RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 HECW1Q76N89 1606 aa19.54■□□□□ 0.72
CLSTN3-209ENST00000539982 FER1L4A9Z1Z3 1794 aa19.5■□□□□ 0.71
CLSTN3-209ENST00000539982 ATP10AO60312 1499 aa19.5■□□□□ 0.71
CLSTN3-209ENST00000539982 EFCAB2Q5VUJ9 269 aa19.49■□□□□ 0.71
CLSTN3-209ENST00000539982 CDK13Q14004 1512 aaKnown RBP19.48■□□□□ 0.71
CLSTN3-209ENST00000539982 ARHGEF12Q9NZN5 1544 aa19.47■□□□□ 0.71
CLSTN3-209ENST00000539982 C9orf84Q5VXU9 1444 aa19.46■□□□□ 0.71
CLSTN3-209ENST00000539982 CEBPAP49715 358 aaPredicted RBP19.46■□□□□ 0.71
CLSTN3-209ENST00000539982 DMRT2Q9Y5R5 561 aa19.46■□□□□ 0.71
CLSTN3-209ENST00000539982 CDK11AQ9UQ88 783 aaPredicted RBP19.44■□□□□ 0.7
CLSTN3-209ENST00000539982 ATP1B4Q9UN42 357 aaPredicted RBP19.43■□□□□ 0.7
CLSTN3-209ENST00000539982 PREX1Q8TCU6 1659 aa19.43■□□□□ 0.7
CLSTN3-209ENST00000539982 AFAP1Q8N556 730 aa19.4■□□□□ 0.7
CLSTN3-209ENST00000539982 MYO5CQ9NQX4 1742 aa19.39■□□□□ 0.69
CLSTN3-209ENST00000539982 FMN1Q68DA7 1419 aa19.38■□□□□ 0.69
CLSTN3-209ENST00000539982 ZNF518AQ6AHZ1 1483 aa19.38■□□□□ 0.69
CLSTN3-209ENST00000539982 MYT1LQ9UL68 1186 aa19.37■□□□□ 0.69
CLSTN3-209ENST00000539982 SETD1BQ9UPS6 1966 aaKnown RBP19.37■□□□□ 0.69
CLSTN3-209ENST00000539982 STRCQ7RTU9 1775 aa19.37■□□□□ 0.69
CLSTN3-209ENST00000539982 UHRF1BP1Q6BDS2 1440 aa19.36■□□□□ 0.69
CLSTN3-209ENST00000539982 DISP3Q9P2K9 1392 aa19.35■□□□□ 0.69
CLSTN3-209ENST00000539982 UBTFP17480 764 aaKnown RBP19.35■□□□□ 0.69
CLSTN3-209ENST00000539982 ILDR2Q71H61 639 aa19.34■□□□□ 0.69
CLSTN3-209ENST00000539982 KDM5CP41229 1560 aa19.33■□□□□ 0.69
CLSTN3-209ENST00000539982 ARHGAP5Q13017 1502 aa19.33■□□□□ 0.68
CLSTN3-209ENST00000539982 TROQ12816 1431 aaPredicted RBP19.33■□□□□ 0.68
CLSTN3-209ENST00000539982 KIF14Q15058 1648 aa19.32■□□□□ 0.68
CLSTN3-209ENST00000539982 SOCS7O14512 581 aa19.31■□□□□ 0.68
CLSTN3-209ENST00000539982 PTPRTO14522 1441 aa19.31■□□□□ 0.68
CLSTN3-209ENST00000539982 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
CLSTN3-209ENST00000539982 ESF1Q9H501 851 aaKnown RBP19.3■□□□□ 0.68
CLSTN3-209ENST00000539982 CLIP1P30622 1438 aa19.3■□□□□ 0.68
CLSTN3-209ENST00000539982 ARHGAP35Q9NRY4 1499 aa19.29■□□□□ 0.68
CLSTN3-209ENST00000539982 MLH3Q9UHC1 1453 aa19.29■□□□□ 0.68
CLSTN3-209ENST00000539982 REREQ9P2R6 1566 aa19.29■□□□□ 0.68
CLSTN3-209ENST00000539982 DIP2CQ9Y2E4 1556 aa19.28■□□□□ 0.68
CLSTN3-209ENST00000539982 TRAPPC8Q9Y2L5 1435 aa19.26■□□□□ 0.67
CLSTN3-209ENST00000539982 AGLP35573 1532 aa19.25■□□□□ 0.67
CLSTN3-209ENST00000539982 C3P01024 1663 aa19.25■□□□□ 0.67
CLSTN3-209ENST00000539982 CDC42BPBQ9Y5S2 1711 aa19.23■□□□□ 0.67
CLSTN3-209ENST00000539982 ABCA6Q8N139 1617 aa19.23■□□□□ 0.67
CLSTN3-209ENST00000539982 CNTLNQ9NXG0 1405 aa19.2■□□□□ 0.66
CLSTN3-209ENST00000539982 LTBP4Q8N2S1 1624 aa19.2■□□□□ 0.66
CLSTN3-209ENST00000539982 LRRIQ1Q96JM4 1722 aa19.19■□□□□ 0.66
CLSTN3-209ENST00000539982 NCOA1Q15788 1441 aa19.18■□□□□ 0.66
CLSTN3-209ENST00000539982 IQSEC2Q5JU85 1478 aa19.18■□□□□ 0.66
CLSTN3-209ENST00000539982 ABCC1P33527 1531 aa19.18■□□□□ 0.66
CLSTN3-209ENST00000539982 PREX2Q70Z35 1606 aa19.17■□□□□ 0.66
CLSTN3-209ENST00000539982 SPATA31D1Q6ZQQ2 1576 aa19.15■□□□□ 0.66
CLSTN3-209ENST00000539982 ITSN2Q9NZM3 1697 aa19.15■□□□□ 0.66
CLSTN3-209ENST00000539982 KIDINS220Q9ULH0 1771 aa19.15■□□□□ 0.66
CLSTN3-209ENST00000539982 ZMYM3Q14202 1370 aa19.14■□□□□ 0.65
CLSTN3-209ENST00000539982 NPATQ14207 1427 aa19.14■□□□□ 0.65
CLSTN3-209ENST00000539982 CASKIN1Q8WXD9 1431 aa19.13■□□□□ 0.65
CLSTN3-209ENST00000539982 CCDC18Q5T9S5 1454 aa19.12■□□□□ 0.65
CLSTN3-209ENST00000539982 CAMSAP1Q5T5Y3 1602 aa19.11■□□□□ 0.65
CLSTN3-209ENST00000539982 ZNF777Q9ULD5 760 aaPredicted RBP19.11■□□□□ 0.65
CLSTN3-209ENST00000539982 NCKAP5LQ9HCH0 1330 aa19.1■□□□□ 0.65
CLSTN3-209ENST00000539982 SPAG9O60271 1321 aaKnown RBP19.09■□□□□ 0.65
CLSTN3-209ENST00000539982 MROH2AA6NES4 1674 aa19.09■□□□□ 0.65
CLSTN3-209ENST00000539982 SAMD9LQ8IVG5 1584 aa19.09■□□□□ 0.65
CLSTN3-209ENST00000539982 CDC42BPAQ5VT25 1732 aa19.08■□□□□ 0.65
CLSTN3-209ENST00000539982 HNRNPMP52272 730 aaKnown RBP eCLIP19.08■□□□□ 0.64
CLSTN3-209ENST00000539982 PKD2Q13563 968 aa19.07■□□□□ 0.64
CLSTN3-209ENST00000539982 ZNF335Q9H4Z2 1342 aaPredicted RBP19.06■□□□□ 0.64
CLSTN3-209ENST00000539982 UBAP1LF5GYI3 381 aa19.06■□□□□ 0.64
CLSTN3-209ENST00000539982 GPATCH8Q9UKJ3 1502 aaKnown RBP19.04■□□□□ 0.64
CLSTN3-209ENST00000539982 SUPT6HQ7KZ85 1726 aaKnown RBP19.03■□□□□ 0.64
CLSTN3-209ENST00000539982 CHIC1Q5VXU3 224 aa19.03■□□□□ 0.64
CLSTN3-209ENST00000539982 KIAA1107Q9UPP5 1409 aa19.02■□□□□ 0.64
CLSTN3-209ENST00000539982 SYCP2Q9BX26 1530 aa19.02■□□□□ 0.64
CLSTN3-209ENST00000539982 GGT6Q6P531 493 aa19.02■□□□□ 0.64
CLSTN3-209ENST00000539982 PLA2R1Q13018 1463 aa19.02■□□□□ 0.63
CLSTN3-209ENST00000539982 CFDP1Q9UEE9 299 aaPredicted RBP19.01■□□□□ 0.63
CLSTN3-209ENST00000539982 PPP6R1Q9UPN7 881 aa19.01■□□□□ 0.63
CLSTN3-209ENST00000539982 PTPRKQ15262 1439 aa19■□□□□ 0.63
CLSTN3-209ENST00000539982 A2MP01023 1474 aa19■□□□□ 0.63
CLSTN3-209ENST00000539982 FYCO1Q9BQS8 1478 aa19■□□□□ 0.63
CLSTN3-209ENST00000539982 CLTCQ00610 1675 aaKnown RBP19■□□□□ 0.63
CLSTN3-209ENST00000539982 ATP7AQ04656 1500 aa19■□□□□ 0.63
CLSTN3-209ENST00000539982 TCOF1Q13428 1488 aaKnown RBP18.99■□□□□ 0.63
CLSTN3-209ENST00000539982 PLEKHH2Q8IVE3 1493 aa18.99■□□□□ 0.63
CLSTN3-209ENST00000539982 ZNF142P52746 1687 aaPredicted RBP18.98■□□□□ 0.63
CLSTN3-209ENST00000539982 PLXNC1O60486 1568 aa18.98■□□□□ 0.63
CLSTN3-209ENST00000539982 MYO3AQ8NEV4 1616 aa18.97■□□□□ 0.63
CLSTN3-209ENST00000539982 CEP170BQ9Y4F5 1589 aaPredicted RBP18.97■□□□□ 0.63
CLSTN3-209ENST00000539982 CCNB3Q8WWL7 1395 aa18.95■□□□□ 0.62
CLSTN3-209ENST00000539982 INO80Q9ULG1 1556 aaPredicted RBP18.95■□□□□ 0.62
CLSTN3-209ENST00000539982 A2ML1A8K2U0 1454 aa18.9■□□□□ 0.62
CLSTN3-209ENST00000539982 ADGBQ8N7X0 1667 aa18.89■□□□□ 0.61
CLSTN3-209ENST00000539982 TOM1O60784 492 aa18.89■□□□□ 0.61
CLSTN3-209ENST00000539982 ZNF644Q9H582 1327 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-209ENST00000539982 HSPA1LP34931 641 aa18.88■□□□□ 0.61
CLSTN3-209ENST00000539982 MTUS2Q5JR59 1369 aa18.88■□□□□ 0.61
CLSTN3-209ENST00000539982 DNMT1P26358 1616 aaKnown RBP18.88■□□□□ 0.61
CLSTN3-209ENST00000539982 RTEL1-TNFRSF6BF6WH68 1400 aa18.86■□□□□ 0.61
CLSTN3-209ENST00000539982 DHX29Q7Z478 1369 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-209ENST00000539982 SCAF1Q9H7N4 1312 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-209ENST00000539982 PIP4K2BP78356 416 aa18.86■□□□□ 0.61
CLSTN3-209ENST00000539982 MBD5Q9P267 1494 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms