RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 SAMD9Q5K651 1589 aa18.96■□□□□ 0.63
LIMCH1-221ENST00000515785 EFCAB5A4FU69 1503 aa18.94■□□□□ 0.62
LIMCH1-221ENST00000515785 CFAP74Q9C0B2 1584 aa18.93■□□□□ 0.62
LIMCH1-221ENST00000515785 HECW1Q76N89 1606 aa18.92■□□□□ 0.62
LIMCH1-221ENST00000515785 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.92■□□□□ 0.62
LIMCH1-221ENST00000515785 DMRT2Q9Y5R5 561 aa18.92■□□□□ 0.62
LIMCH1-221ENST00000515785 ZMYM4Q5VZL5 1548 aa18.91■□□□□ 0.62
LIMCH1-221ENST00000515785 TTC37Q6PGP7 1564 aa18.91■□□□□ 0.62
LIMCH1-221ENST00000515785 PREX1Q8TCU6 1659 aa18.91■□□□□ 0.62
LIMCH1-221ENST00000515785 STRCQ7RTU9 1775 aa18.9■□□□□ 0.62
LIMCH1-221ENST00000515785 SCAPERQ9BY12 1400 aa18.89■□□□□ 0.61
LIMCH1-221ENST00000515785 MAGI2Q86UL8 1455 aa18.89■□□□□ 0.61
LIMCH1-221ENST00000515785 SPATA31D1Q6ZQQ2 1576 aa18.88■□□□□ 0.61
LIMCH1-221ENST00000515785 CSRNP3Q8WYN3 585 aa18.87■□□□□ 0.61
LIMCH1-221ENST00000515785 ATP10AO60312 1499 aa18.86■□□□□ 0.61
LIMCH1-221ENST00000515785 ARHGEF12Q9NZN5 1544 aa18.85■□□□□ 0.61
LIMCH1-221ENST00000515785 PIAS4Q8N2W9 510 aaPredicted RBP18.85■□□□□ 0.61
LIMCH1-221ENST00000515785 MYT1LQ9UL68 1186 aa18.84■□□□□ 0.61
LIMCH1-221ENST00000515785 ATP1B4Q9UN42 357 aaPredicted RBP18.81■□□□□ 0.6
LIMCH1-221ENST00000515785 C9orf84Q5VXU9 1444 aa18.81■□□□□ 0.6
LIMCH1-221ENST00000515785 UHRF1BP1Q6BDS2 1440 aa18.81■□□□□ 0.6
LIMCH1-221ENST00000515785 PLCH2O75038 1416 aa18.8■□□□□ 0.6
LIMCH1-221ENST00000515785 EFCAB2Q5VUJ9 269 aa18.79■□□□□ 0.6
LIMCH1-221ENST00000515785 CDK13Q14004 1512 aaKnown RBP18.79■□□□□ 0.6
LIMCH1-221ENST00000515785 SETD1BQ9UPS6 1966 aaKnown RBP18.78■□□□□ 0.6
LIMCH1-221ENST00000515785 AFAP1Q8N556 730 aa18.76■□□□□ 0.59
LIMCH1-221ENST00000515785 PTPRTO14522 1441 aa18.75■□□□□ 0.59
LIMCH1-221ENST00000515785 ESF1Q9H501 851 aaKnown RBP18.73■□□□□ 0.59
LIMCH1-221ENST00000515785 LTBP4Q8N2S1 1624 aa18.71■□□□□ 0.59
LIMCH1-221ENST00000515785 C3P01024 1663 aa18.71■□□□□ 0.59
LIMCH1-221ENST00000515785 MYO5CQ9NQX4 1742 aa18.71■□□□□ 0.59
LIMCH1-221ENST00000515785 EHMT2Q96KQ7 1210 aa18.68■□□□□ 0.58
LIMCH1-221ENST00000515785 UBAP1LF5GYI3 381 aa18.67■□□□□ 0.58
LIMCH1-221ENST00000515785 ZNF518AQ6AHZ1 1483 aa18.66■□□□□ 0.58
LIMCH1-221ENST00000515785 KIF14Q15058 1648 aa18.65■□□□□ 0.58
LIMCH1-221ENST00000515785 NCKAP5LQ9HCH0 1330 aa18.65■□□□□ 0.58
LIMCH1-221ENST00000515785 TRAPPC8Q9Y2L5 1435 aa18.65■□□□□ 0.58
LIMCH1-221ENST00000515785 ARHGAP5Q13017 1502 aa18.64■□□□□ 0.58
LIMCH1-221ENST00000515785 DIP2CQ9Y2E4 1556 aa18.64■□□□□ 0.58
LIMCH1-221ENST00000515785 CDK11AQ9UQ88 783 aaPredicted RBP18.64■□□□□ 0.57
LIMCH1-221ENST00000515785 NCOA1Q15788 1441 aa18.62■□□□□ 0.57
LIMCH1-221ENST00000515785 IQSEC2Q5JU85 1478 aa18.62■□□□□ 0.57
LIMCH1-221ENST00000515785 ABCA6Q8N139 1617 aa18.61■□□□□ 0.57
LIMCH1-221ENST00000515785 KDM5CP41229 1560 aa18.61■□□□□ 0.57
LIMCH1-221ENST00000515785 ZNF335Q9H4Z2 1342 aaPredicted RBP18.61■□□□□ 0.57
LIMCH1-221ENST00000515785 CAMSAP1Q5T5Y3 1602 aa18.6■□□□□ 0.57
LIMCH1-221ENST00000515785 REREQ9P2R6 1566 aa18.56■□□□□ 0.56
LIMCH1-221ENST00000515785 MLH3Q9UHC1 1453 aa18.56■□□□□ 0.56
LIMCH1-221ENST00000515785 CDC42BPBQ9Y5S2 1711 aa18.55■□□□□ 0.56
LIMCH1-221ENST00000515785 TROQ12816 1431 aaPredicted RBP18.55■□□□□ 0.56
LIMCH1-221ENST00000515785 EEA1Q15075 1411 aa18.55■□□□□ 0.56
LIMCH1-221ENST00000515785 SCAF1Q9H7N4 1312 aaKnown RBP18.54■□□□□ 0.56
LIMCH1-221ENST00000515785 UBTFP17480 764 aaKnown RBP18.54■□□□□ 0.56
LIMCH1-221ENST00000515785 AGLP35573 1532 aa18.54■□□□□ 0.56
LIMCH1-221ENST00000515785 CLIP1P30622 1438 aa18.52■□□□□ 0.56
LIMCH1-221ENST00000515785 FMN1Q68DA7 1419 aa18.52■□□□□ 0.56
LIMCH1-221ENST00000515785 CNTLNQ9NXG0 1405 aa18.52■□□□□ 0.56
LIMCH1-221ENST00000515785 ZMYM3Q14202 1370 aa18.52■□□□□ 0.55
LIMCH1-221ENST00000515785 PIP4K2BP78356 416 aa18.51■□□□□ 0.55
LIMCH1-221ENST00000515785 HSPA1LP34931 641 aa18.5■□□□□ 0.55
LIMCH1-221ENST00000515785 KIDINS220Q9ULH0 1771 aa18.5■□□□□ 0.55
LIMCH1-221ENST00000515785 ZNF777Q9ULD5 760 aaPredicted RBP18.49■□□□□ 0.55
LIMCH1-221ENST00000515785 LRRIQ1Q96JM4 1722 aa18.49■□□□□ 0.55
LIMCH1-221ENST00000515785 ITSN2Q9NZM3 1697 aa18.48■□□□□ 0.55
LIMCH1-221ENST00000515785 SUPT6HQ7KZ85 1726 aaKnown RBP18.48■□□□□ 0.55
LIMCH1-221ENST00000515785 NPATQ14207 1427 aa18.48■□□□□ 0.55
LIMCH1-221ENST00000515785 PKD2Q13563 968 aa18.47■□□□□ 0.55
LIMCH1-221ENST00000515785 ABCC1P33527 1531 aa18.47■□□□□ 0.55
LIMCH1-221ENST00000515785 ARHGAP35Q9NRY4 1499 aa18.46■□□□□ 0.54
LIMCH1-221ENST00000515785 MROH2AA6NES4 1674 aa18.45■□□□□ 0.54
LIMCH1-221ENST00000515785 CLTCQ00610 1675 aaKnown RBP18.44■□□□□ 0.54
LIMCH1-221ENST00000515785 PPP6R1Q9UPN7 881 aa18.44■□□□□ 0.54
LIMCH1-221ENST00000515785 PREX2Q70Z35 1606 aa18.44■□□□□ 0.54
LIMCH1-221ENST00000515785 MED1Q15648 1581 aaPredicted RBP18.43■□□□□ 0.54
LIMCH1-221ENST00000515785 HNRNPMP52272 730 aaKnown RBP eCLIP18.43■□□□□ 0.54
LIMCH1-221ENST00000515785 GGT6Q6P531 493 aa18.42■□□□□ 0.54
LIMCH1-221ENST00000515785 SPAG9O60271 1321 aaKnown RBP18.42■□□□□ 0.54
LIMCH1-221ENST00000515785 MYO3AQ8NEV4 1616 aa18.41■□□□□ 0.54
LIMCH1-221ENST00000515785 SAMD9LQ8IVG5 1584 aa18.39■□□□□ 0.53
LIMCH1-221ENST00000515785 TOM1O60784 492 aa18.39■□□□□ 0.53
LIMCH1-221ENST00000515785 CDC42BPAQ5VT25 1732 aa18.39■□□□□ 0.53
LIMCH1-221ENST00000515785 PLA2R1Q13018 1463 aa18.39■□□□□ 0.53
LIMCH1-221ENST00000515785 TCOF1Q13428 1488 aaKnown RBP18.39■□□□□ 0.53
LIMCH1-221ENST00000515785 CEP170BQ9Y4F5 1589 aaPredicted RBP18.38■□□□□ 0.53
LIMCH1-221ENST00000515785 PTPRKQ15262 1439 aa18.38■□□□□ 0.53
LIMCH1-221ENST00000515785 ZNF142P52746 1687 aaPredicted RBP18.38■□□□□ 0.53
LIMCH1-221ENST00000515785 SYCP2Q9BX26 1530 aa18.33■□□□□ 0.53
LIMCH1-221ENST00000515785 A2MP01023 1474 aa18.32■□□□□ 0.52
LIMCH1-221ENST00000515785 ATP7AQ04656 1500 aa18.3■□□□□ 0.52
LIMCH1-221ENST00000515785 SHANK2Q9UPX8 1470 aa18.3■□□□□ 0.52
LIMCH1-221ENST00000515785 DNMT1P26358 1616 aaKnown RBP18.3■□□□□ 0.52
LIMCH1-221ENST00000515785 A2ML1A8K2U0 1454 aa18.29■□□□□ 0.52
LIMCH1-221ENST00000515785 FBXO31Q5XUX0 539 aaPredicted RBP18.29■□□□□ 0.52
LIMCH1-221ENST00000515785 CCDC18Q5T9S5 1454 aa18.28■□□□□ 0.52
LIMCH1-221ENST00000515785 CASKIN1Q8WXD9 1431 aa18.27■□□□□ 0.52
LIMCH1-221ENST00000515785 CFDP1Q9UEE9 299 aaPredicted RBP18.27■□□□□ 0.52
LIMCH1-221ENST00000515785 CPS1P31327 1500 aa18.27■□□□□ 0.51
LIMCH1-221ENST00000515785 GPATCH8Q9UKJ3 1502 aaKnown RBP18.27■□□□□ 0.51
LIMCH1-221ENST00000515785 PLXNC1O60486 1568 aa18.26■□□□□ 0.51
LIMCH1-221ENST00000515785 POLR1AO95602 1720 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms