RNA–Protein interactions for RNA: ENST00000540434.1

TMEM258-205, Transcript of transmembrane protein 258, humanhuman

TSL 2

Gene TMEM258, Length 553 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM258-205ENST00000540434 ZFYVE16Q7Z3T8 1539 aa18.8■□□□□ 0.6
TMEM258-205ENST00000540434 SAMD9Q5K651 1589 aa18.8■□□□□ 0.6
TMEM258-205ENST00000540434 UBTFP17480 764 aaKnown RBP18.78■□□□□ 0.6
TMEM258-205ENST00000540434 LTBP4Q8N2S1 1624 aa18.78■□□□□ 0.6
TMEM258-205ENST00000540434 NUP153P49790 1475 aaKnown RBP18.77■□□□□ 0.59
TMEM258-205ENST00000540434 ZMYM4Q5VZL5 1548 aa18.76■□□□□ 0.59
TMEM258-205ENST00000540434 ARHGEF12Q9NZN5 1544 aa18.74■□□□□ 0.59
TMEM258-205ENST00000540434 HECW1Q76N89 1606 aa18.74■□□□□ 0.59
TMEM258-205ENST00000540434 EFCAB5A4FU69 1503 aa18.74■□□□□ 0.59
TMEM258-205ENST00000540434 PTPRTO14522 1441 aa18.72■□□□□ 0.59
TMEM258-205ENST00000540434 UHRF1BP1Q6BDS2 1440 aa18.72■□□□□ 0.59
TMEM258-205ENST00000540434 CFAP74Q9C0B2 1584 aa18.72■□□□□ 0.59
TMEM258-205ENST00000540434 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.71■□□□□ 0.591e-9■■■■■ 62
TMEM258-205ENST00000540434 MAGI2Q86UL8 1455 aa18.7■□□□□ 0.58
TMEM258-205ENST00000540434 PLEKHD1A6NEE1 506 aa18.68■□□□□ 0.58
TMEM258-205ENST00000540434 SETD1BQ9UPS6 1966 aaKnown RBP18.67■□□□□ 0.58
TMEM258-205ENST00000540434 UBAP1LF5GYI3 381 aa18.66■□□□□ 0.58
TMEM258-205ENST00000540434 ATP10AO60312 1499 aa18.65■□□□□ 0.58
TMEM258-205ENST00000540434 ARHGAP35Q9NRY4 1499 aa18.65■□□□□ 0.58
TMEM258-205ENST00000540434 LOC105371045A0A1W2PR82 267 aa18.64■□□□□ 0.57
TMEM258-205ENST00000540434 SCAPERQ9BY12 1400 aa18.64■□□□□ 0.57
TMEM258-205ENST00000540434 IQSEC2Q5JU85 1478 aa18.64■□□□□ 0.57
TMEM258-205ENST00000540434 C9orf84Q5VXU9 1444 aa18.62■□□□□ 0.57
TMEM258-205ENST00000540434 ZNF335Q9H4Z2 1342 aaPredicted RBP18.6■□□□□ 0.57
TMEM258-205ENST00000540434 MED1Q15648 1581 aaPredicted RBP18.58■□□□□ 0.56
TMEM258-205ENST00000540434 PLCH2O75038 1416 aa18.57■□□□□ 0.56
TMEM258-205ENST00000540434 NCOA1Q15788 1441 aa18.57■□□□□ 0.56
TMEM258-205ENST00000540434 C3P01024 1663 aa18.57■□□□□ 0.56
TMEM258-205ENST00000540434 NCKAP5LQ9HCH0 1330 aa18.55■□□□□ 0.56
TMEM258-205ENST00000540434 HSPA1LP34931 641 aa18.55■□□□□ 0.56
TMEM258-205ENST00000540434 SCAF1Q9H7N4 1312 aaKnown RBP18.51■□□□□ 0.55
TMEM258-205ENST00000540434 CDK13Q14004 1512 aaKnown RBP18.51■□□□□ 0.55
TMEM258-205ENST00000540434 CAMSAP1Q5T5Y3 1602 aa18.5■□□□□ 0.55
TMEM258-205ENST00000540434 AFAP1Q8N556 730 aa18.5■□□□□ 0.55
TMEM258-205ENST00000540434 MYT1LQ9UL68 1186 aa18.5■□□□□ 0.55
TMEM258-205ENST00000540434 TRAPPC8Q9Y2L5 1435 aa18.49■□□□□ 0.55
TMEM258-205ENST00000540434 MYO5CQ9NQX4 1742 aa18.49■□□□□ 0.55
TMEM258-205ENST00000540434 PIP4K2BP78356 416 aa18.49■□□□□ 0.55
TMEM258-205ENST00000540434 CLIP1P30622 1438 aa18.48■□□□□ 0.55
TMEM258-205ENST00000540434 EFCAB2Q5VUJ9 269 aa18.47■□□□□ 0.55
TMEM258-205ENST00000540434 KDM5CP41229 1560 aa18.46■□□□□ 0.55
TMEM258-205ENST00000540434 DIP2CQ9Y2E4 1556 aa18.46■□□□□ 0.55
TMEM258-205ENST00000540434 LRRIQ1Q96JM4 1722 aa18.44■□□□□ 0.54
TMEM258-205ENST00000540434 REREQ9P2R6 1566 aa18.44■□□□□ 0.54
TMEM258-205ENST00000540434 PHF23Q9BUL5 403 aaPredicted RBP18.44■□□□□ 0.54
TMEM258-205ENST00000540434 ESF1Q9H501 851 aaKnown RBP18.44■□□□□ 0.54
TMEM258-205ENST00000540434 ZNF518AQ6AHZ1 1483 aa18.44■□□□□ 0.54
TMEM258-205ENST00000540434 FMN1Q68DA7 1419 aa18.43■□□□□ 0.54
TMEM258-205ENST00000540434 ATP1B4Q9UN42 357 aaPredicted RBP18.43■□□□□ 0.54
TMEM258-205ENST00000540434 ABCA6Q8N139 1617 aa18.41■□□□□ 0.54
TMEM258-205ENST00000540434 CEP162Q5TB80 1403 aa18.41■□□□□ 0.54
TMEM258-205ENST00000540434 KIF14Q15058 1648 aa18.41■□□□□ 0.54
TMEM258-205ENST00000540434 SENP3Q9H4L4 574 aaPredicted RBP18.39■□□□□ 0.53
TMEM258-205ENST00000540434 AGLP35573 1532 aa18.39■□□□□ 0.53
TMEM258-205ENST00000540434 MLH3Q9UHC1 1453 aa18.37■□□□□ 0.53
TMEM258-205ENST00000540434 CDC42BPBQ9Y5S2 1711 aa18.37■□□□□ 0.53
TMEM258-205ENST00000540434 ARHGAP5Q13017 1502 aa18.35■□□□□ 0.53
TMEM258-205ENST00000540434 CASKIN1Q8WXD9 1431 aa18.35■□□□□ 0.53
TMEM258-205ENST00000540434 PPP6R1Q9UPN7 881 aa18.33■□□□□ 0.52
TMEM258-205ENST00000540434 KIDINS220Q9ULH0 1771 aa18.32■□□□□ 0.52
TMEM258-205ENST00000540434 ZMYM3Q14202 1370 aa18.31■□□□□ 0.52
TMEM258-205ENST00000540434 TOM1O60784 492 aa18.31■□□□□ 0.52
TMEM258-205ENST00000540434 PKD2Q13563 968 aa18.31■□□□□ 0.52
TMEM258-205ENST00000540434 TCOF1Q13428 1488 aaKnown RBP18.31■□□□□ 0.52
TMEM258-205ENST00000540434 TROQ12816 1431 aaPredicted RBP18.31■□□□□ 0.52
TMEM258-205ENST00000540434 CDK11AQ9UQ88 783 aaPredicted RBP18.3■□□□□ 0.52
TMEM258-205ENST00000540434 NPATQ14207 1427 aa18.3■□□□□ 0.52
TMEM258-205ENST00000540434 CNTLNQ9NXG0 1405 aa18.3■□□□□ 0.52
TMEM258-205ENST00000540434 MROH2AA6NES4 1674 aa18.29■□□□□ 0.52
TMEM258-205ENST00000540434 PLA2R1Q13018 1463 aa18.28■□□□□ 0.52
TMEM258-205ENST00000540434 RGS17Q9UGC6 210 aaPredicted RBP18.28■□□□□ 0.52
TMEM258-205ENST00000540434 SUPT6HQ7KZ85 1726 aaKnown RBP18.28■□□□□ 0.52
TMEM258-205ENST00000540434 ITSN2Q9NZM3 1697 aa18.28■□□□□ 0.52
TMEM258-205ENST00000540434 MYO3AQ8NEV4 1616 aa18.27■□□□□ 0.52
TMEM258-205ENST00000540434 ABCC1P33527 1531 aa18.27■□□□□ 0.51
TMEM258-205ENST00000540434 FYCO1Q9BQS8 1478 aa18.26■□□□□ 0.51
TMEM258-205ENST00000540434 ALKQ9UM73 1620 aa18.26■□□□□ 0.51
TMEM258-205ENST00000540434 CEP170BQ9Y4F5 1589 aaPredicted RBP18.25■□□□□ 0.51
TMEM258-205ENST00000540434 PREX2Q70Z35 1606 aa18.25■□□□□ 0.51
TMEM258-205ENST00000540434 ZNF142P52746 1687 aaPredicted RBP18.25■□□□□ 0.51
TMEM258-205ENST00000540434 CLTCQ00610 1675 aaKnown RBP18.22■□□□□ 0.51
TMEM258-205ENST00000540434 PTPRKQ15262 1439 aa18.21■□□□□ 0.51
TMEM258-205ENST00000540434 CCDC18Q5T9S5 1454 aa18.2■□□□□ 0.5
TMEM258-205ENST00000540434 CDC42BPAQ5VT25 1732 aa18.2■□□□□ 0.5
TMEM258-205ENST00000540434 SHANK2Q9UPX8 1470 aa18.2■□□□□ 0.5
TMEM258-205ENST00000540434 CPS1P31327 1500 aa18.18■□□□□ 0.5
TMEM258-205ENST00000540434 SAMD9LQ8IVG5 1584 aa18.18■□□□□ 0.5
TMEM258-205ENST00000540434 VPS8Q8N3P4 1428 aa18.16■□□□□ 0.5
TMEM258-205ENST00000540434 NEURL4Q96JN8 1562 aa18.16■□□□□ 0.5
TMEM258-205ENST00000540434 DNMT1P26358 1616 aaKnown RBP18.15■□□□□ 0.5
TMEM258-205ENST00000540434 GGT6Q6P531 493 aa18.14■□□□□ 0.49
TMEM258-205ENST00000540434 POTEAQ6S8J7 498 aa18.14■□□□□ 0.49
TMEM258-205ENST00000540434 A2ML1A8K2U0 1454 aa18.12■□□□□ 0.49
TMEM258-205ENST00000540434 PLXNC1O60486 1568 aa18.12■□□□□ 0.49
TMEM258-205ENST00000540434 VWDEQ8N2E2 1590 aa18.12■□□□□ 0.49
TMEM258-205ENST00000540434 POLR1AO95602 1720 aaPredicted RBP18.11■□□□□ 0.49
TMEM258-205ENST00000540434 ZNF777Q9ULD5 760 aaPredicted RBP18.1■□□□□ 0.49
TMEM258-205ENST00000540434 SPAG9O60271 1321 aaKnown RBP18.09■□□□□ 0.49
TMEM258-205ENST00000540434 KANK4Q5T7N3 995 aaPredicted RBP18.09■□□□□ 0.49
TMEM258-205ENST00000540434 SYCP2Q9BX26 1530 aa18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms