RNA–Protein interactions for RNA: ENST00000517660.1

PDGFRB-203, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 3

Gene PDGFRB, Length 611 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-203ENST00000517660 PTPRTO14522 1441 aa17.49■□□□□ 0.39
PDGFRB-203ENST00000517660 DMRT2Q9Y5R5 561 aa17.49■□□□□ 0.39
PDGFRB-203ENST00000517660 HECW1Q76N89 1606 aa17.48■□□□□ 0.39
PDGFRB-203ENST00000517660 IQSEC2Q5JU85 1478 aa17.47■□□□□ 0.39
PDGFRB-203ENST00000517660 MAGI2Q86UL8 1455 aa17.47■□□□□ 0.39
PDGFRB-203ENST00000517660 NUP153P49790 1475 aaKnown RBP17.46■□□□□ 0.39
PDGFRB-203ENST00000517660 RAPGEF6Q8TEU7 1601 aa17.46■□□□□ 0.39
PDGFRB-203ENST00000517660 UBTFP17480 764 aaKnown RBP17.45■□□□□ 0.38
PDGFRB-203ENST00000517660 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.44■□□□□ 0.38
PDGFRB-203ENST00000517660 UHRF1BP1Q6BDS2 1440 aa17.44■□□□□ 0.38
PDGFRB-203ENST00000517660 SAMD9Q5K651 1589 aa17.44■□□□□ 0.38
PDGFRB-203ENST00000517660 CFAP74Q9C0B2 1584 aa17.42■□□□□ 0.38
PDGFRB-203ENST00000517660 EHMT2Q96KQ7 1210 aa17.42■□□□□ 0.38
PDGFRB-203ENST00000517660 ATP10AO60312 1499 aa17.4■□□□□ 0.38
PDGFRB-203ENST00000517660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.4■□□□□ 0.38
PDGFRB-203ENST00000517660 HNRNPUL2Q1KMD3 747 aaKnown RBP17.4■□□□□ 0.38
PDGFRB-203ENST00000517660 C9orf84Q5VXU9 1444 aa17.38■□□□□ 0.37
PDGFRB-203ENST00000517660 NCOA1Q15788 1441 aa17.36■□□□□ 0.37
PDGFRB-203ENST00000517660 SCAPERQ9BY12 1400 aa17.36■□□□□ 0.37
PDGFRB-203ENST00000517660 MED1Q15648 1581 aaPredicted RBP17.34■□□□□ 0.37
PDGFRB-203ENST00000517660 PLEKHD1A6NEE1 506 aa17.33■□□□□ 0.36
PDGFRB-203ENST00000517660 C3P01024 1663 aa17.32■□□□□ 0.36
PDGFRB-203ENST00000517660 UBAP1LF5GYI3 381 aa17.3■□□□□ 0.36
PDGFRB-203ENST00000517660 ZNF335Q9H4Z2 1342 aaPredicted RBP17.29■□□□□ 0.36
PDGFRB-203ENST00000517660 PLCH2O75038 1416 aa17.29■□□□□ 0.36
PDGFRB-203ENST00000517660 SETD1BQ9UPS6 1966 aaKnown RBP17.28■□□□□ 0.36
PDGFRB-203ENST00000517660 TRAPPC8Q9Y2L5 1435 aa17.26■□□□□ 0.35
PDGFRB-203ENST00000517660 DIP2CQ9Y2E4 1556 aa17.25■□□□□ 0.35
PDGFRB-203ENST00000517660 ATP1B4Q9UN42 357 aaPredicted RBP17.25■□□□□ 0.35
PDGFRB-203ENST00000517660 FMN1Q68DA7 1419 aa17.24■□□□□ 0.35
PDGFRB-203ENST00000517660 CAMSAP1Q5T5Y3 1602 aa17.24■□□□□ 0.35
PDGFRB-203ENST00000517660 ARHGAP35Q9NRY4 1499 aa17.24■□□□□ 0.35
PDGFRB-203ENST00000517660 KDM5CP41229 1560 aa17.23■□□□□ 0.35
PDGFRB-203ENST00000517660 HSPA1LP34931 641 aa17.23■□□□□ 0.35
PDGFRB-203ENST00000517660 REREQ9P2R6 1566 aa17.23■□□□□ 0.35
PDGFRB-203ENST00000517660 NCKAP5LQ9HCH0 1330 aa17.21■□□□□ 0.35
PDGFRB-203ENST00000517660 CDK13Q14004 1512 aaKnown RBP17.21■□□□□ 0.34
PDGFRB-203ENST00000517660 AFAP1Q8N556 730 aa17.2■□□□□ 0.34
PDGFRB-203ENST00000517660 CDK11AQ9UQ88 783 aaPredicted RBP17.2■□□□□ 0.34
PDGFRB-203ENST00000517660 ABCA6Q8N139 1617 aa17.2■□□□□ 0.34
PDGFRB-203ENST00000517660 ZNF518AQ6AHZ1 1483 aa17.19■□□□□ 0.34
PDGFRB-203ENST00000517660 AGLP35573 1532 aa17.17■□□□□ 0.34
PDGFRB-203ENST00000517660 TCOF1Q13428 1488 aaKnown RBP17.14■□□□□ 0.33
PDGFRB-203ENST00000517660 EFCAB2Q5VUJ9 269 aa17.14■□□□□ 0.33
PDGFRB-203ENST00000517660 NPATQ14207 1427 aa17.13■□□□□ 0.33
PDGFRB-203ENST00000517660 MLH3Q9UHC1 1453 aa17.12■□□□□ 0.33
PDGFRB-203ENST00000517660 MYO5CQ9NQX4 1742 aa17.12■□□□□ 0.33
PDGFRB-203ENST00000517660 PLA2R1Q13018 1463 aa17.12■□□□□ 0.33
PDGFRB-203ENST00000517660 ALKQ9UM73 1620 aa17.11■□□□□ 0.33
PDGFRB-203ENST00000517660 KIF14Q15058 1648 aa17.1■□□□□ 0.33
PDGFRB-203ENST00000517660 PIP4K2BP78356 416 aa17.1■□□□□ 0.33
PDGFRB-203ENST00000517660 CNTLNQ9NXG0 1405 aa17.09■□□□□ 0.33
PDGFRB-203ENST00000517660 ZNF142P52746 1687 aaPredicted RBP17.08■□□□□ 0.32
PDGFRB-203ENST00000517660 CLIP1P30622 1438 aa17.08■□□□□ 0.32
PDGFRB-203ENST00000517660 CASKIN1Q8WXD9 1431 aa17.07■□□□□ 0.32
PDGFRB-203ENST00000517660 MYO3AQ8NEV4 1616 aa17.07■□□□□ 0.32
PDGFRB-203ENST00000517660 TROQ12816 1431 aaPredicted RBP17.06■□□□□ 0.32
PDGFRB-203ENST00000517660 SCAF1Q9H7N4 1312 aaKnown RBP17.06■□□□□ 0.32
PDGFRB-203ENST00000517660 PKD2Q13563 968 aa17.06■□□□□ 0.32
PDGFRB-203ENST00000517660 MROH2AA6NES4 1674 aa17.06■□□□□ 0.32
PDGFRB-203ENST00000517660 ARHGAP5Q13017 1502 aa17.06■□□□□ 0.32
PDGFRB-203ENST00000517660 ZMYM3Q14202 1370 aa17.05■□□□□ 0.32
PDGFRB-203ENST00000517660 RGS17Q9UGC6 210 aaPredicted RBP17.05■□□□□ 0.32
PDGFRB-203ENST00000517660 CEP170BQ9Y4F5 1589 aaPredicted RBP17.04■□□□□ 0.32
PDGFRB-203ENST00000517660 PHF23Q9BUL5 403 aaPredicted RBP17.04■□□□□ 0.32
PDGFRB-203ENST00000517660 ESF1Q9H501 851 aaKnown RBP17.04■□□□□ 0.32
PDGFRB-203ENST00000517660 KIDINS220Q9ULH0 1771 aa17.03■□□□□ 0.32
PDGFRB-203ENST00000517660 PPP6R1Q9UPN7 881 aa17.02■□□□□ 0.32
PDGFRB-203ENST00000517660 PTPRKQ15262 1439 aa17.02■□□□□ 0.31
PDGFRB-203ENST00000517660 ABCC1P33527 1531 aa17.01■□□□□ 0.31
PDGFRB-203ENST00000517660 MYT1LQ9UL68 1186 aa17.01■□□□□ 0.31
PDGFRB-203ENST00000517660 CCDC18Q5T9S5 1454 aa17■□□□□ 0.31
PDGFRB-203ENST00000517660 CDC42BPBQ9Y5S2 1711 aa16.99■□□□□ 0.31
PDGFRB-203ENST00000517660 NEURL4Q96JN8 1562 aa16.99■□□□□ 0.31
PDGFRB-203ENST00000517660 TOM1O60784 492 aa16.99■□□□□ 0.31
PDGFRB-203ENST00000517660 CPS1P31327 1500 aa16.99■□□□□ 0.31
PDGFRB-203ENST00000517660 FYCO1Q9BQS8 1478 aa16.98■□□□□ 0.31
PDGFRB-203ENST00000517660 SHANK2Q9UPX8 1470 aa16.98■□□□□ 0.31
PDGFRB-203ENST00000517660 ITSN2Q9NZM3 1697 aa16.97■□□□□ 0.31
PDGFRB-203ENST00000517660 CLTCQ00610 1675 aaKnown RBP16.96■□□□□ 0.31
PDGFRB-203ENST00000517660 VWDEQ8N2E2 1590 aa16.95■□□□□ 0.3
PDGFRB-203ENST00000517660 SUPT6HQ7KZ85 1726 aaKnown RBP16.95■□□□□ 0.3
PDGFRB-203ENST00000517660 DNMT1P26358 1616 aaKnown RBP16.94■□□□□ 0.3
PDGFRB-203ENST00000517660 PREX2Q70Z35 1606 aa16.92■□□□□ 0.3
PDGFRB-203ENST00000517660 SAMD9LQ8IVG5 1584 aa16.92■□□□□ 0.3
PDGFRB-203ENST00000517660 A2ML1A8K2U0 1454 aa16.92■□□□□ 0.3
PDGFRB-203ENST00000517660 PLXNC1O60486 1568 aa16.91■□□□□ 0.3
PDGFRB-203ENST00000517660 CEP162Q5TB80 1403 aa16.91■□□□□ 0.3
PDGFRB-203ENST00000517660 LOC105371045A0A1W2PR82 267 aa16.91■□□□□ 0.3
PDGFRB-203ENST00000517660 SENP3Q9H4L4 574 aaPredicted RBP16.89■□□□□ 0.29
PDGFRB-203ENST00000517660 LRRIQ1Q96JM4 1722 aa16.89■□□□□ 0.29
PDGFRB-203ENST00000517660 POLR1AO95602 1720 aaPredicted RBP16.87■□□□□ 0.29
PDGFRB-203ENST00000517660 POTEAQ6S8J7 498 aa16.87■□□□□ 0.29
PDGFRB-203ENST00000517660 ZNF777Q9ULD5 760 aaPredicted RBP16.86■□□□□ 0.29
PDGFRB-203ENST00000517660 MTUS2Q5JR59 1369 aa16.86■□□□□ 0.29
PDGFRB-203ENST00000517660 CFDP1Q9UEE9 299 aaPredicted RBP16.84■□□□□ 0.29
PDGFRB-203ENST00000517660 STRCP1A6NGW2 1772 aa16.84■□□□□ 0.29
PDGFRB-203ENST00000517660 CCNB3Q8WWL7 1395 aa16.83■□□□□ 0.28
PDGFRB-203ENST00000517660 LRRC7Q96NW7 1537 aa16.83■□□□□ 0.28
PDGFRB-203ENST00000517660 GPATCH8Q9UKJ3 1502 aaKnown RBP16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms