RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 MYT1LQ9UL68 1186 aa6.6□□□□□ -1.35
LIMA1-214ENST00000552783 FYCO1Q9BQS8 1478 aa6.6□□□□□ -1.35
LIMA1-214ENST00000552783 NPM2Q86SE8 214 aaKnown RBP6.6□□□□□ -1.35
LIMA1-214ENST00000552783 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-214ENST00000552783 LRRIQ1Q96JM4 1722 aa6.6□□□□□ -1.35
LIMA1-214ENST00000552783 ZNF777Q9ULD5 760 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-214ENST00000552783 LAS1LQ9Y4W2 734 aaKnown RBP6.59□□□□□ -1.35
LIMA1-214ENST00000552783 ERCC6Q03468 1493 aa6.59□□□□□ -1.35
LIMA1-214ENST00000552783 RAD54L2Q9Y4B4 1467 aa6.59□□□□□ -1.35
LIMA1-214ENST00000552783 ZBTB47Q9UFB7 747 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-214ENST00000552783 SNAPC4Q5SXM2 1469 aa6.58□□□□□ -1.36
LIMA1-214ENST00000552783 FMN1Q68DA7 1419 aa6.58□□□□□ -1.36
LIMA1-214ENST00000552783 PDS5BQ9NTI5 1447 aa6.58□□□□□ -1.36
LIMA1-214ENST00000552783 ANP32AP39687 249 aaKnown RBP6.58□□□□□ -1.36
LIMA1-214ENST00000552783 MPHOSPH9Q99550 1183 aa6.58□□□□□ -1.36
LIMA1-214ENST00000552783 RNF123Q5XPI4 1314 aa6.58□□□□□ -1.36
LIMA1-214ENST00000552783 MYOM3Q5VTT5 1437 aa6.57□□□□□ -1.36
LIMA1-214ENST00000552783 SMG6Q86US8 1419 aaKnown RBP6.57□□□□□ -1.36
LIMA1-214ENST00000552783 NUDCQ9Y266 331 aa6.57□□□□□ -1.36
LIMA1-214ENST00000552783 MAGI3Q5TCQ9 1506 aa6.56□□□□□ -1.36
LIMA1-214ENST00000552783 KIF21AQ7Z4S6 1674 aa6.56□□□□□ -1.36
LIMA1-214ENST00000552783 DHX29Q7Z478 1369 aaKnown RBP6.56□□□□□ -1.36
LIMA1-214ENST00000552783 SPATA31E1Q6ZUB1 1445 aa6.56□□□□□ -1.36
LIMA1-214ENST00000552783 THOC2Q8NI27 1593 aaKnown RBP6.56□□□□□ -1.36
LIMA1-214ENST00000552783 RTL5Q5HYW3 569 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-214ENST00000552783 FANCD2Q9BXW9 1451 aa6.55□□□□□ -1.36
LIMA1-214ENST00000552783 EXOC6Q8TAG9 804 aa6.55□□□□□ -1.36
LIMA1-214ENST00000552783 NEFMP07197 916 aa6.54□□□□□ -1.36
LIMA1-214ENST00000552783 BRPF3Q9ULD4 1205 aa6.54□□□□□ -1.36
LIMA1-214ENST00000552783 PRDM2Q13029 1718 aa6.54□□□□□ -1.36
LIMA1-214ENST00000552783 PNISRQ8TF01 805 aaKnown RBP6.53□□□□□ -1.36
LIMA1-214ENST00000552783 SLC4A3P48751 1232 aa6.53□□□□□ -1.36
LIMA1-214ENST00000552783 TEX14Q8IWB6 1497 aa6.53□□□□□ -1.36
LIMA1-214ENST00000552783 ANKRD30BQ9BXX2 1392 aa6.53□□□□□ -1.36
LIMA1-214ENST00000552783 BCORL1Q5H9F3 1711 aa6.53□□□□□ -1.36
LIMA1-214ENST00000552783 PDE4AP27815 886 aa6.52□□□□□ -1.36
LIMA1-214ENST00000552783 MRC2Q9UBG0 1479 aa6.52□□□□□ -1.37
LIMA1-214ENST00000552783 EFCAB5A4FU69 1503 aa6.52□□□□□ -1.37
LIMA1-214ENST00000552783 ZNF644Q9H582 1327 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-214ENST00000552783 GRIN2BQ13224 1484 aa6.52□□□□□ -1.37
LIMA1-214ENST00000552783 HECW1Q76N89 1606 aa6.52□□□□□ -1.37
LIMA1-214ENST00000552783 PLIN1O60240 522 aa6.51□□□□□ -1.37
LIMA1-214ENST00000552783 WDR62O43379 1518 aa6.51□□□□□ -1.37
LIMA1-214ENST00000552783 UGGT2Q9NYU1 1516 aa6.51□□□□□ -1.37
LIMA1-214ENST00000552783 SLC4A1APQ9BWU0 796 aaKnown RBP6.51□□□□□ -1.37
LIMA1-214ENST00000552783 BACH2Q9BYV9 841 aa6.51□□□□□ -1.37
LIMA1-214ENST00000552783 RPRD2Q5VT52 1461 aaKnown RBP6.51□□□□□ -1.37
LIMA1-214ENST00000552783 CDCA7LQ96GN5 454 aa6.5□□□□□ -1.37
LIMA1-214ENST00000552783 POLA1P09884 1462 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-214ENST00000552783 RRP1P56182 461 aaKnown RBP6.5□□□□□ -1.37
LIMA1-214ENST00000552783 SUPT6HQ7KZ85 1726 aaKnown RBP6.5□□□□□ -1.37
LIMA1-214ENST00000552783 ARHGEF11O15085 1522 aa6.5□□□□□ -1.37
LIMA1-214ENST00000552783 CTTNBP2Q8WZ74 1663 aa6.5□□□□□ -1.37
LIMA1-214ENST00000552783 GCC2Q8IWJ2 1684 aa6.5□□□□□ -1.37
LIMA1-214ENST00000552783 TMC1Q8TDI8 760 aa6.49□□□□□ -1.37
LIMA1-214ENST00000552783 WASHC2CQ9Y4E1 1318 aa6.49□□□□□ -1.37
LIMA1-214ENST00000552783 ABCA5Q8WWZ7 1642 aa6.49□□□□□ -1.37
LIMA1-214ENST00000552783 KDM2AQ9Y2K7 1162 aa6.49□□□□□ -1.37
LIMA1-214ENST00000552783 ABCA10Q8WWZ4 1543 aa6.48□□□□□ -1.37
LIMA1-214ENST00000552783 USP47Q96K76 1375 aa6.48□□□□□ -1.37
LIMA1-214ENST00000552783 CDK13Q14004 1512 aaKnown RBP6.48□□□□□ -1.37
LIMA1-214ENST00000552783 TCOF1Q13428 1488 aaKnown RBP6.48□□□□□ -1.37
LIMA1-214ENST00000552783 CHMP7Q8WUX9 453 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-214ENST00000552783 RCAN3Q9UKA8 241 aa6.48□□□□□ -1.37
LIMA1-214ENST00000552783 SAMD9Q5K651 1589 aa6.47□□□□□ -1.37
LIMA1-214ENST00000552783 EHBP1L1Q8N3D4 1523 aa6.47□□□□□ -1.37
LIMA1-214ENST00000552783 POLR1AO95602 1720 aaPredicted RBP6.47□□□□□ -1.37
LIMA1-214ENST00000552783 URB2Q14146 1524 aaKnown RBP6.47□□□□□ -1.37
LIMA1-214ENST00000552783 C20orf194Q5TEA3 1177 aa6.47□□□□□ -1.37
LIMA1-214ENST00000552783 TCERG1O14776 1098 aaKnown RBP6.46□□□□□ -1.37
LIMA1-214ENST00000552783 LRPPRCP42704 1394 aaKnown RBP6.46□□□□□ -1.37
LIMA1-214ENST00000552783 TOPBP1Q92547 1522 aa6.46□□□□□ -1.37
LIMA1-214ENST00000552783 FRAT1Q92837 279 aaPredicted RBP6.46□□□□□ -1.38
LIMA1-214ENST00000552783 NFKBIBQ15653 356 aa6.46□□□□□ -1.38
LIMA1-214ENST00000552783 CFDP1Q9UEE9 299 aaPredicted RBP6.45□□□□□ -1.38
LIMA1-214ENST00000552783 ABCC5O15440 1437 aa6.45□□□□□ -1.38
LIMA1-214ENST00000552783 ST20-MTHFSA0A0A6YYL1 179 aa6.45□□□□□ -1.38
LIMA1-214ENST00000552783 GSE1Q14687 1217 aa6.45□□□□□ -1.38
LIMA1-214ENST00000552783 CRBNQ96SW2 442 aa6.45□□□□□ -1.38
LIMA1-214ENST00000552783 GAPVD1Q14C86 1478 aa6.45□□□□□ -1.38
LIMA1-214ENST00000552783 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.44□□□□□ -1.388e-10■■■□□ 17.1
LIMA1-214ENST00000552783 PZPP20742 1482 aa6.44□□□□□ -1.38
LIMA1-214ENST00000552783 MIA2Q96PC5 1412 aa6.44□□□□□ -1.38
LIMA1-214ENST00000552783 DCAF11Q8TEB1 546 aa6.44□□□□□ -1.38
LIMA1-214ENST00000552783 USP35Q9P2H5 1018 aa6.44□□□□□ -1.38
LIMA1-214ENST00000552783 MBD5Q9P267 1494 aa6.44□□□□□ -1.38
LIMA1-214ENST00000552783 DAPK1P53355 1430 aa6.44□□□□□ -1.38
LIMA1-214ENST00000552783 EIF5BO60841 1220 aaKnown RBP6.44□□□□□ -1.38
LIMA1-214ENST00000552783 CUL7Q14999 1698 aa6.44□□□□□ -1.38
LIMA1-214ENST00000552783 DNMBPQ6XZF7 1577 aa6.43□□□□□ -1.38
LIMA1-214ENST00000552783 EPRSP07814 1512 aaKnown RBP6.43□□□□□ -1.38
LIMA1-214ENST00000552783 KDM5CP41229 1560 aa6.43□□□□□ -1.38
LIMA1-214ENST00000552783 PKD2Q13563 968 aa6.43□□□□□ -1.38
LIMA1-214ENST00000552783 FRAT2O75474 233 aaPredicted RBP6.43□□□□□ -1.38
LIMA1-214ENST00000552783 RGL3Q3MIN7 710 aa6.43□□□□□ -1.38
LIMA1-214ENST00000552783 CARD11Q9BXL7 1154 aa6.42□□□□□ -1.38
LIMA1-214ENST00000552783 PPM1GO15355 546 aaPredicted RBP6.42□□□□□ -1.38
LIMA1-214ENST00000552783 MS4A1P11836 297 aa6.42□□□□□ -1.38
LIMA1-214ENST00000552783 MYBBP1AQ9BQG0 1328 aaKnown RBP6.42□□□□□ -1.38
LIMA1-214ENST00000552783 KIF15Q9NS87 1388 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms