	412 aa		13.08	□□□□□ -0.32
PRKCH-209	ENST00000553889	PLEKHH2	Q8IVE3	1493 aa		13.07	□□□□□ -0.32
PRKCH-209	ENST00000553889	CCDC141	Q6ZP82	1450 aa		13.05	□□□□□ -0.32
PRKCH-209	ENST00000553889	L3MBTL2	Q969R5	705 aa		13.05	□□□□□ -0.32
PRKCH-209	ENST00000553889	SLC4A1AP	Q9BWU0	796 aa	Known RBP	13.05	□□□□□ -0.32
PRKCH-209	ENST00000553889	CDC42BPB	Q9Y5S2	1711 aa		13.05	□□□□□ -0.32
PRKCH-209	ENST00000553889	DDX10	Q13206	875 aa	Known RBP	13.03	□□□□□ -0.32
PRKCH-209	ENST00000553889	SPATA31E1	Q6ZUB1	1445 aa		13.03	□□□□□ -0.32
PRKCH-209	ENST00000553889	ARAP3	Q8WWN8	1544 aa		13.03	□□□□□ -0.32
PRKCH-209	ENST00000553889	SAMD9L	Q8IVG5	1584 aa		13.03	□□□□□ -0.32
PRKCH-209	ENST00000553889	TSPY4	P0CV99	314 aa		13.02	□□□□□ -0.33
PRKCH-209	ENST00000553889	TSPY10	P0CW01	314 aa		13.02	□□□□□ -0.33
PRKCH-209	ENST00000553889	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.02	□□□□□ -0.33
PRKCH-209	ENST00000553889	UHRF1BP1	Q6BDS2	1440 aa		13.02	□□□□□ -0.33
PRKCH-209	ENST00000553889	ARHGEF12	Q9NZN5	1544 aa		13.02	□□□□□ -0.33
PRKCH-209	ENST00000553889	PELP1	Q8IZL8	1130 aa	Known RBP	13.01	□□□□□ -0.33
PRKCH-209	ENST00000553889	YTHDC1	Q96MU7	727 aa	Known RBP	13.01	□□□□□ -0.33
PRKCH-209	ENST00000553889	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	13.01	□□□□□ -0.33
PRKCH-209	ENST00000553889	PLXNC1	O60486	1568 aa		13	□□□□□ -0.33
PRKCH-209	ENST00000553889	KIF15	Q9NS87	1388 aa		12.99	□□□□□ -0.33
PRKCH-209	ENST00000553889	HSPA5	P11021	654 aa	Known RBP	12.99	□□□□□ -0.33
PRKCH-209	ENST00000553889	ANP32C	O43423	234 aa		12.98	□□□□□ -0.33
PRKCH-209	ENST00000553889	PLCH2	O75038	1416 aa		12.97	□□□□□ -0.33
PRKCH-209	ENST00000553889	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.97	□□□□□ -0.33
PRKCH-209	ENST00000553889	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.97	□□□□□ -0.33
PRKCH-209	ENST00000553889	ERCC6L2	Q5T890	1561 aa		12.97	□□□□□ -0.33
PRKCH-209	ENST00000553889	TTC37	Q6PGP7	1564 aa		12.97	□□□□□ -0.33
PRKCH-209	ENST00000553889	POLR1A	O95602	1720 aa	Predicted RBP	12.96	□□□□□ -0.33
PRKCH-209	ENST00000553889	MYO5C	Q9NQX4	1742 aa		12.96	□□□□□ -0.33
PRKCH-209	ENST00000553889	WASHC2A	Q641Q2	1341 aa		12.96	□□□□□ -0.33
PRKCH-209	ENST00000553889	UNC13B	O14795	1591 aa		12.96	□□□□□ -0.33
PRKCH-209	ENST00000553889	NBPF8	Q3BBV2	869 aa		12.96	□□□□□ -0.33
PRKCH-209	ENST00000553889	NUP155	O75694	1391 aa		12.95	□□□□□ -0.34
PRKCH-209	ENST00000553889	PKD2	Q13563	968 aa		12.95	□□□□□ -0.34
PRKCH-209	ENST00000553889	ATP10A	O60312	1499 aa		12.95	□□□□□ -0.34
PRKCH-209	ENST00000553889	MAGI2	Q86UL8	1455 aa		12.95	□□□□□ -0.34
PRKCH-209	ENST00000553889	ZCCHC11	Q5TAX3	1644 aa	Known RBP	12.94	□□□□□ -0.34
PRKCH-209	ENST00000553889	CCDC7	Q96M83	1385 aa		12.94	□□□□□ -0.34
PRKCH-209	ENST00000553889	HNRNPM	P52272	730 aa	Known RBP eCLIP	12.93	□□□□□ -0.34
PRKCH-209	ENST00000553889	FOXD1	Q16676	465 aa		12.93	□□□□□ -0.34
PRKCH-209	ENST00000553889	RTEL1-TNFRSF6B	F6WH68	1400 aa		12.93	□□□□□ -0.34
PRKCH-209	ENST00000553889	CNTLN	Q9NXG0	1405 aa		12.93	□□□□□ -0.34
PRKCH-209	ENST00000553889	ARHGAP5	Q13017	1502 aa		12.93	□□□□□ -0.34
PRKCH-209	ENST00000553889	SYCP2	Q9BX26	1530 aa		12.93	□□□□□ -0.34
PRKCH-209	ENST00000553889	DUOX2	Q9NRD8	1548 aa		12.93	□□□□□ -0.34
PRKCH-209	ENST00000553889	RALGAPB	Q86X10	1494 aa		12.92	□□□□□ -0.34
PRKCH-209	ENST00000553889	ERBIN	Q96RT1	1412 aa		12.92	□□□□□ -0.34
PRKCH-209	ENST00000553889	EFCAB2	Q5VUJ9	269 aa		12.91	□□□□□ -0.34
PRKCH-209	ENST00000553889	FAM135A	Q9P2D6	1515 aa		12.91	□□□□□ -0.34
PRKCH-209	ENST00000553889	IQGAP3	Q86VI3	1631 aa		12.91	□□□□□ -0.34
PRKCH-209	ENST00000553889	ABCC1	P33527	1531 aa		12.89	□□□□□ -0.35
PRKCH-209	ENST00000553889	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.88	□□□□□ -0.35
PRKCH-209	ENST00000553889	WDR7	Q9Y4E6	1490 aa		12.87	□□□□□ -0.35
PRKCH-209	ENST00000553889	KCNH8	Q96L42	1107 aa		12.87	□□□□□ -0.35
PRKCH-209	ENST00000553889	KDM5C	P41229	1560 aa		12.86	□□□□□ -0.35
PRKCH-209	ENST00000553889	ROCK2	O75116	1388 aa	Known RBP	12.85	□□□□□ -0.35
PRKCH-209	ENST00000553889	PLA2R1	Q13018	1463 aa		12.85	□□□□□ -0.35
PRKCH-209	ENST00000553889	ABCA9	Q8IUA7	1624 aa		12.84	□□□□□ -0.35
PRKCH-209	ENST00000553889	GPRASP1	Q5JY77	1395 aa		12.84	□□□□□ -0.35
PRKCH-209	ENST00000553889	C11orf95	C9JLR9	678 aa	Predicted RBP	12.84	□□□□□ -0.35
PRKCH-209	ENST00000553889	KIF7	Q2M1P5	1343 aa		12.84	□□□□□ -0.35

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms