RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 UACAQ9BZF9 1416 aa7.77□□□□□ -1.17
LIMA1-215ENST00000552823 MRS2Q9HD23 443 aa7.77□□□□□ -1.17
LIMA1-215ENST00000552823 TARBP1Q13395 1621 aaKnown RBP7.76□□□□□ -1.17
LIMA1-215ENST00000552823 HFM1A2PYH4 1435 aa7.76□□□□□ -1.17
LIMA1-215ENST00000552823 WASHC2AQ641Q2 1341 aa7.76□□□□□ -1.17
LIMA1-215ENST00000552823 NUP155O75694 1391 aa7.76□□□□□ -1.17
LIMA1-215ENST00000552823 MAP3K1Q13233 1512 aa7.76□□□□□ -1.17
LIMA1-215ENST00000552823 CTTNBP2Q8WZ74 1663 aa7.76□□□□□ -1.17
LIMA1-215ENST00000552823 GRIN2AQ12879 1464 aa7.75□□□□□ -1.17
LIMA1-215ENST00000552823 PTPRGP23470 1445 aa7.75□□□□□ -1.17
LIMA1-215ENST00000552823 CARMIL2Q6F5E8 1435 aa7.74□□□□□ -1.17
LIMA1-215ENST00000552823 PLPPR3Q6T4P5 718 aa7.74□□□□□ -1.17
LIMA1-215ENST00000552823 KIAA0586Q9BVV6 1533 aa7.74□□□□□ -1.17
LIMA1-215ENST00000552823 CARD11Q9BXL7 1154 aa7.74□□□□□ -1.17
LIMA1-215ENST00000552823 PTPN23Q9H3S7 1636 aa7.73□□□□□ -1.17
LIMA1-215ENST00000552823 TIMELESSQ9UNS1 1208 aa7.73□□□□□ -1.17
LIMA1-215ENST00000552823 ABCC5O15440 1437 aa7.73□□□□□ -1.17
LIMA1-215ENST00000552823 NUP153P49790 1475 aaKnown RBP7.73□□□□□ -1.17
LIMA1-215ENST00000552823 CHGAP10645 457 aaKnown RBP7.72□□□□□ -1.17
LIMA1-215ENST00000552823 DISP1Q96F81 1524 aa7.72□□□□□ -1.17
LIMA1-215ENST00000552823 CFAP43Q8NDM7 1665 aa7.72□□□□□ -1.17
LIMA1-215ENST00000552823 KDM6BO15054 1643 aa7.72□□□□□ -1.17
LIMA1-215ENST00000552823 EHBP1L1Q8N3D4 1523 aa7.72□□□□□ -1.17
LIMA1-215ENST00000552823 SUPT6HQ7KZ85 1726 aaKnown RBP7.72□□□□□ -1.17
LIMA1-215ENST00000552823 DAPK1P53355 1430 aa7.71□□□□□ -1.17
LIMA1-215ENST00000552823 ADAMTS12P58397 1594 aa7.71□□□□□ -1.17
LIMA1-215ENST00000552823 ARHGEF11O15085 1522 aa7.7□□□□□ -1.18
LIMA1-215ENST00000552823 UGGT2Q9NYU1 1516 aa7.7□□□□□ -1.18
LIMA1-215ENST00000552823 AFAP1Q8N556 730 aa7.7□□□□□ -1.18
LIMA1-215ENST00000552823 SAMD9Q5K651 1589 aa7.7□□□□□ -1.18
LIMA1-215ENST00000552823 LRRIQ1Q96JM4 1722 aa7.7□□□□□ -1.18
LIMA1-215ENST00000552823 ST20-MTHFSA0A0A6YYL1 179 aa7.7□□□□□ -1.18
LIMA1-215ENST00000552823 PBRM1Q86U86 1689 aa7.7□□□□□ -1.18
LIMA1-215ENST00000552823 EIF4G3O43432 1585 aaKnown RBP7.69□□□□□ -1.18
LIMA1-215ENST00000552823 TROQ12816 1431 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-215ENST00000552823 NBPF1Q3BBV0 1214 aa7.69□□□□□ -1.18
LIMA1-215ENST00000552823 HECW1Q76N89 1606 aa7.69□□□□□ -1.18
LIMA1-215ENST00000552823 ANKRD30AQ9BXX3 1397 aa7.69□□□□□ -1.18
LIMA1-215ENST00000552823 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.69□□□□□ -1.18
LIMA1-215ENST00000552823 PELP1Q8IZL8 1130 aaKnown RBP7.69□□□□□ -1.18
LIMA1-215ENST00000552823 SYNJ2O15056 1496 aa7.68□□□□□ -1.18
LIMA1-215ENST00000552823 KIF7Q2M1P5 1343 aa7.68□□□□□ -1.18
LIMA1-215ENST00000552823 CC2D1BQ5T0F9 858 aaKnown RBP7.67□□□□□ -1.18
LIMA1-215ENST00000552823 WDR62O43379 1518 aa7.67□□□□□ -1.18
LIMA1-215ENST00000552823 ANKRD30BQ9BXX2 1392 aa7.67□□□□□ -1.18
LIMA1-215ENST00000552823 ANKRD50Q9ULJ7 1429 aa7.67□□□□□ -1.18
LIMA1-215ENST00000552823 NUTM2DQ5VT03 806 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-215ENST00000552823 PRKRIP1Q9H875 184 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-215ENST00000552823 GPATCH8Q9UKJ3 1502 aaKnown RBP7.67□□□□□ -1.18
LIMA1-215ENST00000552823 ATP10BO94823 1461 aa7.66□□□□□ -1.18
LIMA1-215ENST00000552823 CCER2I3L3R5 266 aa7.66□□□□□ -1.18
LIMA1-215ENST00000552823 TMC1Q8TDI8 760 aa7.66□□□□□ -1.18
LIMA1-215ENST00000552823 KIF15Q9NS87 1388 aa7.66□□□□□ -1.18
LIMA1-215ENST00000552823 MIA2Q96PC5 1412 aa7.66□□□□□ -1.18
LIMA1-215ENST00000552823 CEP170Q5SW79 1584 aa7.66□□□□□ -1.18
LIMA1-215ENST00000552823 NCOA1Q15788 1441 aa7.65□□□□□ -1.18
LIMA1-215ENST00000552823 CAMSAP2Q08AD1 1489 aa7.65□□□□□ -1.18
LIMA1-215ENST00000552823 KIAA0556O60303 1618 aa7.65□□□□□ -1.18
LIMA1-215ENST00000552823 CCDC7Q96M83 1385 aa7.65□□□□□ -1.19
LIMA1-215ENST00000552823 DENND4BO75064 1496 aaPredicted RBP7.65□□□□□ -1.19
LIMA1-215ENST00000552823 B4GALNT3Q6L9W6 998 aa7.64□□□□□ -1.19
LIMA1-215ENST00000552823 KIF14Q15058 1648 aa7.64□□□□□ -1.19
LIMA1-215ENST00000552823 USP47Q96K76 1375 aa7.64□□□□□ -1.19
LIMA1-215ENST00000552823 KIF3BO15066 747 aa7.63□□□□□ -1.19
LIMA1-215ENST00000552823 GGT6Q6P531 493 aa7.63□□□□□ -1.19
LIMA1-215ENST00000552823 TSHZ2Q9NRE2 1034 aa7.63□□□□□ -1.19
LIMA1-215ENST00000552823 MAGI1Q96QZ7 1491 aaPredicted RBP7.63□□□□□ -1.19
LIMA1-215ENST00000552823 C9orf84Q5VXU9 1444 aa7.63□□□□□ -1.19
LIMA1-215ENST00000552823 RAPGEF6Q8TEU7 1601 aa7.63□□□□□ -1.19
LIMA1-215ENST00000552823 EFCAB2Q5VUJ9 269 aa7.63□□□□□ -1.19
LIMA1-215ENST00000552823 AKNAQ7Z591 1439 aa7.62□□□□□ -1.19
LIMA1-215ENST00000552823 NPM1P06748 294 aaKnown RBP eCLIP7.62□□□□□ -1.19
LIMA1-215ENST00000552823 ROCK2O75116 1388 aaKnown RBP7.61□□□□□ -1.19
LIMA1-215ENST00000552823 TCOF1Q13428 1488 aaKnown RBP7.61□□□□□ -1.19
LIMA1-215ENST00000552823 SPAG9O60271 1321 aaKnown RBP7.6□□□□□ -1.19
LIMA1-215ENST00000552823 TNNT2P45379 298 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-215ENST00000552823 SAFB2Q14151 953 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMA1-215ENST00000552823 ERCC6L2Q5T890 1561 aa7.6□□□□□ -1.19
LIMA1-215ENST00000552823 KIAA1107Q9UPP5 1409 aa7.59□□□□□ -1.19
LIMA1-215ENST00000552823 NUP160Q12769 1436 aa7.59□□□□□ -1.19
LIMA1-215ENST00000552823 ROCK1Q13464 1354 aa7.58□□□□□ -1.2
LIMA1-215ENST00000552823 ARHGAP5Q13017 1502 aa7.58□□□□□ -1.2
LIMA1-215ENST00000552823 CYB5RLQ6IPT4 315 aa7.58□□□□□ -1.2
LIMA1-215ENST00000552823 PZPP20742 1482 aa7.58□□□□□ -1.2
LIMA1-215ENST00000552823 PANK3Q9H999 370 aa7.57□□□□□ -1.2
LIMA1-215ENST00000552823 RPRD2Q5VT52 1461 aaKnown RBP7.57□□□□□ -1.2
LIMA1-215ENST00000552823 PLEKHH2Q8IVE3 1493 aa7.57□□□□□ -1.2
LIMA1-215ENST00000552823 CNTLNQ9NXG0 1405 aa7.57□□□□□ -1.2
LIMA1-215ENST00000552823 MLECQ14165 292 aa7.57□□□□□ -1.2
LIMA1-215ENST00000552823 CCDC144AA2RUR9 1427 aa7.56□□□□□ -1.2
LIMA1-215ENST00000552823 RAPGEF3O95398 923 aa7.55□□□□□ -1.2
LIMA1-215ENST00000552823 CFAP70Q5T0N1 1121 aa7.54□□□□□ -1.2
LIMA1-215ENST00000552823 KDM5BQ9UGL1 1544 aa7.54□□□□□ -1.2
LIMA1-215ENST00000552823 SCAPERQ9BY12 1400 aa7.54□□□□□ -1.2
LIMA1-215ENST00000552823 TMEM132EQ6IEE7 984 aa7.54□□□□□ -1.2
LIMA1-215ENST00000552823 NEUROD2Q15784 382 aa7.54□□□□□ -1.2
LIMA1-215ENST00000552823 STK26Q9P289 416 aa7.54□□□□□ -1.2
LIMA1-215ENST00000552823 PLIN1O60240 522 aa7.53□□□□□ -1.2
LIMA1-215ENST00000552823 CDCA7LQ96GN5 454 aa7.53□□□□□ -1.2
LIMA1-215ENST00000552823 TRAK1Q9UPV9 953 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms