RNA–Protein interactions for RNA: ENST00000552422.5

CNOT2-238, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 3

Gene CNOT2, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-238	ENST00000552422	DPY19L2	Q6NUT2	758 aa		12.09	□□□□□ -0.47
CNOT2-238	ENST00000552422	NES	P48681	1621 aa		12.08	□□□□□ -0.48
CNOT2-238	ENST00000552422	SLAIN1	Q8ND83	568 aa		12.08	□□□□□ -0.48
CNOT2-238	ENST00000552422		G3V3G9	751 aa		12.07	□□□□□ -0.48
CNOT2-238	ENST00000552422	C3orf67	Q6ZVT6	689 aa		12.07	□□□□□ -0.48
CNOT2-238	ENST00000552422	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.07	□□□□□ -0.48
CNOT2-238	ENST00000552422	KIF21A	Q7Z4S6	1674 aa		12.06	□□□□□ -0.48
CNOT2-238	ENST00000552422	PHF8	Q9UPP1	1060 aa		12.05	□□□□□ -0.48
CNOT2-238	ENST00000552422	BOLA1	Q9Y3E2	137 aa		12.04	□□□□□ -0.48
CNOT2-238	ENST00000552422	CCDC88B	A6NC98	1476 aa		12.02	□□□□□ -0.49
CNOT2-238	ENST00000552422	CADPS	Q9ULU8	1353 aa		12.01	□□□□□ -0.49
CNOT2-238	ENST00000552422	ERCC6	Q03468	1493 aa		12.01	□□□□□ -0.49
CNOT2-238	ENST00000552422	NLRP6	P59044	892 aa		12	□□□□□ -0.49
CNOT2-238	ENST00000552422	CFTR	P13569	1480 aa		11.99	□□□□□ -0.49
CNOT2-238	ENST00000552422	THOC2	Q8NI27	1593 aa	Known RBP	11.98	□□□□□ -0.49
CNOT2-238	ENST00000552422	MS4A4A	Q96JQ5	239 aa		11.98	□□□□□ -0.49
CNOT2-238	ENST00000552422	PDS5B	Q9NTI5	1447 aa		11.96	□□□□□ -0.49
CNOT2-238	ENST00000552422	CHGA	P10645	457 aa	Known RBP	11.96	□□□□□ -0.49
CNOT2-238	ENST00000552422	HS6ST3	Q8IZP7	471 aa		11.96	□□□□□ -0.49
CNOT2-238	ENST00000552422	FAM163A	Q96GL9	167 aa	Predicted RBP	11.96	□□□□□ -0.49
CNOT2-238	ENST00000552422	MFRP	Q9BY79	579 aa		11.96	□□□□□ -0.49
CNOT2-238	ENST00000552422	FBXO22	Q8NEZ5	403 aa		11.95	□□□□□ -0.5
CNOT2-238	ENST00000552422	SUPT5H	O00267	1087 aa	Known RBP	11.92	□□□□□ -0.5
CNOT2-238	ENST00000552422	MICALL2	Q8IY33	904 aa		11.92	□□□□□ -0.5
CNOT2-238	ENST00000552422	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.92	□□□□□ -0.5
CNOT2-238	ENST00000552422	FANCD2	Q9BXW9	1451 aa		11.9	□□□□□ -0.5
CNOT2-238	ENST00000552422	CEP164	Q9UPV0	1460 aa		11.9	□□□□□ -0.5
CNOT2-238	ENST00000552422	CUX2	O14529	1486 aa		11.89	□□□□□ -0.51
CNOT2-238	ENST00000552422	SNPH	O15079	494 aa		11.87	□□□□□ -0.51
CNOT2-238	ENST00000552422	MRC2	Q9UBG0	1479 aa		11.87	□□□□□ -0.51
CNOT2-238	ENST00000552422	WDR62	O43379	1518 aa		11.86	□□□□□ -0.51
CNOT2-238	ENST00000552422	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.85	□□□□□ -0.51
CNOT2-238	ENST00000552422	LCE2D	Q5TA82	110 aa	Predicted RBP	11.85	□□□□□ -0.51
CNOT2-238	ENST00000552422	POTEM	A6NI47	508 aa		11.84	□□□□□ -0.51
CNOT2-238	ENST00000552422	POTEG	Q6S5H5	508 aa		11.82	□□□□□ -0.52
CNOT2-238	ENST00000552422	ST18	O60284	1047 aa		11.8	□□□□□ -0.52
CNOT2-238	ENST00000552422	URB2	Q14146	1524 aa	Known RBP	11.8	□□□□□ -0.52
CNOT2-238	ENST00000552422	DNAJC5	Q9H3Z4	198 aa		11.79	□□□□□ -0.52
CNOT2-238	ENST00000552422	PPP1R37	O75864	691 aa		11.78	□□□□□ -0.52
CNOT2-238	ENST00000552422	TMEM92	Q6UXU6	159 aa		11.78	□□□□□ -0.52
CNOT2-238	ENST00000552422	RTN4	Q9NQC3	1192 aa	Known RBP	11.78	□□□□□ -0.52
CNOT2-238	ENST00000552422	NKX1-1	Q15270	411 aa	Predicted RBP	11.77	□□□□□ -0.53
CNOT2-238	ENST00000552422	DNMBP	Q6XZF7	1577 aa		11.76	□□□□□ -0.53
CNOT2-238	ENST00000552422	RYDEN	Q9NUL5	291 aa	Known RBP	11.75	□□□□□ -0.53
CNOT2-238	ENST00000552422	TOPBP1	Q92547	1522 aa		11.74	□□□□□ -0.53
CNOT2-238	ENST00000552422	ABCC8	Q09428	1581 aa		11.74	□□□□□ -0.53
CNOT2-238	ENST00000552422	DOK7	Q18PE1	504 aa		11.71	□□□□□ -0.53
CNOT2-238	ENST00000552422	HOXB3	P14651	431 aa	Predicted RBP	11.7	□□□□□ -0.54
CNOT2-238	ENST00000552422	ZNF710	Q8N1W2	664 aa		11.7	□□□□□ -0.54
CNOT2-238	ENST00000552422	MARVELD3	Q96A59	401 aa		11.68	□□□□□ -0.54
CNOT2-238	ENST00000552422	CUX1	P39880	1505 aa		11.68	□□□□□ -0.54
CNOT2-238	ENST00000552422	C2orf72	A6NCS6	295 aa		11.67	□□□□□ -0.54
CNOT2-238	ENST00000552422	RIMBP2	O15034	1052 aa		11.67	□□□□□ -0.54
CNOT2-238	ENST00000552422	TMC2	Q8TDI7	906 aa		11.67	□□□□□ -0.54
CNOT2-238	ENST00000552422	TARBP1	Q13395	1621 aa	Known RBP	11.66	□□□□□ -0.54
CNOT2-238	ENST00000552422	BIVM-ERCC5	R4GMW8	1640 aa		11.66	□□□□□ -0.54
CNOT2-238	ENST00000552422	POLA1	P09884	1462 aa	Predicted RBP	11.64	□□□□□ -0.55
CNOT2-238	ENST00000552422	KIF3C	O14782	793 aa		11.64	□□□□□ -0.55
CNOT2-238	ENST00000552422	GTPBP6	O43824	516 aa	Predicted RBP	11.64	□□□□□ -0.55
CNOT2-238	ENST00000552422	EMP3	P54852	163 aa		11.64	□□□□□ -0.55
CNOT2-238	ENST00000552422	WDR97	A6NE52	1622 aa		11.64	□□□□□ -0.55
CNOT2-238	ENST00000552422	IFT140	Q96RY7	1462 aa		11.63	□□□□□ -0.55
CNOT2-238	ENST00000552422	TOP2B	Q02880	1626 aa		11.63	□□□□□ -0.55
CNOT2-238	ENST00000552422	FGD5	Q6ZNL6	1462 aa		11.62	□□□□□ -0.55
CNOT2-238	ENST00000552422	SYNJ1	O43426	1573 aa		11.62	□□□□□ -0.55
CNOT2-238	ENST00000552422	PCDH10	Q9P2E7	1040 aa		11.61	□□□□□ -0.55
CNOT2-238	ENST00000552422	EIF4G3	O43432	1585 aa	Known RBP	11.61	□□□□□ -0.55
CNOT2-238	ENST00000552422	HOXB1	P14653	301 aa	Predicted RBP	11.59	□□□□□ -0.55
CNOT2-238	ENST00000552422	WRN	Q14191	1432 aa	Predicted RBP eCLIP	11.59	□□□□□ -0.55
CNOT2-238	ENST00000552422	ZSWIM6	Q9HCJ5	1215 aa		11.58	□□□□□ -0.56
CNOT2-238	ENST00000552422	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.58	□□□□□ -0.56
CNOT2-238	ENST00000552422	CDAN1	Q8IWY9	1227 aa		11.57	□□□□□ -0.56
CNOT2-238	ENST00000552422	BBX	Q8WY36	941 aa	Predicted RBP	11.57	□□□□□ -0.56
CNOT2-238	ENST00000552422	FAM205C	A6NFA0	338 aa		11.56	□□□□□ -0.56
CNOT2-238	ENST00000552422	RAD54L2	Q9Y4B4	1467 aa		11.56	□□□□□ -0.56
CNOT2-238	ENST00000552422	SOGA1	O94964	1423 aa		11.54	□□□□□ -0.56
CNOT2-238	ENST00000552422	GPHN	Q9NQX3	736 aa	Predicted RBP	11.54	□□□□□ -0.56
CNOT2-238	ENST00000552422	PBRM1	Q86U86	1689 aa		11.54	□□□□□ -0.56
CNOT2-238	ENST00000552422	HS3ST6	Q96QI5	342 aa		11.53	□□□□□ -0.56
CNOT2-238	ENST00000552422	ABCA5	Q8WWZ7	1642 aa		11.53	□□□□□ -0.56
CNOT2-238	ENST00000552422	ABCA10	Q8WWZ4	1543 aa		11.52	□□□□□ -0.57
CNOT2-238	ENST00000552422	ARSI	Q5FYB1	569 aa		11.52	□□□□□ -0.57
CNOT2-238	ENST00000552422	GPR153	Q6NV75	609 aa		11.52	□□□□□ -0.57
CNOT2-238	ENST00000552422	FOXK1	P85037	733 aa		11.51	□□□□□ -0.57
CNOT2-238	ENST00000552422	ERBB3	P21860	1342 aa		11.51	□□□□□ -0.57
CNOT2-238	ENST00000552422	PLPP6	Q8IY26	295 aa		11.5	□□□□□ -0.57
CNOT2-238	ENST00000552422	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.5	□□□□□ -0.57
CNOT2-238	ENST00000552422	CHD1	O14646	1710 aa		11.49	□□□□□ -0.57
CNOT2-238	ENST00000552422	DSG2	Q14126	1118 aa		11.49	□□□□□ -0.57
CNOT2-238	ENST00000552422	PLSCR2	Q9NRY7	297 aa		11.49	□□□□□ -0.57
CNOT2-238	ENST00000552422	AQR	O60306	1485 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
CNOT2-238	ENST00000552422	POTEB3	A0JP26	581 aa		11.48	□□□□□ -0.57
CNOT2-238	ENST00000552422	SLC34A2	O95436	690 aa		11.48	□□□□□ -0.57
CNOT2-238	ENST00000552422	POTEB	Q6S5H4	581 aa		11.48	□□□□□ -0.57
CNOT2-238	ENST00000552422	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.48	□□□□□ -0.57	1e-7	■■□□□ 14.5
CNOT2-238	ENST00000552422	CRISPLD2	Q9H0B8	497 aa		11.47	□□□□□ -0.57
CNOT2-238	ENST00000552422	PDE4A	P27815	886 aa		11.46	□□□□□ -0.57
CNOT2-238	ENST00000552422	TDRD9	Q8NDG6	1382 aa	Known RBP	11.45	□□□□□ -0.58
CNOT2-238	ENST00000552422	PCDHGA4	Q9Y5G9	962 aa		11.45	□□□□□ -0.58
CNOT2-238	ENST00000552422	GAPVD1	Q14C86	1478 aa		11.44	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms