RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 DENND4BO75064 1496 aaPredicted RBP21.91■■□□□ 1.1
USH1C-207ENST00000527720 ADGBQ8N7X0 1667 aa21.9■■□□□ 1.1
USH1C-207ENST00000527720 PRG4Q92954 1404 aaPredicted RBP21.89■■□□□ 1.1
USH1C-207ENST00000527720 KDM5BQ9UGL1 1544 aa21.89■■□□□ 1.09
USH1C-207ENST00000527720 KIF14Q15058 1648 aa21.87■■□□□ 1.09
USH1C-207ENST00000527720 CROCC2H7BZ55 1655 aa21.87■■□□□ 1.09
USH1C-207ENST00000527720 CAMSAP2Q08AD1 1489 aa21.86■■□□□ 1.09
USH1C-207ENST00000527720 GPATCH8Q9UKJ3 1502 aaKnown RBP21.85■■□□□ 1.09
USH1C-207ENST00000527720 TRIM52Q96A61 297 aa21.85■■□□□ 1.09
USH1C-207ENST00000527720 MPHOSPH9Q99550 1183 aa21.82■■□□□ 1.08
USH1C-207ENST00000527720 CDC42BPAQ5VT25 1732 aa21.81■■□□□ 1.08
USH1C-207ENST00000527720 ADGRL2O95490 1459 aa21.81■■□□□ 1.08
USH1C-207ENST00000527720 ZNF644Q9H582 1327 aaPredicted RBP21.8■■□□□ 1.08
USH1C-207ENST00000527720 CFDP1Q9UEE9 299 aaPredicted RBP21.8■■□□□ 1.08
USH1C-207ENST00000527720 DDX10Q13206 875 aaKnown RBP21.78■■□□□ 1.08
USH1C-207ENST00000527720 CHD1O14646 1710 aa21.78■■□□□ 1.08
USH1C-207ENST00000527720 ATP10BO94823 1461 aa21.77■■□□□ 1.08
USH1C-207ENST00000527720 ABCC10Q5T3U5 1492 aa21.76■■□□□ 1.07
USH1C-207ENST00000527720 NCOA1Q15788 1441 aa21.75■■□□□ 1.07
USH1C-207ENST00000527720 PLEKHD1A6NEE1 506 aa21.75■■□□□ 1.07
USH1C-207ENST00000527720 PELP1Q8IZL8 1130 aaKnown RBP21.75■■□□□ 1.07
USH1C-207ENST00000527720 ANKRD30BQ9BXX2 1392 aa21.73■■□□□ 1.07
USH1C-207ENST00000527720 RPRD2Q5VT52 1461 aaKnown RBP21.73■■□□□ 1.07
USH1C-207ENST00000527720 SHROOM2Q13796 1616 aa21.73■■□□□ 1.07
USH1C-207ENST00000527720 SHANK2Q9UPX8 1470 aa21.72■■□□□ 1.07
USH1C-207ENST00000527720 PTPRGP23470 1445 aa21.69■■□□□ 1.06
USH1C-207ENST00000527720 ANKRD30AQ9BXX3 1397 aa21.69■■□□□ 1.06
USH1C-207ENST00000527720 HIRIP3Q9BW71 556 aaPredicted RBP21.67■■□□□ 1.06
USH1C-207ENST00000527720 PZPP20742 1482 aa21.67■■□□□ 1.06
USH1C-207ENST00000527720 CCER2I3L3R5 266 aa21.67■■□□□ 1.06
USH1C-207ENST00000527720 ARHGEF5Q12774 1597 aa21.65■■□□□ 1.06
USH1C-207ENST00000527720 TEX14Q8IWB6 1497 aa21.65■■□□□ 1.06
USH1C-207ENST00000527720 SLC4A1APQ9BWU0 796 aaKnown RBP21.64■■□□□ 1.06
USH1C-207ENST00000527720 ANP32CO43423 234 aa21.64■■□□□ 1.05
USH1C-207ENST00000527720 ZNF777Q9ULD5 760 aaPredicted RBP21.63■■□□□ 1.05
USH1C-207ENST00000527720 PREX2Q70Z35 1606 aa21.63■■□□□ 1.05
USH1C-207ENST00000527720 L3MBTL2Q969R5 705 aa21.62■■□□□ 1.05
USH1C-207ENST00000527720 CDC42BPBQ9Y5S2 1711 aa21.61■■□□□ 1.05
USH1C-207ENST00000527720 FOXD1Q16676 465 aa21.6■■□□□ 1.05
USH1C-207ENST00000527720 C9orf84Q5VXU9 1444 aa21.6■■□□□ 1.05
USH1C-207ENST00000527720 ANKRD50Q9ULJ7 1429 aa21.6■■□□□ 1.05
USH1C-207ENST00000527720 EIF4G2P78344 907 aaKnown RBP eCLIP21.59■■□□□ 1.05
USH1C-207ENST00000527720 KIAA1107Q9UPP5 1409 aa21.59■■□□□ 1.05
USH1C-207ENST00000527720 KCNH8Q96L42 1107 aa21.58■■□□□ 1.05
USH1C-207ENST00000527720 POLR1AO95602 1720 aaPredicted RBP21.58■■□□□ 1.04
USH1C-207ENST00000527720 KDM5DQ9BY66 1539 aa21.58■■□□□ 1.04
USH1C-207ENST00000527720 HSPA5P11021 654 aaKnown RBP21.57■■□□□ 1.04
USH1C-207ENST00000527720 SAMD9LQ8IVG5 1584 aa21.55■■□□□ 1.04
USH1C-207ENST00000527720 ABCC2Q92887 1545 aa21.54■■□□□ 1.04
USH1C-207ENST00000527720 MBD5Q9P267 1494 aa21.53■■□□□ 1.04
USH1C-207ENST00000527720 TSPY4P0CV99 314 aa21.53■■□□□ 1.04
USH1C-207ENST00000527720 TSPY10P0CW01 314 aa21.53■■□□□ 1.04
USH1C-207ENST00000527720 RSPH4AQ5TD94 716 aa21.52■■□□□ 1.04
USH1C-207ENST00000527720 CCDC141Q6ZP82 1450 aa21.51■■□□□ 1.03
USH1C-207ENST00000527720 WASHC2AQ641Q2 1341 aa21.5■■□□□ 1.03
USH1C-207ENST00000527720 MYO5CQ9NQX4 1742 aa21.49■■□□□ 1.03
USH1C-207ENST00000527720 MAST1Q9Y2H9 1570 aa21.49■■□□□ 1.03
USH1C-207ENST00000527720 TTC37Q6PGP7 1564 aa21.47■■□□□ 1.03
USH1C-207ENST00000527720 NBPF8Q3BBV2 869 aa21.47■■□□□ 1.03
USH1C-207ENST00000527720 CLASP1Q7Z460 1538 aa21.47■■□□□ 1.03
USH1C-207ENST00000527720 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.46■■□□□ 1.03
USH1C-207ENST00000527720 KIF15Q9NS87 1388 aa21.46■■□□□ 1.03
USH1C-207ENST00000527720 SPATA31E1Q6ZUB1 1445 aa21.46■■□□□ 1.03
USH1C-207ENST00000527720 PKD2Q13563 968 aa21.46■■□□□ 1.03
USH1C-207ENST00000527720 ERCC6L2Q5T890 1561 aa21.46■■□□□ 1.03
USH1C-207ENST00000527720 CNTLNQ9NXG0 1405 aa21.45■■□□□ 1.02
USH1C-207ENST00000527720 NUP155O75694 1391 aa21.44■■□□□ 1.02
USH1C-207ENST00000527720 PLEKHH2Q8IVE3 1493 aa21.43■■□□□ 1.02
USH1C-207ENST00000527720 HNRNPMP52272 730 aaKnown RBP eCLIP21.43■■□□□ 1.02
USH1C-207ENST00000527720 CCDC7Q96M83 1385 aa21.43■■□□□ 1.02
USH1C-207ENST00000527720 ARHGAP5Q13017 1502 aa21.42■■□□□ 1.02
USH1C-207ENST00000527720 ARHGEF12Q9NZN5 1544 aa21.42■■□□□ 1.02
USH1C-207ENST00000527720 UHRF1BP1LA0JNW5 1464 aa21.42■■□□□ 1.02
USH1C-207ENST00000527720 SYCP2Q9BX26 1530 aa21.41■■□□□ 1.02
USH1C-207ENST00000527720 PLXNC1O60486 1568 aa21.41■■□□□ 1.02
USH1C-207ENST00000527720 SUPT16HQ9Y5B9 1047 aaKnown RBP21.4■■□□□ 1.02
USH1C-207ENST00000527720 ZCCHC11Q5TAX3 1644 aaKnown RBP21.39■■□□□ 1.02
USH1C-207ENST00000527720 UHRF1BP1Q6BDS2 1440 aa21.39■■□□□ 1.02
USH1C-207ENST00000527720 UNC13BO14795 1591 aa21.38■■□□□ 1.01
USH1C-207ENST00000527720 FAM135AQ9P2D6 1515 aa21.36■■□□□ 1.01
USH1C-207ENST00000527720 KDM5CP41229 1560 aa21.34■■□□□ 1.01
USH1C-207ENST00000527720 C11orf95C9JLR9 678 aaPredicted RBP21.33■■□□□ 1.01
USH1C-207ENST00000527720 RALGAPBQ86X10 1494 aa21.33■■□□□ 1.01
USH1C-207ENST00000527720 PLCH2O75038 1416 aa21.3■■□□□ 1
USH1C-207ENST00000527720 IQGAP3Q86VI3 1631 aa21.3■■□□□ 1
USH1C-207ENST00000527720 KIF7Q2M1P5 1343 aa21.3■■□□□ 1
USH1C-207ENST00000527720 ARID4BQ4LE39 1312 aaPredicted RBP21.29■■□□□ 1
USH1C-207ENST00000527720 DUOX2Q9NRD8 1548 aa21.29■■□□□ 1
USH1C-207ENST00000527720 USP47Q96K76 1375 aa21.29■■□□□ 1
USH1C-207ENST00000527720 BCORL1Q5H9F3 1711 aa21.28■■□□□ 1
USH1C-207ENST00000527720 ARAP3Q8WWN8 1544 aa21.27■■□□□ 1
USH1C-207ENST00000527720 ABCC1P33527 1531 aa21.25■□□□□ 0.99
USH1C-207ENST00000527720 MAGI2Q86UL8 1455 aa21.25■□□□□ 0.99
USH1C-207ENST00000527720 ERBINQ96RT1 1412 aa21.25■□□□□ 0.99
USH1C-207ENST00000527720 PRKRIP1Q9H875 184 aaPredicted RBP21.25■□□□□ 0.99
USH1C-207ENST00000527720 EFCAB2Q5VUJ9 269 aa21.22■□□□□ 0.99
USH1C-207ENST00000527720 CCDC144AA2RUR9 1427 aa21.21■□□□□ 0.99
USH1C-207ENST00000527720 ZNF326Q5BKZ1 582 aaKnown RBP21.2■□□□□ 0.98
USH1C-207ENST00000527720 ATP10AO60312 1499 aa21.18■□□□□ 0.98
USH1C-207ENST00000527720 ROCK2O75116 1388 aaKnown RBP21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms