RNA–Protein interactions for RNA: ENST00000522227.5

CTNNA1-234, Transcript of catenin alpha 1, humanhuman

TSL 3

Gene CTNNA1, Length 642 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-234ENST00000522227 PTPRTO14522 1441 aa19.12■□□□□ 0.65
CTNNA1-234ENST00000522227 PLEKHD1A6NEE1 506 aa19.12■□□□□ 0.65
CTNNA1-234ENST00000522227 RANGAP1P46060 587 aaPredicted RBP19.12■□□□□ 0.65
CTNNA1-234ENST00000522227 LTBP4Q8N2S1 1624 aa19.11■□□□□ 0.65
CTNNA1-234ENST00000522227 CFAP74Q9C0B2 1584 aa19.1■□□□□ 0.65
CTNNA1-234ENST00000522227 UBAP1LF5GYI3 381 aa19.1■□□□□ 0.65
CTNNA1-234ENST00000522227 MAGI2Q86UL8 1455 aa19.09■□□□□ 0.65
CTNNA1-234ENST00000522227 NUP153P49790 1475 aaKnown RBP19.08■□□□□ 0.64
CTNNA1-234ENST00000522227 SCAPERQ9BY12 1400 aa19.08■□□□□ 0.64
CTNNA1-234ENST00000522227 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.07■□□□□ 0.646e-6■■■■■ 38.2
CTNNA1-234ENST00000522227 ATP10AO60312 1499 aa19.07■□□□□ 0.64
CTNNA1-234ENST00000522227 C9orf84Q5VXU9 1444 aa19.06■□□□□ 0.64
CTNNA1-234ENST00000522227 MYT1LQ9UL68 1186 aa19.05■□□□□ 0.64
CTNNA1-234ENST00000522227 IQSEC2Q5JU85 1478 aa19.03■□□□□ 0.64
CTNNA1-234ENST00000522227 PRXQ9BXM0 1461 aa19.03■□□□□ 0.64
CTNNA1-234ENST00000522227 SCAF1Q9H7N4 1312 aaKnown RBP19.01■□□□□ 0.63
CTNNA1-234ENST00000522227 SETD1BQ9UPS6 1966 aaKnown RBP19.01■□□□□ 0.63
CTNNA1-234ENST00000522227 ZNF335Q9H4Z2 1342 aaPredicted RBP19■□□□□ 0.63
CTNNA1-234ENST00000522227 SAMD9Q5K651 1589 aa18.98■□□□□ 0.63
CTNNA1-234ENST00000522227 ESF1Q9H501 851 aaKnown RBP18.98■□□□□ 0.63
CTNNA1-234ENST00000522227 NCKAP5LQ9HCH0 1330 aa18.97■□□□□ 0.63
CTNNA1-234ENST00000522227 NCOA1Q15788 1441 aa18.96■□□□□ 0.63
CTNNA1-234ENST00000522227 MED1Q15648 1581 aaPredicted RBP18.96■□□□□ 0.63
CTNNA1-234ENST00000522227 C3P01024 1663 aa18.95■□□□□ 0.62
CTNNA1-234ENST00000522227 PIP4K2BP78356 416 aa18.95■□□□□ 0.62
CTNNA1-234ENST00000522227 HSPA1LP34931 641 aa18.94■□□□□ 0.62
CTNNA1-234ENST00000522227 PHF23Q9BUL5 403 aaPredicted RBP18.93■□□□□ 0.62
CTNNA1-234ENST00000522227 PLCH2O75038 1416 aa18.92■□□□□ 0.62
CTNNA1-234ENST00000522227 AFAP1Q8N556 730 aa18.92■□□□□ 0.62
CTNNA1-234ENST00000522227 TRAPPC8Q9Y2L5 1435 aa18.91■□□□□ 0.62
CTNNA1-234ENST00000522227 CAMSAP1Q5T5Y3 1602 aa18.91■□□□□ 0.62
CTNNA1-234ENST00000522227 EFCAB2Q5VUJ9 269 aa18.9■□□□□ 0.62
CTNNA1-234ENST00000522227 CDK13Q14004 1512 aaKnown RBP18.89■□□□□ 0.61
CTNNA1-234ENST00000522227 ATP1B4Q9UN42 357 aaPredicted RBP18.87■□□□□ 0.61
CTNNA1-234ENST00000522227 SENP3Q9H4L4 574 aaPredicted RBP18.86■□□□□ 0.61
CTNNA1-234ENST00000522227 DIP2CQ9Y2E4 1556 aa18.84■□□□□ 0.61
CTNNA1-234ENST00000522227 ZNF518AQ6AHZ1 1483 aa18.84■□□□□ 0.61
CTNNA1-234ENST00000522227 ABCA6Q8N139 1617 aa18.8■□□□□ 0.6
CTNNA1-234ENST00000522227 MYO5CQ9NQX4 1742 aa18.8■□□□□ 0.6
CTNNA1-234ENST00000522227 ARHGAP5Q13017 1502 aa18.79■□□□□ 0.6
CTNNA1-234ENST00000522227 KDM5CP41229 1560 aa18.77■□□□□ 0.6
CTNNA1-234ENST00000522227 TOM1O60784 492 aa18.77■□□□□ 0.6
CTNNA1-234ENST00000522227 PPP6R1Q9UPN7 881 aa18.77■□□□□ 0.6
CTNNA1-234ENST00000522227 CSRNP3Q8WYN3 585 aa18.76■□□□□ 0.59
CTNNA1-234ENST00000522227 PKD2Q13563 968 aa18.75■□□□□ 0.59
CTNNA1-234ENST00000522227 CNTLNQ9NXG0 1405 aa18.74■□□□□ 0.59
CTNNA1-234ENST00000522227 REREQ9P2R6 1566 aa18.74■□□□□ 0.59
CTNNA1-234ENST00000522227 AGLP35573 1532 aa18.74■□□□□ 0.59
CTNNA1-234ENST00000522227 KIF14Q15058 1648 aa18.73■□□□□ 0.59
CTNNA1-234ENST00000522227 ZMYM3Q14202 1370 aa18.72■□□□□ 0.59
CTNNA1-234ENST00000522227 SUPT6HQ7KZ85 1726 aaKnown RBP18.71■□□□□ 0.59
CTNNA1-234ENST00000522227 NPATQ14207 1427 aa18.71■□□□□ 0.59
CTNNA1-234ENST00000522227 MLH3Q9UHC1 1453 aa18.7■□□□□ 0.58
CTNNA1-234ENST00000522227 PLA2R1Q13018 1463 aa18.68■□□□□ 0.58
CTNNA1-234ENST00000522227 TCOF1Q13428 1488 aaKnown RBP18.67■□□□□ 0.58
CTNNA1-234ENST00000522227 CDK11AQ9UQ88 783 aaPredicted RBP18.67■□□□□ 0.58
CTNNA1-234ENST00000522227 MYO3AQ8NEV4 1616 aa18.67■□□□□ 0.58
CTNNA1-234ENST00000522227 CEP170BQ9Y4F5 1589 aaPredicted RBP18.65■□□□□ 0.58
CTNNA1-234ENST00000522227 MROH2AA6NES4 1674 aa18.63■□□□□ 0.57
CTNNA1-234ENST00000522227 EHMT2Q96KQ7 1210 aa18.63■□□□□ 0.57
CTNNA1-234ENST00000522227 ZNF142P52746 1687 aaPredicted RBP18.63■□□□□ 0.57
CTNNA1-234ENST00000522227 RGS17Q9UGC6 210 aaPredicted RBP18.62■□□□□ 0.57
CTNNA1-234ENST00000522227 CLTCQ00610 1675 aaKnown RBP18.62■□□□□ 0.57
CTNNA1-234ENST00000522227 KIDINS220Q9ULH0 1771 aa18.62■□□□□ 0.57
CTNNA1-234ENST00000522227 CDC42BPBQ9Y5S2 1711 aa18.6■□□□□ 0.57
CTNNA1-234ENST00000522227 SHANK2Q9UPX8 1470 aa18.6■□□□□ 0.57
CTNNA1-234ENST00000522227 TROQ12816 1431 aaPredicted RBP18.6■□□□□ 0.57
CTNNA1-234ENST00000522227 PTPRKQ15262 1439 aa18.6■□□□□ 0.57
CTNNA1-234ENST00000522227 GGT6Q6P531 493 aa18.6■□□□□ 0.57
CTNNA1-234ENST00000522227 CPS1P31327 1500 aa18.59■□□□□ 0.57
CTNNA1-234ENST00000522227 CLIP1P30622 1438 aa18.59■□□□□ 0.57
CTNNA1-234ENST00000522227 ABCC1P33527 1531 aa18.59■□□□□ 0.57
CTNNA1-234ENST00000522227 ITSN2Q9NZM3 1697 aa18.58■□□□□ 0.57
CTNNA1-234ENST00000522227 ZNF777Q9ULD5 760 aaPredicted RBP18.58■□□□□ 0.56
CTNNA1-234ENST00000522227 ALKQ9UM73 1620 aa18.56■□□□□ 0.56
CTNNA1-234ENST00000522227 SPAG9O60271 1321 aaKnown RBP18.53■□□□□ 0.56
CTNNA1-234ENST00000522227 DNMT1P26358 1616 aaKnown RBP18.52■□□□□ 0.56
CTNNA1-234ENST00000522227 A2ML1A8K2U0 1454 aa18.52■□□□□ 0.56
CTNNA1-234ENST00000522227 PREX2Q70Z35 1606 aa18.52■□□□□ 0.55
CTNNA1-234ENST00000522227 SAMD9LQ8IVG5 1584 aa18.51■□□□□ 0.55
CTNNA1-234ENST00000522227 NEURL4Q96JN8 1562 aa18.51■□□□□ 0.55
CTNNA1-234ENST00000522227 HNRNPMP52272 730 aaKnown RBP eCLIP18.51■□□□□ 0.557e-14■■■■■ 45.2
CTNNA1-234ENST00000522227 POTEAQ6S8J7 498 aa18.51■□□□□ 0.55
CTNNA1-234ENST00000522227 FMN1Q68DA7 1419 aa18.5■□□□□ 0.55
CTNNA1-234ENST00000522227 POLR1AO95602 1720 aaPredicted RBP18.5■□□□□ 0.55
CTNNA1-234ENST00000522227 ANKLE2Q86XL3 938 aa18.48■□□□□ 0.55
CTNNA1-234ENST00000522227 VWDEQ8N2E2 1590 aa18.47■□□□□ 0.55
CTNNA1-234ENST00000522227 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.47■□□□□ 0.55
CTNNA1-234ENST00000522227 FBXO31Q5XUX0 539 aaPredicted RBP18.47■□□□□ 0.55
CTNNA1-234ENST00000522227 A2MP01023 1474 aa18.46■□□□□ 0.54
CTNNA1-234ENST00000522227 SYCP2Q9BX26 1530 aa18.45■□□□□ 0.54
CTNNA1-234ENST00000522227 LRRIQ1Q96JM4 1722 aa18.45■□□□□ 0.54
CTNNA1-234ENST00000522227 UBTFP17480 764 aaKnown RBP18.44■□□□□ 0.54
CTNNA1-234ENST00000522227 TNRQ92752 1358 aa18.43■□□□□ 0.54
CTNNA1-234ENST00000522227 ATP7AQ04656 1500 aa18.43■□□□□ 0.54
CTNNA1-234ENST00000522227 NPHP4O75161 1426 aaPredicted RBP18.42■□□□□ 0.54
CTNNA1-234ENST00000522227 ARHGAP35Q9NRY4 1499 aa18.41■□□□□ 0.54
CTNNA1-234ENST00000522227 SETD1AO15047 1707 aaKnown RBP18.41■□□□□ 0.54
CTNNA1-234ENST00000522227 CDC42BPAQ5VT25 1732 aa18.41■□□□□ 0.54
CTNNA1-234ENST00000522227 LRRC7Q96NW7 1537 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms