RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 MED1Q15648 1581 aaPredicted RBP8.97□□□□□ -0.97
CLSTN3-215ENST00000544584 ARID4BQ4LE39 1312 aaPredicted RBP8.97□□□□□ -0.97
CLSTN3-215ENST00000544584 RICTORQ6R327 1708 aa8.97□□□□□ -0.97
CLSTN3-215ENST00000544584 PTPRTO14522 1441 aa8.97□□□□□ -0.97
CLSTN3-215ENST00000544584 FANCAO15360 1455 aa8.96□□□□□ -0.98
CLSTN3-215ENST00000544584 RAPGEF3O95398 923 aa8.94□□□□□ -0.98
CLSTN3-215ENST00000544584 CLIP1P30622 1438 aa8.94□□□□□ -0.98
CLSTN3-215ENST00000544584 POGZQ7Z3K3 1410 aa8.94□□□□□ -0.98
CLSTN3-215ENST00000544584 NUP153P49790 1475 aaKnown RBP8.94□□□□□ -0.98
CLSTN3-215ENST00000544584 HECW1Q76N89 1606 aa8.92□□□□□ -0.98
CLSTN3-215ENST00000544584 ZMYM4Q5VZL5 1548 aa8.92□□□□□ -0.98
CLSTN3-215ENST00000544584 ARHGAP35Q9NRY4 1499 aa8.91□□□□□ -0.98
CLSTN3-215ENST00000544584 ARHGEF12Q9NZN5 1544 aa8.9□□□□□ -0.98
CLSTN3-215ENST00000544584 CCDC18Q5T9S5 1454 aa8.9□□□□□ -0.98
CLSTN3-215ENST00000544584 AKNAQ7Z591 1439 aa8.89□□□□□ -0.99
CLSTN3-215ENST00000544584 EFCAB2Q5VUJ9 269 aa8.89□□□□□ -0.99
CLSTN3-215ENST00000544584 UHRF1BP1Q6BDS2 1440 aa8.88□□□□□ -0.99
CLSTN3-215ENST00000544584 CASKIN1Q8WXD9 1431 aa8.88□□□□□ -0.99
CLSTN3-215ENST00000544584 PLPPR3Q6T4P5 718 aa8.88□□□□□ -0.99
CLSTN3-215ENST00000544584 ZFYVE16Q7Z3T8 1539 aa8.87□□□□□ -0.99
CLSTN3-215ENST00000544584 DENND4BO75064 1496 aaPredicted RBP8.87□□□□□ -0.99
CLSTN3-215ENST00000544584 FYCO1Q9BQS8 1478 aa8.87□□□□□ -0.99
CLSTN3-215ENST00000544584 CFAP74Q9C0B2 1584 aa8.86□□□□□ -0.99
CLSTN3-215ENST00000544584 APLP2Q06481 763 aa8.86□□□□□ -0.99
CLSTN3-215ENST00000544584 TROQ12816 1431 aaPredicted RBP8.86□□□□□ -0.99
CLSTN3-215ENST00000544584 MAGI2Q86UL8 1455 aa8.85□□□□□ -0.99
CLSTN3-215ENST00000544584 PLCH2O75038 1416 aa8.84□□□□□ -0.99
CLSTN3-215ENST00000544584 NCOA1Q15788 1441 aa8.84□□□□□ -0.99
CLSTN3-215ENST00000544584 MYT1LQ9UL68 1186 aa8.84□□□□□ -0.99
CLSTN3-215ENST00000544584 MTUS2Q5JR59 1369 aa8.84□□□□□ -0.99
CLSTN3-215ENST00000544584 KIF14Q15058 1648 aa8.83□□□□□ -1
CLSTN3-215ENST00000544584 CEP162Q5TB80 1403 aa8.83□□□□□ -1
CLSTN3-215ENST00000544584 UBAP1LF5GYI3 381 aa8.83□□□□□ -1
CLSTN3-215ENST00000544584 CDK13Q14004 1512 aaKnown RBP8.83□□□□□ -1
CLSTN3-215ENST00000544584 C3P01024 1663 aa8.82□□□□□ -1
CLSTN3-215ENST00000544584 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.82□□□□□ -1
CLSTN3-215ENST00000544584 HSPA1LP34931 641 aa8.8□□□□□ -1
CLSTN3-215ENST00000544584 CEBPAP49715 358 aaPredicted RBP8.8□□□□□ -1
CLSTN3-215ENST00000544584 CCNB3Q8WWL7 1395 aa8.8□□□□□ -1
CLSTN3-215ENST00000544584 ARHGAP5Q13017 1502 aa8.8□□□□□ -1
CLSTN3-215ENST00000544584 SCAPERQ9BY12 1400 aa8.8□□□□□ -1
CLSTN3-215ENST00000544584 MLECQ14165 292 aa8.79□□□□□ -1
CLSTN3-215ENST00000544584 CFDP1Q9UEE9 299 aaPredicted RBP8.79□□□□□ -1
CLSTN3-215ENST00000544584 C9orf84Q5VXU9 1444 aa8.79□□□□□ -1
CLSTN3-215ENST00000544584 ZNF518AQ6AHZ1 1483 aa8.78□□□□□ -1
CLSTN3-215ENST00000544584 LOC105371045A0A1W2PR82 267 aa8.78□□□□□ -1
CLSTN3-215ENST00000544584 PHF23Q9BUL5 403 aaPredicted RBP8.78□□□□□ -1
CLSTN3-215ENST00000544584 ATP10AO60312 1499 aa8.77□□□□□ -1
CLSTN3-215ENST00000544584 RSPH4AQ5TD94 716 aa8.77□□□□□ -1.01
CLSTN3-215ENST00000544584 ESF1Q9H501 851 aaKnown RBP8.77□□□□□ -1.01
CLSTN3-215ENST00000544584 ZNF777Q9ULD5 760 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-215ENST00000544584 ZNF335Q9H4Z2 1342 aaPredicted RBP8.77□□□□□ -1.01
CLSTN3-215ENST00000544584 MYO5CQ9NQX4 1742 aa8.77□□□□□ -1.01
CLSTN3-215ENST00000544584 PLEKHH2Q8IVE3 1493 aa8.77□□□□□ -1.01
CLSTN3-215ENST00000544584 CAMSAP1Q5T5Y3 1602 aa8.76□□□□□ -1.01
CLSTN3-215ENST00000544584 VPS8Q8N3P4 1428 aa8.75□□□□□ -1.01
CLSTN3-215ENST00000544584 TRAPPC8Q9Y2L5 1435 aa8.75□□□□□ -1.01
CLSTN3-215ENST00000544584 REREQ9P2R6 1566 aa8.74□□□□□ -1.01
CLSTN3-215ENST00000544584 ZNF142P52746 1687 aaPredicted RBP8.74□□□□□ -1.01
CLSTN3-215ENST00000544584 PLA2R1Q13018 1463 aa8.73□□□□□ -1.01
CLSTN3-215ENST00000544584 EHBP1L1Q8N3D4 1523 aa8.73□□□□□ -1.01
CLSTN3-215ENST00000544584 ALKQ9UM73 1620 aa8.72□□□□□ -1.01
CLSTN3-215ENST00000544584 KIAA1107Q9UPP5 1409 aa8.72□□□□□ -1.01
CLSTN3-215ENST00000544584 TCOF1Q13428 1488 aaKnown RBP8.72□□□□□ -1.01
CLSTN3-215ENST00000544584 TSPY4P0CV99 314 aa8.72□□□□□ -1.01
CLSTN3-215ENST00000544584 TSPY10P0CW01 314 aa8.72□□□□□ -1.01
CLSTN3-215ENST00000544584 AFAP1Q8N556 730 aa8.72□□□□□ -1.01
CLSTN3-215ENST00000544584 SPAG9O60271 1321 aaKnown RBP8.72□□□□□ -1.01
CLSTN3-215ENST00000544584 SUPT6HQ7KZ85 1726 aaKnown RBP8.71□□□□□ -1.01
CLSTN3-215ENST00000544584 AGLP35573 1532 aa8.71□□□□□ -1.01
CLSTN3-215ENST00000544584 RGS17Q9UGC6 210 aaPredicted RBP8.71□□□□□ -1.02
CLSTN3-215ENST00000544584 MROH2AA6NES4 1674 aa8.71□□□□□ -1.02
CLSTN3-215ENST00000544584 CPS1P31327 1500 aa8.7□□□□□ -1.02
CLSTN3-215ENST00000544584 MAP3K1Q13233 1512 aa8.7□□□□□ -1.02
CLSTN3-215ENST00000544584 NPATQ14207 1427 aa8.7□□□□□ -1.02
CLSTN3-215ENST00000544584 MLH3Q9UHC1 1453 aa8.7□□□□□ -1.02
CLSTN3-215ENST00000544584 GPATCH8Q9UKJ3 1502 aaKnown RBP8.7□□□□□ -1.02
CLSTN3-215ENST00000544584 KDM5CP41229 1560 aa8.69□□□□□ -1.02
CLSTN3-215ENST00000544584 PREX2Q70Z35 1606 aa8.69□□□□□ -1.02
CLSTN3-215ENST00000544584 TOM1O60784 492 aa8.69□□□□□ -1.02
CLSTN3-215ENST00000544584 PPP6R1Q9UPN7 881 aa8.69□□□□□ -1.02
CLSTN3-215ENST00000544584 DIP2CQ9Y2E4 1556 aa8.69□□□□□ -1.02
CLSTN3-215ENST00000544584 HNRNPMP52272 730 aaKnown RBP eCLIP8.68□□□□□ -1.02
CLSTN3-215ENST00000544584 PIP4K2BP78356 416 aa8.68□□□□□ -1.02
CLSTN3-215ENST00000544584 PKD2Q13563 968 aa8.68□□□□□ -1.02
CLSTN3-215ENST00000544584 SETD1AO15047 1707 aaKnown RBP8.68□□□□□ -1.02
CLSTN3-215ENST00000544584 ABCC1P33527 1531 aa8.67□□□□□ -1.02
CLSTN3-215ENST00000544584 PTPRKQ15262 1439 aa8.67□□□□□ -1.02
CLSTN3-215ENST00000544584 MYO3AQ8NEV4 1616 aa8.67□□□□□ -1.02
CLSTN3-215ENST00000544584 SCAF1Q9H7N4 1312 aaKnown RBP8.67□□□□□ -1.02
CLSTN3-215ENST00000544584 NCKAP5LQ9HCH0 1330 aa8.67□□□□□ -1.02
CLSTN3-215ENST00000544584 CNTLNQ9NXG0 1405 aa8.67□□□□□ -1.02
CLSTN3-215ENST00000544584 ITSN2Q9NZM3 1697 aa8.67□□□□□ -1.02
CLSTN3-215ENST00000544584 LRRIQ1Q96JM4 1722 aa8.66□□□□□ -1.02
CLSTN3-215ENST00000544584 CDC42BPBQ9Y5S2 1711 aa8.66□□□□□ -1.02
CLSTN3-215ENST00000544584 TIAM1Q13009 1591 aa8.66□□□□□ -1.02
CLSTN3-215ENST00000544584 LRRC9Q6ZRR7 1453 aa8.66□□□□□ -1.02
CLSTN3-215ENST00000544584 POLR1AO95602 1720 aaPredicted RBP8.66□□□□□ -1.02
CLSTN3-215ENST00000544584 ABCA6Q8N139 1617 aa8.65□□□□□ -1.02
CLSTN3-215ENST00000544584 SRCAPQ6ZRS2 3230 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms