RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 NUP153P49790 1475 aaKnown RBP24.08■■□□□ 1.45
NKX3-1-202ENST00000523261 SAMD9Q5K651 1589 aa24.07■■□□□ 1.44
NKX3-1-202ENST00000523261 HECW1Q76N89 1606 aa24.06■■□□□ 1.44
NKX3-1-202ENST00000523261 CEBPAP49715 358 aaPredicted RBP24.04■■□□□ 1.44
NKX3-1-202ENST00000523261 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.04■■□□□ 1.44
NKX3-1-202ENST00000523261 PTPRTO14522 1441 aa24.01■■□□□ 1.43
NKX3-1-202ENST00000523261 LTBP4Q8N2S1 1624 aa24.01■■□□□ 1.43
NKX3-1-202ENST00000523261 UHRF1BP1Q6BDS2 1440 aa24.01■■□□□ 1.43
NKX3-1-202ENST00000523261 PLEKHD1A6NEE1 506 aa23.99■■□□□ 1.43
NKX3-1-202ENST00000523261 ATP10AO60312 1499 aa23.99■■□□□ 1.43
NKX3-1-202ENST00000523261 IQSEC2Q5JU85 1478 aa23.98■■□□□ 1.43
NKX3-1-202ENST00000523261 SETD1BQ9UPS6 1966 aaKnown RBP23.97■■□□□ 1.43
NKX3-1-202ENST00000523261 C9orf84Q5VXU9 1444 aa23.96■■□□□ 1.43
NKX3-1-202ENST00000523261 SCAPERQ9BY12 1400 aa23.95■■□□□ 1.42
NKX3-1-202ENST00000523261 PLCH2O75038 1416 aa23.86■■□□□ 1.41
NKX3-1-202ENST00000523261 C3P01024 1663 aa23.83■■□□□ 1.4
NKX3-1-202ENST00000523261 NCOA1Q15788 1441 aa23.82■■□□□ 1.4
NKX3-1-202ENST00000523261 TRAPPC8Q9Y2L5 1435 aa23.76■■□□□ 1.39
NKX3-1-202ENST00000523261 ZNF518AQ6AHZ1 1483 aa23.76■■□□□ 1.39
NKX3-1-202ENST00000523261 CDK13Q14004 1512 aaKnown RBP23.75■■□□□ 1.39
NKX3-1-202ENST00000523261 KDM5CP41229 1560 aa23.75■■□□□ 1.39
NKX3-1-202ENST00000523261 UBAP1LF5GYI3 381 aa23.75■■□□□ 1.39
NKX3-1-202ENST00000523261 EFCAB2Q5VUJ9 269 aa23.75■■□□□ 1.39
NKX3-1-202ENST00000523261 REREQ9P2R6 1566 aa23.74■■□□□ 1.39
NKX3-1-202ENST00000523261 DIP2CQ9Y2E4 1556 aa23.74■■□□□ 1.39
NKX3-1-202ENST00000523261 RANGAP1P46060 587 aaPredicted RBP23.74■■□□□ 1.39
NKX3-1-202ENST00000523261 MYO5CQ9NQX4 1742 aa23.73■■□□□ 1.39
NKX3-1-202ENST00000523261 AFAP1Q8N556 730 aa23.71■■□□□ 1.39
NKX3-1-202ENST00000523261 ZNF335Q9H4Z2 1342 aaPredicted RBP23.7■■□□□ 1.38
NKX3-1-202ENST00000523261 CAMSAP1Q5T5Y3 1602 aa23.7■■□□□ 1.38
NKX3-1-202ENST00000523261 AGLP35573 1532 aa23.68■■□□□ 1.38
NKX3-1-202ENST00000523261 ABCA6Q8N139 1617 aa23.67■■□□□ 1.38
NKX3-1-202ENST00000523261 MED1Q15648 1581 aaPredicted RBP23.67■■□□□ 1.38
NKX3-1-202ENST00000523261 CSRNP3Q8WYN3 585 aa23.67■■□□□ 1.38
NKX3-1-202ENST00000523261 ESF1Q9H501 851 aaKnown RBP23.66■■□□□ 1.38
NKX3-1-202ENST00000523261 MYT1LQ9UL68 1186 aa23.63■■□□□ 1.37
NKX3-1-202ENST00000523261 MLH3Q9UHC1 1453 aa23.62■■□□□ 1.37
NKX3-1-202ENST00000523261 NCKAP5LQ9HCH0 1330 aa23.62■■□□□ 1.37
NKX3-1-202ENST00000523261 CNTLNQ9NXG0 1405 aa23.62■■□□□ 1.37
NKX3-1-202ENST00000523261 KIF14Q15058 1648 aa23.61■■□□□ 1.37
NKX3-1-202ENST00000523261 NPATQ14207 1427 aa23.6■■□□□ 1.37
NKX3-1-202ENST00000523261 ARHGAP5Q13017 1502 aa23.6■■□□□ 1.37
NKX3-1-202ENST00000523261 HSPA1LP34931 641 aa23.58■■□□□ 1.37
NKX3-1-202ENST00000523261 MROH2AA6NES4 1674 aa23.55■■□□□ 1.36
NKX3-1-202ENST00000523261 PLA2R1Q13018 1463 aa23.55■■□□□ 1.36
NKX3-1-202ENST00000523261 PKD2Q13563 968 aa23.53■■□□□ 1.36
NKX3-1-202ENST00000523261 TCOF1Q13428 1488 aaKnown RBP23.52■■□□□ 1.36
NKX3-1-202ENST00000523261 ZNF142P52746 1687 aaPredicted RBP23.51■■□□□ 1.35
NKX3-1-202ENST00000523261 CDK11AQ9UQ88 783 aaPredicted RBP23.5■■□□□ 1.35
NKX3-1-202ENST00000523261 ZMYM3Q14202 1370 aa23.5■■□□□ 1.35
NKX3-1-202ENST00000523261 CDC42BPBQ9Y5S2 1711 aa23.5■■□□□ 1.35
NKX3-1-202ENST00000523261 KIDINS220Q9ULH0 1771 aa23.5■■□□□ 1.35
NKX3-1-202ENST00000523261 TROQ12816 1431 aaPredicted RBP23.5■■□□□ 1.35
NKX3-1-202ENST00000523261 SCAF1Q9H7N4 1312 aaKnown RBP23.49■■□□□ 1.35
NKX3-1-202ENST00000523261 ABCC1P33527 1531 aa23.48■■□□□ 1.35
NKX3-1-202ENST00000523261 MYO3AQ8NEV4 1616 aa23.48■■□□□ 1.35
NKX3-1-202ENST00000523261 PIP4K2BP78356 416 aa23.47■■□□□ 1.35
NKX3-1-202ENST00000523261 ATP1B4Q9UN42 357 aaPredicted RBP23.47■■□□□ 1.35
NKX3-1-202ENST00000523261 SUPT6HQ7KZ85 1726 aaKnown RBP23.46■■□□□ 1.35
NKX3-1-202ENST00000523261 CEP170BQ9Y4F5 1589 aaPredicted RBP23.46■■□□□ 1.35
NKX3-1-202ENST00000523261 ITSN2Q9NZM3 1697 aa23.45■■□□□ 1.34
NKX3-1-202ENST00000523261 PPP6R1Q9UPN7 881 aa23.45■■□□□ 1.34
NKX3-1-202ENST00000523261 PHF23Q9BUL5 403 aaPredicted RBP23.43■■□□□ 1.34
NKX3-1-202ENST00000523261 CLIP1P30622 1438 aa23.42■■□□□ 1.34
NKX3-1-202ENST00000523261 TOM1O60784 492 aa23.42■■□□□ 1.34
NKX3-1-202ENST00000523261 FMN1Q68DA7 1419 aa23.42■■□□□ 1.34
NKX3-1-202ENST00000523261 PREX2Q70Z35 1606 aa23.41■■□□□ 1.34
NKX3-1-202ENST00000523261 EEA1Q15075 1411 aa23.4■■□□□ 1.34
NKX3-1-202ENST00000523261 PTPRKQ15262 1439 aa23.4■■□□□ 1.34
NKX3-1-202ENST00000523261 CLTCQ00610 1675 aaKnown RBP23.39■■□□□ 1.34
NKX3-1-202ENST00000523261 CPS1P31327 1500 aa23.38■■□□□ 1.33
NKX3-1-202ENST00000523261 SAMD9LQ8IVG5 1584 aa23.35■■□□□ 1.33
NKX3-1-202ENST00000523261 LRRIQ1Q96JM4 1722 aa23.34■■□□□ 1.33
NKX3-1-202ENST00000523261 SHANK2Q9UPX8 1470 aa23.33■■□□□ 1.33
NKX3-1-202ENST00000523261 ALKQ9UM73 1620 aa23.33■■□□□ 1.32
NKX3-1-202ENST00000523261 A2ML1A8K2U0 1454 aa23.31■■□□□ 1.32
NKX3-1-202ENST00000523261 ARHGAP35Q9NRY4 1499 aa23.3■■□□□ 1.32
NKX3-1-202ENST00000523261 DNMT1P26358 1616 aaKnown RBP23.3■■□□□ 1.32
NKX3-1-202ENST00000523261 NEURL4Q96JN8 1562 aa23.3■■□□□ 1.32
NKX3-1-202ENST00000523261 PLXNC1O60486 1568 aa23.29■■□□□ 1.32
NKX3-1-202ENST00000523261 POLR1AO95602 1720 aaPredicted RBP23.28■■□□□ 1.32
NKX3-1-202ENST00000523261 CDC42BPAQ5VT25 1732 aa23.28■■□□□ 1.32
NKX3-1-202ENST00000523261 SPAG9O60271 1321 aaKnown RBP23.26■■□□□ 1.31
NKX3-1-202ENST00000523261 ATP7AQ04656 1500 aa23.23■■□□□ 1.31
NKX3-1-202ENST00000523261 SYCP2Q9BX26 1530 aa23.23■■□□□ 1.31
NKX3-1-202ENST00000523261 VWDEQ8N2E2 1590 aa23.23■■□□□ 1.31
NKX3-1-202ENST00000523261 A2MP01023 1474 aa23.23■■□□□ 1.31
NKX3-1-202ENST00000523261 GGT6Q6P531 493 aa23.22■■□□□ 1.31
NKX3-1-202ENST00000523261 RGS17Q9UGC6 210 aaPredicted RBP23.22■■□□□ 1.31
NKX3-1-202ENST00000523261 INO80Q9ULG1 1556 aaPredicted RBP23.21■■□□□ 1.31
NKX3-1-202ENST00000523261 ZNF777Q9ULD5 760 aaPredicted RBP23.18■■□□□ 1.3
NKX3-1-202ENST00000523261 HNRNPMP52272 730 aaKnown RBP eCLIP23.17■■□□□ 1.3
NKX3-1-202ENST00000523261 SENP3Q9H4L4 574 aaPredicted RBP23.16■■□□□ 1.3
NKX3-1-202ENST00000523261 CCDC18Q5T9S5 1454 aa23.14■■□□□ 1.29
NKX3-1-202ENST00000523261 TNRQ92752 1358 aa23.14■■□□□ 1.29
NKX3-1-202ENST00000523261 UBTFP17480 764 aaKnown RBP23.13■■□□□ 1.29
NKX3-1-202ENST00000523261 ANKLE2Q86XL3 938 aa23.13■■□□□ 1.29
NKX3-1-202ENST00000523261 KIAA1107Q9UPP5 1409 aa23.12■■□□□ 1.29
NKX3-1-202ENST00000523261 GPATCH8Q9UKJ3 1502 aaKnown RBP23.12■■□□□ 1.29
NKX3-1-202ENST00000523261 MED14O60244 1454 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms