RNA–Protein interactions for RNA: ENST00000548420.1

PTCH1-217, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-217ENST00000548420 HECW1Q76N89 1606 aa24.41■■□□□ 1.5
PTCH1-217ENST00000548420 MAGI2Q86UL8 1455 aa24.38■■□□□ 1.49
PTCH1-217ENST00000548420 P3H3Q8IVL6 736 aa24.37■■□□□ 1.49
PTCH1-217ENST00000548420 NCOA1Q15788 1441 aa24.34■■□□□ 1.49
PTCH1-217ENST00000548420 HSPA1LP34931 641 aa24.33■■□□□ 1.49
PTCH1-217ENST00000548420 ZNF335Q9H4Z2 1342 aaPredicted RBP24.33■■□□□ 1.48
PTCH1-217ENST00000548420 ATP10AO60312 1499 aa24.32■■□□□ 1.48
PTCH1-217ENST00000548420 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.3■■□□□ 1.48
PTCH1-217ENST00000548420 HNRNPUL2Q1KMD3 747 aaKnown RBP24.3■■□□□ 1.48
PTCH1-217ENST00000548420 CFAP74Q9C0B2 1584 aa24.29■■□□□ 1.48
PTCH1-217ENST00000548420 C9orf84Q5VXU9 1444 aa24.27■■□□□ 1.48
PTCH1-217ENST00000548420 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.26■■□□□ 1.47
PTCH1-217ENST00000548420 RAPGEF6Q8TEU7 1601 aa24.25■■□□□ 1.47
PTCH1-217ENST00000548420 C3P01024 1663 aa24.25■■□□□ 1.47
PTCH1-217ENST00000548420 SCAPERQ9BY12 1400 aa24.23■■□□□ 1.47
PTCH1-217ENST00000548420 NUP153P49790 1475 aaKnown RBP24.23■■□□□ 1.47
PTCH1-217ENST00000548420 NCKAP5LQ9HCH0 1330 aa24.19■■□□□ 1.46
PTCH1-217ENST00000548420 TRAPPC8Q9Y2L5 1435 aa24.18■■□□□ 1.46
PTCH1-217ENST00000548420 CAMSAP1Q5T5Y3 1602 aa24.18■■□□□ 1.46
PTCH1-217ENST00000548420 PHF23Q9BUL5 403 aaPredicted RBP24.17■■□□□ 1.46
PTCH1-217ENST00000548420 FAM9AQ8IZU1 332 aaPredicted RBP24.16■■□□□ 1.46
PTCH1-217ENST00000548420 PIP4K2BP78356 416 aa24.15■■□□□ 1.46
PTCH1-217ENST00000548420 PLEKHD1A6NEE1 506 aa24.14■■□□□ 1.45
PTCH1-217ENST00000548420 SCAF1Q9H7N4 1312 aaKnown RBP24.13■■□□□ 1.45
PTCH1-217ENST00000548420 SAMD9Q5K651 1589 aa24.09■■□□□ 1.45
PTCH1-217ENST00000548420 PRXQ9BXM0 1461 aa24.07■■□□□ 1.44
PTCH1-217ENST00000548420 RGS17Q9UGC6 210 aaPredicted RBP24.07■■□□□ 1.44
PTCH1-217ENST00000548420 PLCH2O75038 1416 aa24.06■■□□□ 1.44
PTCH1-217ENST00000548420 DIP2CQ9Y2E4 1556 aa24.03■■□□□ 1.44
PTCH1-217ENST00000548420 AFAP1Q8N556 730 aa24.01■■□□□ 1.43
PTCH1-217ENST00000548420 TOM1O60784 492 aa23.99■■□□□ 1.43
PTCH1-217ENST00000548420 REREQ9P2R6 1566 aa23.99■■□□□ 1.43
PTCH1-217ENST00000548420 ALKQ9UM73 1620 aa23.99■■□□□ 1.43
PTCH1-217ENST00000548420 TCOF1Q13428 1488 aaKnown RBP23.98■■□□□ 1.43
PTCH1-217ENST00000548420 KDM5CP41229 1560 aa23.98■■□□□ 1.43
PTCH1-217ENST00000548420 AGLP35573 1532 aa23.96■■□□□ 1.43
PTCH1-217ENST00000548420 PKD2Q13563 968 aa23.96■■□□□ 1.43
PTCH1-217ENST00000548420 ABCA6Q8N139 1617 aa23.95■■□□□ 1.43
PTCH1-217ENST00000548420 PLA2R1Q13018 1463 aa23.94■■□□□ 1.42
PTCH1-217ENST00000548420 ESF1Q9H501 851 aaKnown RBP23.94■■□□□ 1.42
PTCH1-217ENST00000548420 ZNF518AQ6AHZ1 1483 aa23.94■■□□□ 1.42
PTCH1-217ENST00000548420 NPATQ14207 1427 aa23.93■■□□□ 1.42
PTCH1-217ENST00000548420 EFCAB2Q5VUJ9 269 aa23.92■■□□□ 1.42
PTCH1-217ENST00000548420 PPP6R1Q9UPN7 881 aa23.92■■□□□ 1.42
PTCH1-217ENST00000548420 CNTLNQ9NXG0 1405 aa23.89■■□□□ 1.41
PTCH1-217ENST00000548420 SENP3Q9H4L4 574 aaPredicted RBP23.88■■□□□ 1.41
PTCH1-217ENST00000548420 MYT1LQ9UL68 1186 aa23.88■■□□□ 1.41
PTCH1-217ENST00000548420 ZNF142P52746 1687 aaPredicted RBP23.87■■□□□ 1.41
PTCH1-217ENST00000548420 CDK13Q14004 1512 aaKnown RBP23.87■■□□□ 1.41
PTCH1-217ENST00000548420 ZMYM3Q14202 1370 aa23.87■■□□□ 1.41
PTCH1-217ENST00000548420 MYO3AQ8NEV4 1616 aa23.84■■□□□ 1.41
PTCH1-217ENST00000548420 SUPT6HQ7KZ85 1726 aaKnown RBP23.84■■□□□ 1.41
PTCH1-217ENST00000548420 MYO5CQ9NQX4 1742 aa23.84■■□□□ 1.41
PTCH1-217ENST00000548420 MLH3Q9UHC1 1453 aa23.84■■□□□ 1.41
PTCH1-217ENST00000548420 POTEAQ6S8J7 498 aa23.84■■□□□ 1.41
PTCH1-217ENST00000548420 CPS1P31327 1500 aa23.84■■□□□ 1.41
PTCH1-217ENST00000548420 MROH2AA6NES4 1674 aa23.83■■□□□ 1.41
PTCH1-217ENST00000548420 CEP170BQ9Y4F5 1589 aaPredicted RBP23.82■■□□□ 1.4
PTCH1-217ENST00000548420 SHANK2Q9UPX8 1470 aa23.81■■□□□ 1.4
PTCH1-217ENST00000548420 RANGAP1P46060 587 aaPredicted RBP23.8■■□□□ 1.4
PTCH1-217ENST00000548420 PTPRKQ15262 1439 aa23.78■■□□□ 1.4
PTCH1-217ENST00000548420 NEURL4Q96JN8 1562 aa23.74■■□□□ 1.39
PTCH1-217ENST00000548420 KIF14Q15058 1648 aa23.74■■□□□ 1.39
PTCH1-217ENST00000548420 KIDINS220Q9ULH0 1771 aa23.73■■□□□ 1.39
PTCH1-217ENST00000548420 ARHGAP5Q13017 1502 aa23.73■■□□□ 1.39
PTCH1-217ENST00000548420 VWDEQ8N2E2 1590 aa23.72■■□□□ 1.39
PTCH1-217ENST00000548420 SETD1AO15047 1707 aaKnown RBP23.72■■□□□ 1.39
PTCH1-217ENST00000548420 CLTCQ00610 1675 aaKnown RBP23.7■■□□□ 1.39
PTCH1-217ENST00000548420 DNMT1P26358 1616 aaKnown RBP23.69■■□□□ 1.38
PTCH1-217ENST00000548420 POLR1AO95602 1720 aaPredicted RBP23.66■■□□□ 1.38
PTCH1-217ENST00000548420 CDC42BPBQ9Y5S2 1711 aa23.65■■□□□ 1.38
PTCH1-217ENST00000548420 A2ML1A8K2U0 1454 aa23.64■■□□□ 1.38
PTCH1-217ENST00000548420 ABCC1P33527 1531 aa23.62■■□□□ 1.37
PTCH1-217ENST00000548420 STRCP1A6NGW2 1772 aa23.61■■□□□ 1.37
PTCH1-217ENST00000548420 ITSN2Q9NZM3 1697 aa23.6■■□□□ 1.37
PTCH1-217ENST00000548420 LRRC7Q96NW7 1537 aa23.58■■□□□ 1.36
PTCH1-217ENST00000548420 UPF1Q92900 1129 aaKnown RBP eCLIP23.55■■□□□ 1.36
PTCH1-217ENST00000548420 SRCAPQ6ZRS2 3230 aa23.55■■□□□ 1.36
PTCH1-217ENST00000548420 TROQ12816 1431 aaPredicted RBP23.53■■□□□ 1.36
PTCH1-217ENST00000548420 RNF17Q9BXT8 1623 aaKnown RBP23.53■■□□□ 1.36
PTCH1-217ENST00000548420 SAMD9LQ8IVG5 1584 aa23.52■■□□□ 1.36
PTCH1-217ENST00000548420 CSRNP3Q8WYN3 585 aa23.51■■□□□ 1.35
PTCH1-217ENST00000548420 GGT6Q6P531 493 aa23.5■■□□□ 1.35
PTCH1-217ENST00000548420 ATP1B4Q9UN42 357 aaPredicted RBP23.5■■□□□ 1.35
PTCH1-217ENST00000548420 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.5■■□□□ 1.35
PTCH1-217ENST00000548420 ANKLE2Q86XL3 938 aa23.49■■□□□ 1.35
PTCH1-217ENST00000548420 NPHP4O75161 1426 aaPredicted RBP23.49■■□□□ 1.35
PTCH1-217ENST00000548420 PLXNC1O60486 1568 aa23.48■■□□□ 1.35
PTCH1-217ENST00000548420 PREX2Q70Z35 1606 aa23.48■■□□□ 1.35
PTCH1-217ENST00000548420 MED14O60244 1454 aa23.48■■□□□ 1.35
PTCH1-217ENST00000548420 FBXO31Q5XUX0 539 aaPredicted RBP23.47■■□□□ 1.35
PTCH1-217ENST00000548420 CDK11AQ9UQ88 783 aaPredicted RBP23.47■■□□□ 1.35
PTCH1-217ENST00000548420 TNRQ92752 1358 aa23.41■■□□□ 1.34
PTCH1-217ENST00000548420 DEPDC5O75140 1603 aa23.41■■□□□ 1.34
PTCH1-217ENST00000548420 SPAG9O60271 1321 aaKnown RBP23.41■■□□□ 1.34
PTCH1-217ENST00000548420 SYNMO15061 1565 aa23.41■■□□□ 1.34
PTCH1-217ENST00000548420 A2MP01023 1474 aa23.41■■□□□ 1.34
PTCH1-217ENST00000548420 LRRIQ1Q96JM4 1722 aa23.4■■□□□ 1.34
PTCH1-217ENST00000548420 IQGAP1P46940 1657 aa23.4■■□□□ 1.34
PTCH1-217ENST00000548420 CLIP1P30622 1438 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms