RNA–Protein interactions for RNA: ENST00000529919.5

CTNND1-222, Transcript of catenin delta 1, human

TSL 5 BASIC

Gene CTNND1, Length 4,780 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-222	ENST00000529919	RAPGEF2	Q9Y4G8	1499 aa		10.3	□□□□□ -0.76
CTNND1-222	ENST00000529919	FTSJ3	Q8IY81	847 aa	Known RBP	10.3	□□□□□ -0.76
CTNND1-222	ENST00000529919	NEUROD2	Q15784	382 aa		10.29	□□□□□ -0.76
CTNND1-222	ENST00000529919	STK26	Q9P289	416 aa		10.29	□□□□□ -0.76
CTNND1-222	ENST00000529919	AQR	O60306	1485 aa	Known RBP eCLIP	10.29	□□□□□ -0.76	2e-9	■■■□□ 18.1
CTNND1-222	ENST00000529919	GAPVD1	Q14C86	1478 aa		10.28	□□□□□ -0.76
CTNND1-222	ENST00000529919	SOX12	O15370	315 aa		10.28	□□□□□ -0.76
CTNND1-222	ENST00000529919	DCAF11	Q8TEB1	546 aa		10.27	□□□□□ -0.77
CTNND1-222	ENST00000529919	FRAT1	Q92837	279 aa	Predicted RBP	10.27	□□□□□ -0.77
CTNND1-222	ENST00000529919	RAD54L2	Q9Y4B4	1467 aa		10.27	□□□□□ -0.77
CTNND1-222	ENST00000529919	FHOD3	Q2V2M9	1422 aa		10.27	□□□□□ -0.77
CTNND1-222	ENST00000529919	SRPK2	P78362	688 aa	Known RBP	10.26	□□□□□ -0.77
CTNND1-222	ENST00000529919	KNSTRN	Q9Y448	316 aa		10.26	□□□□□ -0.77
CTNND1-222	ENST00000529919	CC2D2A	Q9P2K1	1620 aa		10.26	□□□□□ -0.77
CTNND1-222	ENST00000529919	CASC1	Q6TDU7	716 aa		10.26	□□□□□ -0.77
CTNND1-222	ENST00000529919	NES	P48681	1621 aa		10.26	□□□□□ -0.77
CTNND1-222	ENST00000529919	RSPH4A	Q5TD94	716 aa		10.26	□□□□□ -0.77
CTNND1-222	ENST00000529919	CFAP53	Q96M91	514 aa		10.25	□□□□□ -0.77
CTNND1-222	ENST00000529919	HSP90AB1	P08238	724 aa	Known RBP	10.25	□□□□□ -0.77
CTNND1-222	ENST00000529919	PKD2	Q13563	968 aa		10.25	□□□□□ -0.77
CTNND1-222	ENST00000529919	FGD5	Q6ZNL6	1462 aa		10.24	□□□□□ -0.77
CTNND1-222	ENST00000529919	PAK3	O75914	559 aa	Predicted RBP	10.23	□□□□□ -0.77
CTNND1-222	ENST00000529919	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.23	□□□□□ -0.77
CTNND1-222	ENST00000529919	SIN3A	Q96ST3	1273 aa		10.23	□□□□□ -0.77
CTNND1-222	ENST00000529919	MSN	P26038	577 aa	Known RBP	10.23	□□□□□ -0.77
CTNND1-222	ENST00000529919	KANK4	Q5T7N3	995 aa	Predicted RBP	10.22	□□□□□ -0.77
CTNND1-222	ENST00000529919	CCDC9	Q9Y3X0	531 aa	Known RBP	10.22	□□□□□ -0.77
CTNND1-222	ENST00000529919	NPHP1	O15259	732 aa		10.22	□□□□□ -0.77
CTNND1-222	ENST00000529919	L1TD1	Q5T7N2	865 aa	Known RBP	10.22	□□□□□ -0.77
CTNND1-222	ENST00000529919	NUP155	O75694	1391 aa		10.22	□□□□□ -0.77
CTNND1-222	ENST00000529919	ANKRD30A	Q9BXX3	1397 aa		10.22	□□□□□ -0.77
CTNND1-222	ENST00000529919	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	10.21	□□□□□ -0.77
CTNND1-222	ENST00000529919	NUTM2D	Q5VT03	806 aa	Predicted RBP	10.21	□□□□□ -0.78
CTNND1-222	ENST00000529919	ARHGAP35	Q9NRY4	1499 aa		10.21	□□□□□ -0.78
CTNND1-222	ENST00000529919	NRDC	O43847	1150 aa		10.21	□□□□□ -0.78
CTNND1-222	ENST00000529919	CHAF1A	Q13111	956 aa	Predicted RBP	10.21	□□□□□ -0.78
CTNND1-222	ENST00000529919	MRC2	Q9UBG0	1479 aa		10.2	□□□□□ -0.78
CTNND1-222	ENST00000529919	SPRYD3	Q8NCJ5	442 aa		10.19	□□□□□ -0.78
CTNND1-222	ENST00000529919	PNN	Q9H307	717 aa	Known RBP	10.19	□□□□□ -0.78
CTNND1-222	ENST00000529919	HSCB	Q8IWL3	235 aa		10.19	□□□□□ -0.78
CTNND1-222	ENST00000529919	TAOK2	Q9UL54	1235 aa		10.19	□□□□□ -0.78
CTNND1-222	ENST00000529919	CCDC18	Q5T9S5	1454 aa		10.18	□□□□□ -0.78
CTNND1-222	ENST00000529919	MAPK8IP3	Q9UPT6	1336 aa		10.18	□□□□□ -0.78
CTNND1-222	ENST00000529919	VPS8	Q8N3P4	1428 aa		10.18	□□□□□ -0.78
CTNND1-222	ENST00000529919	CSB-PGBD3	P0DP91	1061 aa		10.18	□□□□□ -0.78
CTNND1-222	ENST00000529919	FGD1	P98174	961 aa		10.18	□□□□□ -0.78
CTNND1-222	ENST00000529919	FOXD1	Q16676	465 aa		10.18	□□□□□ -0.78
CTNND1-222	ENST00000529919	IGF1R	P08069	1367 aa		10.17	□□□□□ -0.78
CTNND1-222	ENST00000529919	GOLGA6L4	A6NEF3	574 aa		10.17	□□□□□ -0.78
CTNND1-222	ENST00000529919	NUDC	Q9Y266	331 aa		10.17	□□□□□ -0.78
CTNND1-222	ENST00000529919	GRIN2B	Q13224	1484 aa		10.17	□□□□□ -0.78
CTNND1-222	ENST00000529919	ARID3A	Q99856	593 aa		10.17	□□□□□ -0.78
CTNND1-222	ENST00000529919	GOLGA6L6	A8MZA4	724 aa		10.16	□□□□□ -0.78
CTNND1-222	ENST00000529919	NUTM2F	A1L443	756 aa		10.16	□□□□□ -0.78
CTNND1-222	ENST00000529919	GZF1	Q9H116	711 aa	Predicted RBP	10.16	□□□□□ -0.78
CTNND1-222	ENST00000529919	TSHZ2	Q9NRE2	1034 aa		10.16	□□□□□ -0.78
CTNND1-222	ENST00000529919	KCNJ4	P48050	445 aa		10.15	□□□□□ -0.78
CTNND1-222	ENST00000529919	CC2D1B	Q5T0F9	858 aa	Known RBP	10.15	□□□□□ -0.78
CTNND1-222	ENST00000529919	TULP1	O00294	542 aa	Predicted RBP	10.15	□□□□□ -0.78
CTNND1-222	ENST00000529919	TMF1	P82094	1093 aa		10.15	□□□□□ -0.78
CTNND1-222	ENST00000529919	SLK	Q9H2G2	1235 aa	Predicted RBP	10.15	□□□□□ -0.78
CTNND1-222	ENST00000529919	MS4A1	P11836	297 aa		10.14	□□□□□ -0.79
CTNND1-222	ENST00000529919	U2SURP	O15042	1029 aa	Known RBP	10.14	□□□□□ -0.79
CTNND1-222	ENST00000529919	CHMP4B	Q9H444	224 aa	Known RBP	10.14	□□□□□ -0.79
CTNND1-222	ENST00000529919	NGDN	Q8NEJ9	315 aa	Known RBP	10.14	□□□□□ -0.79
CTNND1-222	ENST00000529919	PRG4	Q92954	1404 aa	Predicted RBP	10.13	□□□□□ -0.79
CTNND1-222	ENST00000529919	IFT140	Q96RY7	1462 aa		10.13	□□□□□ -0.79
CTNND1-222	ENST00000529919	CFTR	P13569	1480 aa		10.13	□□□□□ -0.79
CTNND1-222	ENST00000529919	CCER2	I3L3R5	266 aa		10.13	□□□□□ -0.79
CTNND1-222	ENST00000529919	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.13	□□□□□ -0.79
CTNND1-222	ENST00000529919	NAP1L2	Q9ULW6	460 aa	Predicted RBP	10.12	□□□□□ -0.79
CTNND1-222	ENST00000529919	DRC7	Q8IY82	874 aa		10.11	□□□□□ -0.79
CTNND1-222	ENST00000529919	MPHOSPH9	Q99550	1183 aa		10.11	□□□□□ -0.79
CTNND1-222	ENST00000529919	OS9	Q13438	667 aa	Predicted RBP	10.11	□□□□□ -0.79
CTNND1-222	ENST00000529919	KIAA2012	Q0VF49	1180 aa		10.1	□□□□□ -0.79
CTNND1-222	ENST00000529919	GBP4	Q96PP9	640 aa		10.09	□□□□□ -0.79
CTNND1-222	ENST00000529919	RUSC2	Q8N2Y8	1516 aa		10.09	□□□□□ -0.79
CTNND1-222	ENST00000529919	TCERG1	O14776	1098 aa	Known RBP	10.08	□□□□□ -0.8
CTNND1-222	ENST00000529919	MORC1	Q86VD1	984 aa		10.07	□□□□□ -0.8
CTNND1-222	ENST00000529919	AFAP1	Q8N556	730 aa		10.07	□□□□□ -0.8
CTNND1-222	ENST00000529919	IPO9	Q96P70	1041 aa	Known RBP	10.07	□□□□□ -0.8
CTNND1-222	ENST00000529919	SETD5	Q9C0A6	1442 aa		10.07	□□□□□ -0.8
CTNND1-222	ENST00000529919	VGF	O15240	615 aa	Predicted RBP	10.06	□□□□□ -0.8
CTNND1-222	ENST00000529919	MCC	P23508	829 aa		10.06	□□□□□ -0.8
CTNND1-222	ENST00000529919	RCAN3	Q9UKA8	241 aa		10.06	□□□□□ -0.8
CTNND1-222	ENST00000529919	TIMELESS	Q9UNS1	1208 aa		10.06	□□□□□ -0.8
CTNND1-222	ENST00000529919	GOLGA6L3	A6NEY3	463 aa		10.05	□□□□□ -0.8
CTNND1-222	ENST00000529919	TNNT3	P45378	269 aa	Predicted RBP	10.05	□□□□□ -0.8
CTNND1-222	ENST00000529919	MEX3C	Q5U5Q3	659 aa	Known RBP	10.05	□□□□□ -0.8
CTNND1-222	ENST00000529919	TRAK1	Q9UPV9	953 aa		10.05	□□□□□ -0.8
CTNND1-222	ENST00000529919	HMGXB3	Q12766	1538 aa		10.05	□□□□□ -0.8
CTNND1-222	ENST00000529919	TOPBP1	Q92547	1522 aa		10.05	□□□□□ -0.8
CTNND1-222	ENST00000529919	APBB1	O00213	710 aa		10.05	□□□□□ -0.8
CTNND1-222	ENST00000529919	SNAPC4	Q5SXM2	1469 aa		10.04	□□□□□ -0.8
CTNND1-222	ENST00000529919	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10.03	□□□□□ -0.8
CTNND1-222	ENST00000529919	RTF1	Q92541	710 aa	Known RBP	10.03	□□□□□ -0.8
CTNND1-222	ENST00000529919	TERF2IP	Q9NYB0	399 aa		10.03	□□□□□ -0.8
CTNND1-222	ENST00000529919	RAPGEF3	O95398	923 aa		10.02	□□□□□ -0.8
CTNND1-222	ENST00000529919	HSPA5	P11021	654 aa	Known RBP	10.02	□□□□□ -0.81
CTNND1-222	ENST00000529919	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms