RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 LTBP4Q8N2S1 1624 aa18.37■□□□□ 0.53
NEDD9-215ENST00000514660 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.36■□□□□ 0.53
NEDD9-215ENST00000514660 HNRNPUL2Q1KMD3 747 aaKnown RBP18.36■□□□□ 0.53
NEDD9-215ENST00000514660 MAGI2Q86UL8 1455 aa18.33■□□□□ 0.52
NEDD9-215ENST00000514660 CFAP74Q9C0B2 1584 aa18.31■□□□□ 0.52
NEDD9-215ENST00000514660 ATP10AO60312 1499 aa18.28■□□□□ 0.52
NEDD9-215ENST00000514660 PTPRTO14522 1441 aa18.28■□□□□ 0.52
NEDD9-215ENST00000514660 SCAPERQ9BY12 1400 aa18.28■□□□□ 0.52
NEDD9-215ENST00000514660 DMRT2Q9Y5R5 561 aa18.27■□□□□ 0.52
NEDD9-215ENST00000514660 SETD1BQ9UPS6 1966 aaKnown RBP18.27■□□□□ 0.52
NEDD9-215ENST00000514660 PLEKHD1A6NEE1 506 aa18.26■□□□□ 0.51
NEDD9-215ENST00000514660 C9orf84Q5VXU9 1444 aa18.25■□□□□ 0.51
NEDD9-215ENST00000514660 UHRF1BP1Q6BDS2 1440 aa18.25■□□□□ 0.51
NEDD9-215ENST00000514660 C3P01024 1663 aa18.23■□□□□ 0.51
NEDD9-215ENST00000514660 FAM9AQ8IZU1 332 aaPredicted RBP18.21■□□□□ 0.51
NEDD9-215ENST00000514660 PLCH2O75038 1416 aa18.21■□□□□ 0.51
NEDD9-215ENST00000514660 CDK13Q14004 1512 aaKnown RBP18.2■□□□□ 0.5
NEDD9-215ENST00000514660 IQSEC2Q5JU85 1478 aa18.2■□□□□ 0.5
NEDD9-215ENST00000514660 RANGAP1P46060 587 aaPredicted RBP18.19■□□□□ 0.5
NEDD9-215ENST00000514660 NCOA1Q15788 1441 aa18.17■□□□□ 0.5
NEDD9-215ENST00000514660 DIP2CQ9Y2E4 1556 aa18.16■□□□□ 0.5
NEDD9-215ENST00000514660 AFAP1Q8N556 730 aa18.14■□□□□ 0.49
NEDD9-215ENST00000514660 KDM5CP41229 1560 aa18.13■□□□□ 0.49
NEDD9-215ENST00000514660 ZNF335Q9H4Z2 1342 aaPredicted RBP18.12■□□□□ 0.49
NEDD9-215ENST00000514660 ABCA6Q8N139 1617 aa18.12■□□□□ 0.49
NEDD9-215ENST00000514660 MYO5CQ9NQX4 1742 aa18.1■□□□□ 0.49
NEDD9-215ENST00000514660 KIF14Q15058 1648 aa18.09■□□□□ 0.49
NEDD9-215ENST00000514660 REREQ9P2R6 1566 aa18.09■□□□□ 0.49
NEDD9-215ENST00000514660 TRAPPC8Q9Y2L5 1435 aa18.09■□□□□ 0.49
NEDD9-215ENST00000514660 CAMSAP1Q5T5Y3 1602 aa18.09■□□□□ 0.49
NEDD9-215ENST00000514660 UBAP1LF5GYI3 381 aa18.08■□□□□ 0.48
NEDD9-215ENST00000514660 CSRNP3Q8WYN3 585 aa18.08■□□□□ 0.48
NEDD9-215ENST00000514660 NCKAP5LQ9HCH0 1330 aa18.07■□□□□ 0.48
NEDD9-215ENST00000514660 EFCAB2Q5VUJ9 269 aa18.07■□□□□ 0.48
NEDD9-215ENST00000514660 MED1Q15648 1581 aaPredicted RBP18.07■□□□□ 0.48
NEDD9-215ENST00000514660 ZNF518AQ6AHZ1 1483 aa18.07■□□□□ 0.48
NEDD9-215ENST00000514660 AGLP35573 1532 aa18.04■□□□□ 0.48
NEDD9-215ENST00000514660 HSPA1LP34931 641 aa18.02■□□□□ 0.48
NEDD9-215ENST00000514660 MLH3Q9UHC1 1453 aa18.01■□□□□ 0.47
NEDD9-215ENST00000514660 CDC42BPBQ9Y5S2 1711 aa18.01■□□□□ 0.47
NEDD9-215ENST00000514660 KIDINS220Q9ULH0 1771 aa17.99■□□□□ 0.47
NEDD9-215ENST00000514660 ARHGAP5Q13017 1502 aa17.99■□□□□ 0.47
NEDD9-215ENST00000514660 LRRIQ1Q96JM4 1722 aa17.96■□□□□ 0.47
NEDD9-215ENST00000514660 MYT1LQ9UL68 1186 aa17.96■□□□□ 0.47
NEDD9-215ENST00000514660 TCOF1Q13428 1488 aaKnown RBP17.95■□□□□ 0.46
NEDD9-215ENST00000514660 NPATQ14207 1427 aa17.95■□□□□ 0.46
NEDD9-215ENST00000514660 MROH2AA6NES4 1674 aa17.94■□□□□ 0.46
NEDD9-215ENST00000514660 ZNF142P52746 1687 aaPredicted RBP17.93■□□□□ 0.46
NEDD9-215ENST00000514660 ITSN2Q9NZM3 1697 aa17.93■□□□□ 0.46
NEDD9-215ENST00000514660 ABCC1P33527 1531 aa17.93■□□□□ 0.46
NEDD9-215ENST00000514660 ZMYM3Q14202 1370 aa17.93■□□□□ 0.46
NEDD9-215ENST00000514660 CNTLNQ9NXG0 1405 aa17.93■□□□□ 0.46
NEDD9-215ENST00000514660 MYO3AQ8NEV4 1616 aa17.93■□□□□ 0.46
NEDD9-215ENST00000514660 TROQ12816 1431 aaPredicted RBP17.92■□□□□ 0.46
NEDD9-215ENST00000514660 ALKQ9UM73 1620 aa17.92■□□□□ 0.46
NEDD9-215ENST00000514660 PLA2R1Q13018 1463 aa17.92■□□□□ 0.46
NEDD9-215ENST00000514660 ESF1Q9H501 851 aaKnown RBP17.91■□□□□ 0.46
NEDD9-215ENST00000514660 PIP4K2BP78356 416 aa17.9■□□□□ 0.46
NEDD9-215ENST00000514660 ATP1B4Q9UN42 357 aaPredicted RBP17.9■□□□□ 0.46
NEDD9-215ENST00000514660 SUPT6HQ7KZ85 1726 aaKnown RBP17.89■□□□□ 0.46
NEDD9-215ENST00000514660 CEP170BQ9Y4F5 1589 aaPredicted RBP17.89■□□□□ 0.45
NEDD9-215ENST00000514660 PHF23Q9BUL5 403 aaPredicted RBP17.89■□□□□ 0.45
NEDD9-215ENST00000514660 CLTCQ00610 1675 aaKnown RBP17.89■□□□□ 0.45
NEDD9-215ENST00000514660 PTPRKQ15262 1439 aa17.89■□□□□ 0.45
NEDD9-215ENST00000514660 PREX2Q70Z35 1606 aa17.87■□□□□ 0.45
NEDD9-215ENST00000514660 PKD2Q13563 968 aa17.87■□□□□ 0.45
NEDD9-215ENST00000514660 SCAF1Q9H7N4 1312 aaKnown RBP17.87■□□□□ 0.45
NEDD9-215ENST00000514660 ARHGAP35Q9NRY4 1499 aa17.85■□□□□ 0.45
NEDD9-215ENST00000514660 PPP6R1Q9UPN7 881 aa17.85■□□□□ 0.45
NEDD9-215ENST00000514660 SAMD9LQ8IVG5 1584 aa17.84■□□□□ 0.45
NEDD9-215ENST00000514660 NEURL4Q96JN8 1562 aa17.83■□□□□ 0.45
NEDD9-215ENST00000514660 CDC42BPAQ5VT25 1732 aa17.82■□□□□ 0.44
NEDD9-215ENST00000514660 DNMT1P26358 1616 aaKnown RBP17.81■□□□□ 0.44
NEDD9-215ENST00000514660 RGS17Q9UGC6 210 aaPredicted RBP17.81■□□□□ 0.44
NEDD9-215ENST00000514660 CDK11AQ9UQ88 783 aaPredicted RBP17.81■□□□□ 0.44
NEDD9-215ENST00000514660 FMN1Q68DA7 1419 aa17.81■□□□□ 0.44
NEDD9-215ENST00000514660 PLXNC1O60486 1568 aa17.79■□□□□ 0.44
NEDD9-215ENST00000514660 SHANK2Q9UPX8 1470 aa17.79■□□□□ 0.44
NEDD9-215ENST00000514660 TOM1O60784 492 aa17.78■□□□□ 0.44
NEDD9-215ENST00000514660 CLIP1P30622 1438 aa17.78■□□□□ 0.44
NEDD9-215ENST00000514660 EEA1Q15075 1411 aa17.78■□□□□ 0.44
NEDD9-215ENST00000514660 VWDEQ8N2E2 1590 aa17.78■□□□□ 0.44
NEDD9-215ENST00000514660 CPS1P31327 1500 aa17.77■□□□□ 0.44
NEDD9-215ENST00000514660 A2ML1A8K2U0 1454 aa17.76■□□□□ 0.43
NEDD9-215ENST00000514660 POLR1AO95602 1720 aaPredicted RBP17.76■□□□□ 0.43
NEDD9-215ENST00000514660 EHMT2Q96KQ7 1210 aa17.76■□□□□ 0.43
NEDD9-215ENST00000514660 SYCP2Q9BX26 1530 aa17.76■□□□□ 0.43
NEDD9-215ENST00000514660 SENP3Q9H4L4 574 aaPredicted RBP17.75■□□□□ 0.43
NEDD9-215ENST00000514660 STRCP1A6NGW2 1772 aa17.74■□□□□ 0.43
NEDD9-215ENST00000514660 HNRNPMP52272 730 aaKnown RBP eCLIP17.73■□□□□ 0.43
NEDD9-215ENST00000514660 INO80Q9ULG1 1556 aaPredicted RBP17.73■□□□□ 0.43
NEDD9-215ENST00000514660 ATP7AQ04656 1500 aa17.72■□□□□ 0.43
NEDD9-215ENST00000514660 A2MP01023 1474 aa17.72■□□□□ 0.43
NEDD9-215ENST00000514660 GGT6Q6P531 493 aa17.72■□□□□ 0.43
NEDD9-215ENST00000514660 SPAG9O60271 1321 aaKnown RBP17.72■□□□□ 0.43
NEDD9-215ENST00000514660 FBXO31Q5XUX0 539 aaPredicted RBP17.7■□□□□ 0.42
NEDD9-215ENST00000514660 ZNF777Q9ULD5 760 aaPredicted RBP17.7■□□□□ 0.42
NEDD9-215ENST00000514660 GPATCH8Q9UKJ3 1502 aaKnown RBP17.68■□□□□ 0.42
NEDD9-215ENST00000514660 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.66■□□□□ 0.42
NEDD9-215ENST00000514660 LRRC7Q96NW7 1537 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms