RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 CTTNBP2Q8WZ74 1663 aa15.97■□□□□ 0.15
USP28-205ENST00000537706 ARHGEF12Q9NZN5 1544 aa15.96■□□□□ 0.15
USP28-205ENST00000537706 PHF23Q9BUL5 403 aaPredicted RBP15.96■□□□□ 0.14
USP28-205ENST00000537706 PLEKHD1A6NEE1 506 aa15.94■□□□□ 0.14
USP28-205ENST00000537706 ESF1Q9H501 851 aaKnown RBP15.94■□□□□ 0.14
USP28-205ENST00000537706 C9orf84Q5VXU9 1444 aa15.94■□□□□ 0.14
USP28-205ENST00000537706 P3H3Q8IVL6 736 aa15.93■□□□□ 0.14
USP28-205ENST00000537706 ATP10AO60312 1499 aa15.93■□□□□ 0.14
USP28-205ENST00000537706 HECW1Q76N89 1606 aa15.89■□□□□ 0.13
USP28-205ENST00000537706 MED1Q15648 1581 aaPredicted RBP15.88■□□□□ 0.13
USP28-205ENST00000537706 SCAF1Q9H7N4 1312 aaKnown RBP15.88■□□□□ 0.13
USP28-205ENST00000537706 SETD1BQ9UPS6 1966 aaKnown RBP15.87■□□□□ 0.13
USP28-205ENST00000537706 SIGLEC1Q9BZZ2 1709 aa15.87■□□□□ 0.13
USP28-205ENST00000537706 NCOA1Q15788 1441 aa15.87■□□□□ 0.13
USP28-205ENST00000537706 RAPGEF6Q8TEU7 1601 aa15.87■□□□□ 0.13
USP28-205ENST00000537706 SCAPERQ9BY12 1400 aa15.86■□□□□ 0.13
USP28-205ENST00000537706 MYT1LQ9UL68 1186 aa15.85■□□□□ 0.13
USP28-205ENST00000537706 TRAPPC8Q9Y2L5 1435 aa15.85■□□□□ 0.13
USP28-205ENST00000537706 HSPA1LP34931 641 aa15.83■□□□□ 0.12
USP28-205ENST00000537706 ZNF335Q9H4Z2 1342 aaPredicted RBP15.82■□□□□ 0.12
USP28-205ENST00000537706 TOM1O60784 492 aa15.81■□□□□ 0.12
USP28-205ENST00000537706 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.8■□□□□ 0.12
USP28-205ENST00000537706 PIP4K2BP78356 416 aa15.8■□□□□ 0.12
USP28-205ENST00000537706 NUP153P49790 1475 aaKnown RBP15.79■□□□□ 0.12
USP28-205ENST00000537706 PKD2Q13563 968 aa15.79■□□□□ 0.12
USP28-205ENST00000537706 EFCAB2Q5VUJ9 269 aa15.78■□□□□ 0.12
USP28-205ENST00000537706 CNTLNQ9NXG0 1405 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 CAMSAP1Q5T5Y3 1602 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 NCKAP5LQ9HCH0 1330 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 PLCH2O75038 1416 aa15.76■□□□□ 0.11
USP28-205ENST00000537706 ZNF518AQ6AHZ1 1483 aa15.74■□□□□ 0.11
USP28-205ENST00000537706 PRXQ9BXM0 1461 aa15.73■□□□□ 0.11
USP28-205ENST00000537706 C3P01024 1663 aa15.73■□□□□ 0.11
USP28-205ENST00000537706 PPP6R1Q9UPN7 881 aa15.72■□□□□ 0.11
USP28-205ENST00000537706 NPATQ14207 1427 aa15.71■□□□□ 0.11
USP28-205ENST00000537706 SAMD9Q5K651 1589 aa15.71■□□□□ 0.11
USP28-205ENST00000537706 AGLP35573 1532 aa15.69■□□□□ 0.1
USP28-205ENST00000537706 REREQ9P2R6 1566 aa15.69■□□□□ 0.1
USP28-205ENST00000537706 PLA2R1Q13018 1463 aa15.69■□□□□ 0.1
USP28-205ENST00000537706 AFAP1Q8N556 730 aa15.66■□□□□ 0.1
USP28-205ENST00000537706 PTPRKQ15262 1439 aa15.66■□□□□ 0.1
USP28-205ENST00000537706 CPS1P31327 1500 aa15.65■□□□□ 0.1
USP28-205ENST00000537706 DIP2CQ9Y2E4 1556 aa15.64■□□□□ 0.09
USP28-205ENST00000537706 CDK11AQ9UQ88 783 aaPredicted RBP15.63■□□□□ 0.09
USP28-205ENST00000537706 KDM5CP41229 1560 aa15.63■□□□□ 0.09
USP28-205ENST00000537706 RANGAP1P46060 587 aaPredicted RBP15.62■□□□□ 0.09
USP28-205ENST00000537706 TCOF1Q13428 1488 aaKnown RBP15.61■□□□□ 0.09
USP28-205ENST00000537706 MLH3Q9UHC1 1453 aa15.61■□□□□ 0.09
USP28-205ENST00000537706 ZMYM3Q14202 1370 aa15.61■□□□□ 0.09
USP28-205ENST00000537706 ARHGAP5Q13017 1502 aa15.59■□□□□ 0.09
USP28-205ENST00000537706 MYO5CQ9NQX4 1742 aa15.58■□□□□ 0.09
USP28-205ENST00000537706 MROH2AA6NES4 1674 aa15.56■□□□□ 0.08
USP28-205ENST00000537706 SHANK2Q9UPX8 1470 aa15.56■□□□□ 0.08
USP28-205ENST00000537706 CEP170BQ9Y4F5 1589 aaPredicted RBP15.55■□□□□ 0.08
USP28-205ENST00000537706 ABCA6Q8N139 1617 aa15.55■□□□□ 0.08
USP28-205ENST00000537706 SENP3Q9H4L4 574 aaPredicted RBP15.55■□□□□ 0.08
USP28-205ENST00000537706 ATP1B4Q9UN42 357 aaPredicted RBP15.55■□□□□ 0.08
USP28-205ENST00000537706 CDK13Q14004 1512 aaKnown RBP15.54■□□□□ 0.08
USP28-205ENST00000537706 ZNF142P52746 1687 aaPredicted RBP15.54■□□□□ 0.08
USP28-205ENST00000537706 SUPT6HQ7KZ85 1726 aaKnown RBP15.53■□□□□ 0.08
USP28-205ENST00000537706 MYO3AQ8NEV4 1616 aa15.53■□□□□ 0.08
USP28-205ENST00000537706 CLIP1P30622 1438 aa15.53■□□□□ 0.08
USP28-205ENST00000537706 RGS17Q9UGC6 210 aaPredicted RBP15.51■□□□□ 0.07
USP28-205ENST00000537706 KIF14Q15058 1648 aa15.5■□□□□ 0.07
USP28-205ENST00000537706 A2ML1A8K2U0 1454 aa15.49■□□□□ 0.07
USP28-205ENST00000537706 CSRNP3Q8WYN3 585 aa15.49■□□□□ 0.07
USP28-205ENST00000537706 ANKLE2Q86XL3 938 aa15.47■□□□□ 0.07
USP28-205ENST00000537706 TROQ12816 1431 aaPredicted RBP15.46■□□□□ 0.07
USP28-205ENST00000537706 POTEAQ6S8J7 498 aa15.44■□□□□ 0.06
USP28-205ENST00000537706 GGT6Q6P531 493 aa15.43■□□□□ 0.06
USP28-205ENST00000537706 ABCC1P33527 1531 aa15.43■□□□□ 0.06
USP28-205ENST00000537706 SPAG9O60271 1321 aaKnown RBP15.42■□□□□ 0.06
USP28-205ENST00000537706 CLTCQ00610 1675 aaKnown RBP15.42■□□□□ 0.06
USP28-205ENST00000537706 FMN1Q68DA7 1419 aa15.41■□□□□ 0.06
USP28-205ENST00000537706 DNMT1P26358 1616 aaKnown RBP15.41■□□□□ 0.06
USP28-205ENST00000537706 THEMISQ8N1K5 641 aaPredicted RBP15.41■□□□□ 0.06
USP28-205ENST00000537706 KIDINS220Q9ULH0 1771 aa15.4■□□□□ 0.06
USP28-205ENST00000537706 POLR1AO95602 1720 aaPredicted RBP15.39■□□□□ 0.05
USP28-205ENST00000537706 NPHP4O75161 1426 aaPredicted RBP15.39■□□□□ 0.05
USP28-205ENST00000537706 VWDEQ8N2E2 1590 aa15.39■□□□□ 0.05
USP28-205ENST00000537706 ALKQ9UM73 1620 aa15.39■□□□□ 0.05
USP28-205ENST00000537706 ITSN2Q9NZM3 1697 aa15.39■□□□□ 0.05
USP28-205ENST00000537706 RNF17Q9BXT8 1623 aaKnown RBP15.38■□□□□ 0.05
USP28-205ENST00000537706 TNRQ92752 1358 aa15.38■□□□□ 0.05
USP28-205ENST00000537706 NEURL4Q96JN8 1562 aa15.38■□□□□ 0.05
USP28-205ENST00000537706 A2MP01023 1474 aa15.36■□□□□ 0.05
USP28-205ENST00000537706 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP28-205ENST00000537706 ZNF777Q9ULD5 760 aaPredicted RBP15.35■□□□□ 0.05
USP28-205ENST00000537706 SAMD9LQ8IVG5 1584 aa15.35■□□□□ 0.05
USP28-205ENST00000537706 LRRC7Q96NW7 1537 aa15.34■□□□□ 0.05
USP28-205ENST00000537706 PREX2Q70Z35 1606 aa15.34■□□□□ 0.05
USP28-205ENST00000537706 SYNMO15061 1565 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 FAM135AQ9P2D6 1515 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 CDC42BPBQ9Y5S2 1711 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 MED14O60244 1454 aa15.33■□□□□ 0.05
USP28-205ENST00000537706 UPF1Q92900 1129 aaKnown RBP eCLIP15.32■□□□□ 0.04
USP28-205ENST00000537706 EEA1Q15075 1411 aa15.31■□□□□ 0.04
USP28-205ENST00000537706 ATP7AQ04656 1500 aa15.3■□□□□ 0.04
USP28-205ENST00000537706 DEPDC5O75140 1603 aa15.29■□□□□ 0.04
USP28-205ENST00000537706 FAM135BQ49AJ0 1406 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms