RNA–Protein interactions for RNA: ENST00000514439.1

CPNE4-211, Transcript of copine 4, humanhuman

TSL 1 (best)

Gene CPNE4, Length 2,312 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4-211ENST00000514439 ZNF644Q9H582 1327 aaPredicted RBP11.78□□□□□ -0.52
CPNE4-211ENST00000514439 TONSLQ96HA7 1378 aa11.78□□□□□ -0.52
CPNE4-211ENST00000514439 ABCC5O15440 1437 aa11.78□□□□□ -0.52
CPNE4-211ENST00000514439 ROCK1Q13464 1354 aa11.78□□□□□ -0.52
CPNE4-211ENST00000514439 ADCY10Q96PN6 1610 aa11.78□□□□□ -0.52
CPNE4-211ENST00000514439 KIF14Q15058 1648 aa11.77□□□□□ -0.52
CPNE4-211ENST00000514439 DENND4BO75064 1496 aaPredicted RBP11.77□□□□□ -0.53
CPNE4-211ENST00000514439 GPATCH8Q9UKJ3 1502 aaKnown RBP11.76□□□□□ -0.53
CPNE4-211ENST00000514439 ITSN2Q9NZM3 1697 aa11.76□□□□□ -0.53
CPNE4-211ENST00000514439 TRIM52Q96A61 297 aa11.76□□□□□ -0.53
CPNE4-211ENST00000514439 CAMSAP2Q08AD1 1489 aa11.76□□□□□ -0.53
CPNE4-211ENST00000514439 CFDP1Q9UEE9 299 aaPredicted RBP11.75□□□□□ -0.53
CPNE4-211ENST00000514439 ATP10BO94823 1461 aa11.74□□□□□ -0.53
CPNE4-211ENST00000514439 CHD1O14646 1710 aa11.73□□□□□ -0.53
CPNE4-211ENST00000514439 KDM5BQ9UGL1 1544 aa11.72□□□□□ -0.53
CPNE4-211ENST00000514439 PTPRGP23470 1445 aa11.72□□□□□ -0.53
CPNE4-211ENST00000514439 PLEKHD1A6NEE1 506 aa11.72□□□□□ -0.53
CPNE4-211ENST00000514439 MPHOSPH9Q99550 1183 aa11.71□□□□□ -0.53
CPNE4-211ENST00000514439 ABCC10Q5T3U5 1492 aa11.71□□□□□ -0.54
CPNE4-211ENST00000514439 ZNF777Q9ULD5 760 aaPredicted RBP11.7□□□□□ -0.54
CPNE4-211ENST00000514439 GTF3C3Q9Y5Q9 886 aa11.7□□□□□ -0.54
CPNE4-211ENST00000514439 SHROOM2Q13796 1616 aa11.69□□□□□ -0.54
CPNE4-211ENST00000514439 NCOA1Q15788 1441 aa11.68□□□□□ -0.54
CPNE4-211ENST00000514439 MSH5O43196 834 aa11.68□□□□□ -0.54
CPNE4-211ENST00000514439 HIRIP3Q9BW71 556 aaPredicted RBP11.68□□□□□ -0.54
CPNE4-211ENST00000514439 ADGRL2O95490 1459 aa11.68□□□□□ -0.54
CPNE4-211ENST00000514439 CROCC2H7BZ55 1655 aa11.68□□□□□ -0.54
CPNE4-211ENST00000514439 CDC42BPAQ5VT25 1732 aa11.68□□□□□ -0.54
CPNE4-211ENST00000514439 ADGBQ8N7X0 1667 aa11.68□□□□□ -0.54
CPNE4-211ENST00000514439 DDX10Q13206 875 aaKnown RBP11.66□□□□□ -0.54
CPNE4-211ENST00000514439 PIAS4Q8N2W9 510 aaPredicted RBP11.66□□□□□ -0.54
CPNE4-211ENST00000514439 ANKRD30BQ9BXX2 1392 aa11.65□□□□□ -0.54
CPNE4-211ENST00000514439 PPP6R1Q9UPN7 881 aa11.65□□□□□ -0.54
CPNE4-211ENST00000514439 ANKRD30AQ9BXX3 1397 aa11.64□□□□□ -0.55
CPNE4-211ENST00000514439 SLC4A1APQ9BWU0 796 aaKnown RBP11.64□□□□□ -0.55
CPNE4-211ENST00000514439 PZPP20742 1482 aa11.64□□□□□ -0.55
CPNE4-211ENST00000514439 SHANK2Q9UPX8 1470 aa11.64□□□□□ -0.55
CPNE4-211ENST00000514439 ERCC6L2Q5T890 1561 aa11.64□□□□□ -0.55
CPNE4-211ENST00000514439 ADRA2BP18089 450 aa11.63□□□□□ -0.55
CPNE4-211ENST00000514439 RPRD2Q5VT52 1461 aaKnown RBP11.63□□□□□ -0.55
CPNE4-211ENST00000514439 C9orf84Q5VXU9 1444 aa11.62□□□□□ -0.55
CPNE4-211ENST00000514439 L3MBTL2Q969R5 705 aa11.61□□□□□ -0.55
CPNE4-211ENST00000514439 ANKRD50Q9ULJ7 1429 aa11.61□□□□□ -0.55
CPNE4-211ENST00000514439 ABCC2Q92887 1545 aa11.6□□□□□ -0.55
CPNE4-211ENST00000514439 TEX14Q8IWB6 1497 aa11.6□□□□□ -0.55
CPNE4-211ENST00000514439 PREX2Q70Z35 1606 aa11.6□□□□□ -0.55
CPNE4-211ENST00000514439 CLASP1Q7Z460 1538 aa11.6□□□□□ -0.55
CPNE4-211ENST00000514439 ARHGEF5Q12774 1597 aa11.59□□□□□ -0.55
CPNE4-211ENST00000514439 MBD5Q9P267 1494 aa11.59□□□□□ -0.55
CPNE4-211ENST00000514439 KCNH8Q96L42 1107 aa11.59□□□□□ -0.55
CPNE4-211ENST00000514439 SAMD9LQ8IVG5 1584 aa11.58□□□□□ -0.56
CPNE4-211ENST00000514439 HNRNPMP52272 730 aaKnown RBP eCLIP11.58□□□□□ -0.56
CPNE4-211ENST00000514439 TSPY4P0CV99 314 aa11.58□□□□□ -0.56
CPNE4-211ENST00000514439 TSPY10P0CW01 314 aa11.58□□□□□ -0.56
CPNE4-211ENST00000514439 CDC42BPBQ9Y5S2 1711 aa11.58□□□□□ -0.56
CPNE4-211ENST00000514439 KIAA1107Q9UPP5 1409 aa11.57□□□□□ -0.56
CPNE4-211ENST00000514439 TTC37Q6PGP7 1564 aa11.57□□□□□ -0.56
CPNE4-211ENST00000514439 CCDC141Q6ZP82 1450 aa11.57□□□□□ -0.56
CPNE4-211ENST00000514439 HSPA5P11021 654 aaKnown RBP11.57□□□□□ -0.56
CPNE4-211ENST00000514439 KIF15Q9NS87 1388 aa11.56□□□□□ -0.56
CPNE4-211ENST00000514439 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.56□□□□□ -0.56
CPNE4-211ENST00000514439 PKD2Q13563 968 aa11.55□□□□□ -0.56
CPNE4-211ENST00000514439 EIF4G2P78344 907 aaKnown RBP eCLIP11.55□□□□□ -0.56
CPNE4-211ENST00000514439 NBPF8Q3BBV2 869 aa11.54□□□□□ -0.56
CPNE4-211ENST00000514439 ARHGAP5Q13017 1502 aa11.54□□□□□ -0.56
CPNE4-211ENST00000514439 ANP32CO43423 234 aa11.54□□□□□ -0.56
CPNE4-211ENST00000514439 NUP155O75694 1391 aa11.54□□□□□ -0.56
CPNE4-211ENST00000514439 SYCP2Q9BX26 1530 aa11.54□□□□□ -0.56
CPNE4-211ENST00000514439 KDM5DQ9BY66 1539 aa11.54□□□□□ -0.56
CPNE4-211ENST00000514439 WASHC2AQ641Q2 1341 aa11.52□□□□□ -0.56
CPNE4-211ENST00000514439 UHRF1BP1LA0JNW5 1464 aa11.52□□□□□ -0.56
CPNE4-211ENST00000514439 RSPH4AQ5TD94 716 aa11.52□□□□□ -0.57
CPNE4-211ENST00000514439 CCER2I3L3R5 266 aa11.52□□□□□ -0.57
CPNE4-211ENST00000514439 ZCCHC11Q5TAX3 1644 aaKnown RBP11.51□□□□□ -0.57
CPNE4-211ENST00000514439 MYO5CQ9NQX4 1742 aa11.51□□□□□ -0.57
CPNE4-211ENST00000514439 MAST1Q9Y2H9 1570 aa11.5□□□□□ -0.57
CPNE4-211ENST00000514439 PLEKHH2Q8IVE3 1493 aa11.49□□□□□ -0.57
CPNE4-211ENST00000514439 SPATA31E1Q6ZUB1 1445 aa11.48□□□□□ -0.57
CPNE4-211ENST00000514439 PLCH2O75038 1416 aa11.47□□□□□ -0.57
CPNE4-211ENST00000514439 ARHGEF12Q9NZN5 1544 aa11.47□□□□□ -0.57
CPNE4-211ENST00000514439 FAM135AQ9P2D6 1515 aa11.47□□□□□ -0.57
CPNE4-211ENST00000514439 CCDC7Q96M83 1385 aa11.46□□□□□ -0.57
CPNE4-211ENST00000514439 C11orf95C9JLR9 678 aaPredicted RBP11.46□□□□□ -0.57
CPNE4-211ENST00000514439 PLXNC1O60486 1568 aa11.46□□□□□ -0.58
CPNE4-211ENST00000514439 CNTLNQ9NXG0 1405 aa11.46□□□□□ -0.58
CPNE4-211ENST00000514439 UNC13BO14795 1591 aa11.44□□□□□ -0.58
CPNE4-211ENST00000514439 ZNF326Q5BKZ1 582 aaKnown RBP11.44□□□□□ -0.58
CPNE4-211ENST00000514439 ABCC1P33527 1531 aa11.43□□□□□ -0.58
CPNE4-211ENST00000514439 EFCAB2Q5VUJ9 269 aa11.43□□□□□ -0.58
CPNE4-211ENST00000514439 UHRF1BP1Q6BDS2 1440 aa11.43□□□□□ -0.58
CPNE4-211ENST00000514439 KIF7Q2M1P5 1343 aa11.42□□□□□ -0.58
CPNE4-211ENST00000514439 DUOX2Q9NRD8 1548 aa11.42□□□□□ -0.58
CPNE4-211ENST00000514439 USP47Q96K76 1375 aa11.42□□□□□ -0.58
CPNE4-211ENST00000514439 RALGAPBQ86X10 1494 aa11.41□□□□□ -0.58
CPNE4-211ENST00000514439 TRAPPC8Q9Y2L5 1435 aa11.41□□□□□ -0.58
CPNE4-211ENST00000514439 WDR7Q9Y4E6 1490 aa11.41□□□□□ -0.58
CPNE4-211ENST00000514439 ERBINQ96RT1 1412 aa11.4□□□□□ -0.58
CPNE4-211ENST00000514439 ARAP3Q8WWN8 1544 aa11.4□□□□□ -0.58
CPNE4-211ENST00000514439 IQGAP3Q86VI3 1631 aa11.4□□□□□ -0.58
CPNE4-211ENST00000514439 POLR1AO95602 1720 aaPredicted RBP11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms