RNA–Protein interactions for RNA: ENST00000533818.5

CSDE1-215, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-215ENST00000533818 PHF23Q9BUL5 403 aaPredicted RBP18.65■□□□□ 0.58
CSDE1-215ENST00000533818 MAGI2Q86UL8 1455 aa18.65■□□□□ 0.58
CSDE1-215ENST00000533818 ZMYM4Q5VZL5 1548 aa18.64■□□□□ 0.57
CSDE1-215ENST00000533818 HSPA1LP34931 641 aa18.63■□□□□ 0.57
CSDE1-215ENST00000533818 P3H3Q8IVL6 736 aa18.61■□□□□ 0.57
CSDE1-215ENST00000533818 ZNF335Q9H4Z2 1342 aaPredicted RBP18.59■□□□□ 0.57
CSDE1-215ENST00000533818 SCAF1Q9H7N4 1312 aaKnown RBP18.59■□□□□ 0.57
CSDE1-215ENST00000533818 SETD1BQ9UPS6 1966 aaKnown RBP18.59■□□□□ 0.57
CSDE1-215ENST00000533818 ATP10AO60312 1499 aa18.58■□□□□ 0.56
CSDE1-215ENST00000533818 NCOA1Q15788 1441 aa18.57■□□□□ 0.56
CSDE1-215ENST00000533818 PIP4K2BP78356 416 aa18.55■□□□□ 0.56
CSDE1-215ENST00000533818 HECW1Q76N89 1606 aa18.55■□□□□ 0.56
CSDE1-215ENST00000533818 C9orf84Q5VXU9 1444 aa18.54■□□□□ 0.56
CSDE1-215ENST00000533818 PLEKHD1A6NEE1 506 aa18.53■□□□□ 0.56
CSDE1-215ENST00000533818 CFAP74Q9C0B2 1584 aa18.52■□□□□ 0.56
CSDE1-215ENST00000533818 CTTNBP2Q8WZ74 1663 aa18.52■□□□□ 0.56
CSDE1-215ENST00000533818 NCKAP5LQ9HCH0 1330 aa18.5■□□□□ 0.55
CSDE1-215ENST00000533818 SCAPERQ9BY12 1400 aa18.5■□□□□ 0.55
CSDE1-215ENST00000533818 TRAPPC8Q9Y2L5 1435 aa18.5■□□□□ 0.55
CSDE1-215ENST00000533818 ESF1Q9H501 851 aaKnown RBP18.49■□□□□ 0.55
CSDE1-215ENST00000533818 TOM1O60784 492 aa18.46■□□□□ 0.55
CSDE1-215ENST00000533818 CAMSAP1Q5T5Y3 1602 aa18.43■□□□□ 0.54
CSDE1-215ENST00000533818 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.43■□□□□ 0.54
CSDE1-215ENST00000533818 RAPGEF6Q8TEU7 1601 aa18.42■□□□□ 0.54
CSDE1-215ENST00000533818 NUP153P49790 1475 aaKnown RBP18.41■□□□□ 0.54
CSDE1-215ENST00000533818 PKD2Q13563 968 aa18.41■□□□□ 0.54
CSDE1-215ENST00000533818 MYT1LQ9UL68 1186 aa18.4■□□□□ 0.54
CSDE1-215ENST00000533818 C3P01024 1663 aa18.4■□□□□ 0.54
CSDE1-215ENST00000533818 PLCH2O75038 1416 aa18.36■□□□□ 0.53
CSDE1-215ENST00000533818 PPP6R1Q9UPN7 881 aa18.36■□□□□ 0.53
CSDE1-215ENST00000533818 EFCAB2Q5VUJ9 269 aa18.35■□□□□ 0.53
CSDE1-215ENST00000533818 RGS17Q9UGC6 210 aaPredicted RBP18.35■□□□□ 0.53
CSDE1-215ENST00000533818 AFAP1Q8N556 730 aa18.34■□□□□ 0.53
CSDE1-215ENST00000533818 SENP3Q9H4L4 574 aaPredicted RBP18.32■□□□□ 0.52
CSDE1-215ENST00000533818 NPATQ14207 1427 aa18.31■□□□□ 0.52
CSDE1-215ENST00000533818 CNTLNQ9NXG0 1405 aa18.3■□□□□ 0.52
CSDE1-215ENST00000533818 ZNF518AQ6AHZ1 1483 aa18.29■□□□□ 0.52
CSDE1-215ENST00000533818 PLA2R1Q13018 1463 aa18.28■□□□□ 0.52
CSDE1-215ENST00000533818 PRXQ9BXM0 1461 aa18.28■□□□□ 0.52
CSDE1-215ENST00000533818 TCOF1Q13428 1488 aaKnown RBP18.26■□□□□ 0.51
CSDE1-215ENST00000533818 AGLP35573 1532 aa18.26■□□□□ 0.51
CSDE1-215ENST00000533818 PTPRKQ15262 1439 aa18.25■□□□□ 0.51
CSDE1-215ENST00000533818 ZMYM3Q14202 1370 aa18.25■□□□□ 0.51
CSDE1-215ENST00000533818 SAMD9Q5K651 1589 aa18.25■□□□□ 0.51
CSDE1-215ENST00000533818 REREQ9P2R6 1566 aa18.25■□□□□ 0.51
CSDE1-215ENST00000533818 DIP2CQ9Y2E4 1556 aa18.25■□□□□ 0.51
CSDE1-215ENST00000533818 CPS1P31327 1500 aa18.23■□□□□ 0.51
CSDE1-215ENST00000533818 RANGAP1P46060 587 aaPredicted RBP18.22■□□□□ 0.51
CSDE1-215ENST00000533818 POTEAQ6S8J7 498 aa18.21■□□□□ 0.51
CSDE1-215ENST00000533818 KDM5CP41229 1560 aa18.21■□□□□ 0.51
CSDE1-215ENST00000533818 SHANK2Q9UPX8 1470 aa18.2■□□□□ 0.5
CSDE1-215ENST00000533818 MLH3Q9UHC1 1453 aa18.18■□□□□ 0.5
CSDE1-215ENST00000533818 ABCA6Q8N139 1617 aa18.16■□□□□ 0.5
CSDE1-215ENST00000533818 ALKQ9UM73 1620 aa18.15■□□□□ 0.5
CSDE1-215ENST00000533818 CEP170BQ9Y4F5 1589 aaPredicted RBP18.14■□□□□ 0.49
CSDE1-215ENST00000533818 CDK13Q14004 1512 aaKnown RBP18.13■□□□□ 0.49
CSDE1-215ENST00000533818 ZNF142P52746 1687 aaPredicted RBP18.12■□□□□ 0.49
CSDE1-215ENST00000533818 ARHGAP5Q13017 1502 aa18.11■□□□□ 0.49
CSDE1-215ENST00000533818 MYO3AQ8NEV4 1616 aa18.11■□□□□ 0.49
CSDE1-215ENST00000533818 MROH2AA6NES4 1674 aa18.11■□□□□ 0.49
CSDE1-215ENST00000533818 SUPT6HQ7KZ85 1726 aaKnown RBP18.1■□□□□ 0.49
CSDE1-215ENST00000533818 MYO5CQ9NQX4 1742 aa18.1■□□□□ 0.49
CSDE1-215ENST00000533818 CDK11AQ9UQ88 783 aaPredicted RBP18.07■□□□□ 0.48
CSDE1-215ENST00000533818 ATP1B4Q9UN42 357 aaPredicted RBP18.06■□□□□ 0.48
CSDE1-215ENST00000533818 A2ML1A8K2U0 1454 aa18.05■□□□□ 0.48
CSDE1-215ENST00000533818 ANKLE2Q86XL3 938 aa18.04■□□□□ 0.48
CSDE1-215ENST00000533818 UPF1Q92900 1129 aaKnown RBP eCLIP18.04■□□□□ 0.48
CSDE1-215ENST00000533818 VWDEQ8N2E2 1590 aa18.03■□□□□ 0.48
CSDE1-215ENST00000533818 NEURL4Q96JN8 1562 aa18.01■□□□□ 0.47
CSDE1-215ENST00000533818 GGT6Q6P531 493 aa18.01■□□□□ 0.47
CSDE1-215ENST00000533818 DNMT1P26358 1616 aaKnown RBP18.01■□□□□ 0.47
CSDE1-215ENST00000533818 CLTCQ00610 1675 aaKnown RBP17.99■□□□□ 0.47
CSDE1-215ENST00000533818 KIDINS220Q9ULH0 1771 aa17.99■□□□□ 0.47
CSDE1-215ENST00000533818 KIF14Q15058 1648 aa17.98■□□□□ 0.47
CSDE1-215ENST00000533818 SETD1AO15047 1707 aaKnown RBP17.98■□□□□ 0.47
CSDE1-215ENST00000533818 SRCAPQ6ZRS2 3230 aa17.98■□□□□ 0.47
CSDE1-215ENST00000533818 LRRC7Q96NW7 1537 aa17.98■□□□□ 0.47
CSDE1-215ENST00000533818 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.96■□□□□ 0.47
CSDE1-215ENST00000533818 CSRNP3Q8WYN3 585 aa17.96■□□□□ 0.47
CSDE1-215ENST00000533818 POLR1AO95602 1720 aaPredicted RBP17.95■□□□□ 0.46
CSDE1-215ENST00000533818 THEMISQ8N1K5 641 aaPredicted RBP17.95■□□□□ 0.46
CSDE1-215ENST00000533818 NPHP4O75161 1426 aaPredicted RBP17.95■□□□□ 0.46
CSDE1-215ENST00000533818 TROQ12816 1431 aaPredicted RBP17.95■□□□□ 0.46
CSDE1-215ENST00000533818 SPAG9O60271 1321 aaKnown RBP17.94■□□□□ 0.46
CSDE1-215ENST00000533818 ABCC1P33527 1531 aa17.93■□□□□ 0.46
CSDE1-215ENST00000533818 CLIP1P30622 1438 aa17.93■□□□□ 0.46
CSDE1-215ENST00000533818 RNF17Q9BXT8 1623 aaKnown RBP17.93■□□□□ 0.46
CSDE1-215ENST00000533818 FBXO31Q5XUX0 539 aaPredicted RBP17.91■□□□□ 0.46
CSDE1-215ENST00000533818 TNRQ92752 1358 aa17.91■□□□□ 0.46
CSDE1-215ENST00000533818 MED14O60244 1454 aa17.9■□□□□ 0.46
CSDE1-215ENST00000533818 CDC42BPBQ9Y5S2 1711 aa17.89■□□□□ 0.45
CSDE1-215ENST00000533818 ITSN2Q9NZM3 1697 aa17.88■□□□□ 0.45
CSDE1-215ENST00000533818 FAM135BQ49AJ0 1406 aa17.88■□□□□ 0.45
CSDE1-215ENST00000533818 TRIM52Q96A61 297 aa17.87■□□□□ 0.45
CSDE1-215ENST00000533818 ZNF777Q9ULD5 760 aaPredicted RBP17.87■□□□□ 0.45
CSDE1-215ENST00000533818 A2MP01023 1474 aa17.87■□□□□ 0.45
CSDE1-215ENST00000533818 SAMD9LQ8IVG5 1584 aa17.87■□□□□ 0.45
CSDE1-215ENST00000533818 HNRNPMP52272 730 aaKnown RBP eCLIP17.84■□□□□ 0.45
CSDE1-215ENST00000533818 STRCP1A6NGW2 1772 aa17.84■□□□□ 0.45
CSDE1-215ENST00000533818 SYNMO15061 1565 aa17.83■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms