RNA–Protein interactions for RNA: ENST00000540805.5

PROM1-220, Transcript of prominin 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PROM1, Length 3,908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-220ENST00000540805 CCDC18Q5T9S5 1454 aa7.36□□□□□ -1.23
PROM1-220ENST00000540805 NBR1Q14596 966 aa7.35□□□□□ -1.23
PROM1-220ENST00000540805 FGD6Q6ZV73 1430 aa7.35□□□□□ -1.23
PROM1-220ENST00000540805 ADCY10Q96PN6 1610 aa7.35□□□□□ -1.23
PROM1-220ENST00000540805 NEFLP07196 543 aa7.35□□□□□ -1.23
PROM1-220ENST00000540805 IL27Q8NEV9 243 aa7.35□□□□□ -1.23
PROM1-220ENST00000540805 FAM50AQ14320 339 aaKnown RBP7.35□□□□□ -1.23
PROM1-220ENST00000540805 PTPN23Q9H3S7 1636 aa7.35□□□□□ -1.23
PROM1-220ENST00000540805 ABCA8O94911 1581 aa7.34□□□□□ -1.23
PROM1-220ENST00000540805 DENND4BO75064 1496 aaPredicted RBP7.34□□□□□ -1.23
PROM1-220ENST00000540805 KDM6BO15054 1643 aa7.34□□□□□ -1.24
PROM1-220ENST00000540805 IRX6P78412 446 aaPredicted RBP7.33□□□□□ -1.24
PROM1-220ENST00000540805 RAB3GAP2Q9H2M9 1393 aa7.33□□□□□ -1.24
PROM1-220ENST00000540805 MYOM3Q5VTT5 1437 aa7.32□□□□□ -1.24
PROM1-220ENST00000540805 GCC2Q8IWJ2 1684 aa7.32□□□□□ -1.24
PROM1-220ENST00000540805 KIF14Q15058 1648 aa7.31□□□□□ -1.24
PROM1-220ENST00000540805 PLB1Q6P1J6 1458 aa7.31□□□□□ -1.24
PROM1-220ENST00000540805 TRIM52Q96A61 297 aa7.31□□□□□ -1.24
PROM1-220ENST00000540805 ERCC6L2Q5T890 1561 aa7.31□□□□□ -1.24
PROM1-220ENST00000540805 ZNF326Q5BKZ1 582 aaKnown RBP7.3□□□□□ -1.24
PROM1-220ENST00000540805 KDM5BQ9UGL1 1544 aa7.3□□□□□ -1.24
PROM1-220ENST00000540805 SETD5Q9C0A6 1442 aa7.29□□□□□ -1.24
PROM1-220ENST00000540805 CROCC2H7BZ55 1655 aa7.29□□□□□ -1.24
PROM1-220ENST00000540805 HFM1A2PYH4 1435 aa7.29□□□□□ -1.24
PROM1-220ENST00000540805 CDC42BPAQ5VT25 1732 aa7.29□□□□□ -1.24
PROM1-220ENST00000540805 NAIPQ13075 1403 aa7.29□□□□□ -1.24
PROM1-220ENST00000540805 DDX10Q13206 875 aaKnown RBP7.28□□□□□ -1.24
PROM1-220ENST00000540805 DNMT1P26358 1616 aaKnown RBP7.28□□□□□ -1.24
PROM1-220ENST00000540805 ILDR1Q86SU0 546 aaPredicted RBP7.27□□□□□ -1.25
PROM1-220ENST00000540805 ABCC10Q5T3U5 1492 aa7.27□□□□□ -1.25
PROM1-220ENST00000540805 MTUS2Q5JR59 1369 aa7.27□□□□□ -1.25
PROM1-220ENST00000540805 MIA2Q96PC5 1412 aa7.26□□□□□ -1.25
PROM1-220ENST00000540805 CCER2I3L3R5 266 aa7.26□□□□□ -1.25
PROM1-220ENST00000540805 SLC24A1O60721 1099 aa7.26□□□□□ -1.25
PROM1-220ENST00000540805 PLEKHG5O94827 1062 aa7.26□□□□□ -1.25
PROM1-220ENST00000540805 ATP10BO94823 1461 aa7.26□□□□□ -1.25
PROM1-220ENST00000540805 ZNF777Q9ULD5 760 aaPredicted RBP7.25□□□□□ -1.25
PROM1-220ENST00000540805 AKNAQ7Z591 1439 aa7.25□□□□□ -1.25
PROM1-220ENST00000540805 PRG4Q92954 1404 aaPredicted RBP7.25□□□□□ -1.25
PROM1-220ENST00000540805 PAK3O75914 559 aaPredicted RBP7.25□□□□□ -1.25
PROM1-220ENST00000540805 ANP32CO43423 234 aa7.24□□□□□ -1.25
PROM1-220ENST00000540805 CDC42BPBQ9Y5S2 1711 aa7.24□□□□□ -1.25
PROM1-220ENST00000540805 JPH4Q96JJ6 628 aa7.24□□□□□ -1.25
PROM1-220ENST00000540805 GPATCH8Q9UKJ3 1502 aaKnown RBP7.24□□□□□ -1.25
PROM1-220ENST00000540805 ITSN2Q9NZM3 1697 aa7.24□□□□□ -1.25
PROM1-220ENST00000540805 PPP1R15AO75807 674 aaPredicted RBP7.24□□□□□ -1.25
PROM1-220ENST00000540805 CHMP7Q8WUX9 453 aaPredicted RBP7.23□□□□□ -1.25
PROM1-220ENST00000540805 FANCIQ9NVI1 1328 aa7.23□□□□□ -1.25
PROM1-220ENST00000540805 TROQ12816 1431 aaPredicted RBP7.23□□□□□ -1.25
PROM1-220ENST00000540805 EIF5BO60841 1220 aaKnown RBP7.23□□□□□ -1.25
PROM1-220ENST00000540805 CYB5RLQ6IPT4 315 aa7.23□□□□□ -1.25
PROM1-220ENST00000540805 ADGBQ8N7X0 1667 aa7.23□□□□□ -1.25
PROM1-220ENST00000540805 ABCC5O15440 1437 aa7.23□□□□□ -1.25
PROM1-220ENST00000540805 DAPK1P53355 1430 aa7.22□□□□□ -1.25
PROM1-220ENST00000540805 UBE2Q2Q8WVN8 375 aa7.21□□□□□ -1.25
PROM1-220ENST00000540805 HIRIP3Q9BW71 556 aaPredicted RBP7.21□□□□□ -1.25
PROM1-220ENST00000540805 CDK11AQ9UQ88 783 aaPredicted RBP7.21□□□□□ -1.25
PROM1-220ENST00000540805 UACAQ9BZF9 1416 aa7.21□□□□□ -1.26
PROM1-220ENST00000540805 CAMSAP2Q08AD1 1489 aa7.21□□□□□ -1.26
PROM1-220ENST00000540805 TIMELESSQ9UNS1 1208 aa7.21□□□□□ -1.26
PROM1-220ENST00000540805 PREX2Q70Z35 1606 aa7.21□□□□□ -1.26
PROM1-220ENST00000540805 SIN3AQ96ST3 1273 aa7.2□□□□□ -1.26
PROM1-220ENST00000540805 TTC37Q6PGP7 1564 aa7.2□□□□□ -1.26
PROM1-220ENST00000540805 ZNF644Q9H582 1327 aaPredicted RBP7.2□□□□□ -1.26
PROM1-220ENST00000540805 SENP3Q9H4L4 574 aaPredicted RBP7.2□□□□□ -1.26
PROM1-220ENST00000540805 CARMIL2Q6F5E8 1435 aa7.2□□□□□ -1.26
PROM1-220ENST00000540805 ADGRL2O95490 1459 aa7.2□□□□□ -1.26
PROM1-220ENST00000540805 SAMD9LQ8IVG5 1584 aa7.19□□□□□ -1.26
PROM1-220ENST00000540805 ROCK1Q13464 1354 aa7.19□□□□□ -1.26
PROM1-220ENST00000540805 TRHP20396 242 aaPredicted RBP7.19□□□□□ -1.26
PROM1-220ENST00000540805 ZCCHC11Q5TAX3 1644 aaKnown RBP7.19□□□□□ -1.26
PROM1-220ENST00000540805 ABCC2Q92887 1545 aa7.19□□□□□ -1.26
PROM1-220ENST00000540805 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.18□□□□□ -1.26
PROM1-220ENST00000540805 MBD5Q9P267 1494 aa7.18□□□□□ -1.26
PROM1-220ENST00000540805 ARHGEF5Q12774 1597 aa7.17□□□□□ -1.26
PROM1-220ENST00000540805 CHGAP10645 457 aaKnown RBP7.17□□□□□ -1.26
PROM1-220ENST00000540805 UHRF1BP1LA0JNW5 1464 aa7.17□□□□□ -1.26
PROM1-220ENST00000540805 DIP2BQ9P265 1576 aa7.16□□□□□ -1.26
PROM1-220ENST00000540805 PZPP20742 1482 aa7.16□□□□□ -1.26
PROM1-220ENST00000540805 HNRNPUQ00839 825 aaKnown RBP eCLIP7.16□□□□□ -1.26
PROM1-220ENST00000540805 ESF1Q9H501 851 aaKnown RBP7.16□□□□□ -1.26
PROM1-220ENST00000540805 NCOA1Q15788 1441 aa7.16□□□□□ -1.26
PROM1-220ENST00000540805 SHANK2Q9UPX8 1470 aa7.15□□□□□ -1.26
PROM1-220ENST00000540805 ERICH6BQ5W0A0 696 aa7.15□□□□□ -1.26
PROM1-220ENST00000540805 NPM1P06748 294 aaKnown RBP eCLIP7.15□□□□□ -1.27
PROM1-220ENST00000540805 HECW2Q9P2P5 1572 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 PTPRGP23470 1445 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 TONSLQ96HA7 1378 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 KDM5DQ9BY66 1539 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 MAST1Q9Y2H9 1570 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 MYO5CQ9NQX4 1742 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 ARHGEF12Q9NZN5 1544 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 KDM4FA0A1W2PPD8 638 aa7.14□□□□□ -1.27
PROM1-220ENST00000540805 PPRC1Q5VV67 1664 aaKnown RBP7.13□□□□□ -1.27
PROM1-220ENST00000540805 PPP4R2Q9NY27 417 aa7.13□□□□□ -1.27
PROM1-220ENST00000540805 TEX14Q8IWB6 1497 aa7.12□□□□□ -1.27
PROM1-220ENST00000540805 PKNOX2Q96KN3 472 aa7.12□□□□□ -1.27
PROM1-220ENST00000540805 SENP3-EIF4A1A0A087X0R7 540 aa7.12□□□□□ -1.27
PROM1-220ENST00000540805 B4GALNT3Q6L9W6 998 aa7.11□□□□□ -1.27
PROM1-220ENST00000540805 BRPF3Q9ULD4 1205 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms