RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 EIF4G1Q04637 1599 aaKnown RBP18.51■□□□□ 0.55
LIMS1-215ENST00000544547 CCDC184Q52MB2 194 aa18.51■□□□□ 0.55
LIMS1-215ENST00000544547 RSPH6AQ9H0K4 717 aa18.5■□□□□ 0.55
LIMS1-215ENST00000544547 PLIN1O60240 522 aa18.49■□□□□ 0.55
LIMS1-215ENST00000544547 CC2D1BQ5T0F9 858 aaKnown RBP18.48■□□□□ 0.55
LIMS1-215ENST00000544547 PLPPR3Q6T4P5 718 aa18.48■□□□□ 0.55
LIMS1-215ENST00000544547 LRRC9Q6ZRR7 1453 aa18.47■□□□□ 0.55
LIMS1-215ENST00000544547 FMN1Q68DA7 1419 aa18.47■□□□□ 0.55
LIMS1-215ENST00000544547 CHMP7Q8WUX9 453 aaPredicted RBP18.47■□□□□ 0.55
LIMS1-215ENST00000544547 NFKBIBQ15653 356 aa18.46■□□□□ 0.55
LIMS1-215ENST00000544547 L1TD1Q5T7N2 865 aaKnown RBP18.45■□□□□ 0.54
LIMS1-215ENST00000544547 FRAT1Q92837 279 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-215ENST00000544547 ARID3AQ99856 593 aa18.45■□□□□ 0.54
LIMS1-215ENST00000544547 CCDC18Q5T9S5 1454 aa18.43■□□□□ 0.54
LIMS1-215ENST00000544547 ERICH3Q5RHP9 1530 aa18.43■□□□□ 0.54
LIMS1-215ENST00000544547 HSP90AA2PQ14568 343 aaPredicted RBP18.43■□□□□ 0.54
LIMS1-215ENST00000544547 WDR97A6NE52 1622 aa18.42■□□□□ 0.54
LIMS1-215ENST00000544547 FGD5Q6ZNL6 1462 aa18.41■□□□□ 0.54
LIMS1-215ENST00000544547 PKD2Q13563 968 aa18.41■□□□□ 0.54
LIMS1-215ENST00000544547 TOP2BQ02880 1626 aa18.41■□□□□ 0.54
LIMS1-215ENST00000544547 DCAF11Q8TEB1 546 aa18.41■□□□□ 0.54
LIMS1-215ENST00000544547 WASHC2AQ641Q2 1341 aa18.4■□□□□ 0.54
LIMS1-215ENST00000544547 NCLP19338 710 aaKnown RBP18.4■□□□□ 0.54
LIMS1-215ENST00000544547 RAD54L2Q9Y4B4 1467 aa18.39■□□□□ 0.53
LIMS1-215ENST00000544547 CUX1P39880 1505 aa18.39■□□□□ 0.53
LIMS1-215ENST00000544547 PLEKHD1A6NEE1 506 aa18.39■□□□□ 0.53
LIMS1-215ENST00000544547 RRP1P56182 461 aaKnown RBP18.38■□□□□ 0.53
LIMS1-215ENST00000544547 AKNAQ7Z591 1439 aa18.38■□□□□ 0.53
LIMS1-215ENST00000544547 NEUROD2Q15784 382 aa18.37■□□□□ 0.53
LIMS1-215ENST00000544547 PKNOX2Q96KN3 472 aa18.36■□□□□ 0.53
LIMS1-215ENST00000544547 FGD6Q6ZV73 1430 aa18.36■□□□□ 0.53
LIMS1-215ENST00000544547 GOLGA6L3A6NEY3 463 aa18.33■□□□□ 0.52
LIMS1-215ENST00000544547 FRAT2O75474 233 aaPredicted RBP18.33■□□□□ 0.52
LIMS1-215ENST00000544547 CRBNQ96SW2 442 aa18.32■□□□□ 0.52
LIMS1-215ENST00000544547 NCAPD3P42695 1498 aa18.32■□□□□ 0.52
LIMS1-215ENST00000544547 FANCD2Q9BXW9 1451 aa18.31■□□□□ 0.52
LIMS1-215ENST00000544547 BICRAQ9NZM4 1560 aa18.3■□□□□ 0.52
LIMS1-215ENST00000544547 ZBTB7CA1YPR0 619 aa18.29■□□□□ 0.52
LIMS1-215ENST00000544547 UACAQ9BZF9 1416 aa18.29■□□□□ 0.52
LIMS1-215ENST00000544547 ZNF644Q9H582 1327 aaPredicted RBP18.29■□□□□ 0.52
LIMS1-215ENST00000544547 MS4A1P11836 297 aa18.28■□□□□ 0.52
LIMS1-215ENST00000544547 SKAP1Q86WV1 359 aa18.28■□□□□ 0.52
LIMS1-215ENST00000544547 CFTRP13569 1480 aa18.28■□□□□ 0.52
LIMS1-215ENST00000544547 DNTTIP2Q5QJE6 756 aaKnown RBP18.27■□□□□ 0.51
LIMS1-215ENST00000544547 FAM161AQ3B820 660 aa18.26■□□□□ 0.51
LIMS1-215ENST00000544547 GOLGA6L22H0YM25 854 aa18.26■□□□□ 0.51
LIMS1-215ENST00000544547 KNSTRNQ9Y448 316 aa18.26■□□□□ 0.51
LIMS1-215ENST00000544547 TIAM1Q13009 1591 aa18.26■□□□□ 0.51
LIMS1-215ENST00000544547 SENP3Q9H4L4 574 aaPredicted RBP18.25■□□□□ 0.51
LIMS1-215ENST00000544547 UBE2Q2Q8WVN8 375 aa18.25■□□□□ 0.51
LIMS1-215ENST00000544547 BACH2Q9BYV9 841 aa18.25■□□□□ 0.51
LIMS1-215ENST00000544547 TPRNQ4KMQ1 711 aa18.24■□□□□ 0.51
LIMS1-215ENST00000544547 KIF7Q2M1P5 1343 aa18.23■□□□□ 0.51
LIMS1-215ENST00000544547 MYH16Q9H6N6 1097 aa18.23■□□□□ 0.51
LIMS1-215ENST00000544547 PTMAP06454 111 aaKnown RBP18.22■□□□□ 0.51
LIMS1-215ENST00000544547 NUP155O75694 1391 aa18.22■□□□□ 0.51
LIMS1-215ENST00000544547 CCDC7Q96M83 1385 aa18.22■□□□□ 0.51
LIMS1-215ENST00000544547 ST20-MTHFSA0A0A6YYL1 179 aa18.22■□□□□ 0.51
LIMS1-215ENST00000544547 MYOM3Q5VTT5 1437 aa18.22■□□□□ 0.51
LIMS1-215ENST00000544547 MSNP26038 577 aaKnown RBP18.21■□□□□ 0.51
LIMS1-215ENST00000544547 CASKIN1Q8WXD9 1431 aa18.21■□□□□ 0.51
LIMS1-215ENST00000544547 HSP90AB1P08238 724 aaKnown RBP18.21■□□□□ 0.51
LIMS1-215ENST00000544547 NBPF8Q3BBV2 869 aa18.2■□□□□ 0.5
LIMS1-215ENST00000544547 TNNT2P45379 298 aaPredicted RBP18.19■□□□□ 0.5
LIMS1-215ENST00000544547 CNTLNQ9NXG0 1405 aa18.19■□□□□ 0.5
LIMS1-215ENST00000544547 NCOA2Q15596 1464 aa18.19■□□□□ 0.5
LIMS1-215ENST00000544547 RALBP1Q15311 655 aa18.19■□□□□ 0.5
LIMS1-215ENST00000544547 HSCBQ8IWL3 235 aa18.18■□□□□ 0.5
LIMS1-215ENST00000544547 CDCA7LQ96GN5 454 aa18.18■□□□□ 0.5
LIMS1-215ENST00000544547 C11orf95C9JLR9 678 aaPredicted RBP18.18■□□□□ 0.5
LIMS1-215ENST00000544547 AMER1Q5JTC6 1135 aaPredicted RBP18.18■□□□□ 0.5
LIMS1-215ENST00000544547 PDE3BQ13370 1112 aa18.17■□□□□ 0.5
LIMS1-215ENST00000544547 NLRP13Q86W25 1043 aa18.17■□□□□ 0.5
LIMS1-215ENST00000544547 FTSJ3Q8IY81 847 aaKnown RBP18.17■□□□□ 0.5
LIMS1-215ENST00000544547 KTN1Q86UP2 1357 aaKnown RBP18.16■□□□□ 0.5
LIMS1-215ENST00000544547 MAPKBP1O60336 1514 aa18.16■□□□□ 0.5
LIMS1-215ENST00000544547 CENPQQ7L2Z9 268 aaPredicted RBP18.15■□□□□ 0.5
LIMS1-215ENST00000544547 FAM43AQ8N2R8 423 aa18.15■□□□□ 0.5
LIMS1-215ENST00000544547 HNRNPMP52272 730 aaKnown RBP eCLIP18.14■□□□□ 0.493e-7■■■□□ 17.5
LIMS1-215ENST00000544547 MFAP1P55081 439 aaKnown RBP18.14■□□□□ 0.49
LIMS1-215ENST00000544547 USP47Q96K76 1375 aa18.14■□□□□ 0.49
LIMS1-215ENST00000544547 UNC13AQ9UPW8 1703 aa18.13■□□□□ 0.49
LIMS1-215ENST00000544547 ROCK2O75116 1388 aaKnown RBP18.13■□□□□ 0.49
LIMS1-215ENST00000544547 FOXD4L1Q9NU39 408 aa18.13■□□□□ 0.49
LIMS1-215ENST00000544547 HFM1A2PYH4 1435 aa18.12■□□□□ 0.49
LIMS1-215ENST00000544547 FYCO1Q9BQS8 1478 aa18.11■□□□□ 0.49
LIMS1-215ENST00000544547 MYBBP1AQ9BQG0 1328 aaKnown RBP18.11■□□□□ 0.49
LIMS1-215ENST00000544547 CCDC146Q8IYE0 955 aa18.11■□□□□ 0.49
LIMS1-215ENST00000544547 CLUAP1Q96AJ1 413 aa18.11■□□□□ 0.49
LIMS1-215ENST00000544547 PEG3Q9GZU2 1588 aa18.1■□□□□ 0.49
LIMS1-215ENST00000544547 PDS5BQ9NTI5 1447 aa18.1■□□□□ 0.49
LIMS1-215ENST00000544547 NAIPQ13075 1403 aa18.09■□□□□ 0.49
LIMS1-215ENST00000544547 PLEKHG5O94827 1062 aa18.09■□□□□ 0.49
LIMS1-215ENST00000544547 PLCB2Q00722 1185 aa18.09■□□□□ 0.49
LIMS1-215ENST00000544547 GOLGA2Q08379 1002 aa18.09■□□□□ 0.49
LIMS1-215ENST00000544547 GAPVD1Q14C86 1478 aa18.08■□□□□ 0.49
LIMS1-215ENST00000544547 TMF1P82094 1093 aa18.08■□□□□ 0.49
LIMS1-215ENST00000544547 ANKRD30AQ9BXX3 1397 aa18.08■□□□□ 0.48
LIMS1-215ENST00000544547 NESP48681 1621 aa18.07■□□□□ 0.48
LIMS1-215ENST00000544547 POGKQ9P215 609 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms