RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ANKRD30AQ9BXX3 1397 aa11□□□□□ -0.65
LIMCH1-216ENST00000512820 ARXQ96QS3 562 aa10.99□□□□□ -0.65
LIMCH1-216ENST00000512820 TIAM1Q13009 1591 aa10.99□□□□□ -0.65
LIMCH1-216ENST00000512820 BECN1Q14457 450 aa10.99□□□□□ -0.65
LIMCH1-216ENST00000512820 CCDC7Q96M83 1385 aa10.99□□□□□ -0.65
LIMCH1-216ENST00000512820 RTN4Q9NQC3 1192 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-216ENST00000512820 HSP90AA1P07900 732 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-216ENST00000512820 ROCK2O75116 1388 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-216ENST00000512820 CNTLNQ9NXG0 1405 aa10.97□□□□□ -0.65
LIMCH1-216ENST00000512820 FYCO1Q9BQS8 1478 aa10.97□□□□□ -0.65
LIMCH1-216ENST00000512820 KIF7Q2M1P5 1343 aa10.97□□□□□ -0.65
LIMCH1-216ENST00000512820 NCOA2Q15596 1464 aa10.96□□□□□ -0.65
LIMCH1-216ENST00000512820 NLRP13Q86W25 1043 aa10.96□□□□□ -0.66
LIMCH1-216ENST00000512820 ST20-MTHFSA0A0A6YYL1 179 aa10.96□□□□□ -0.66
LIMCH1-216ENST00000512820 USP47Q96K76 1375 aa10.95□□□□□ -0.66
LIMCH1-216ENST00000512820 NEUROD2Q15784 382 aa10.95□□□□□ -0.66
LIMCH1-216ENST00000512820 KIF15Q9NS87 1388 aa10.94□□□□□ -0.66
LIMCH1-216ENST00000512820 MYBBP1AQ9BQG0 1328 aaKnown RBP10.94□□□□□ -0.66
LIMCH1-216ENST00000512820 PDE3BQ13370 1112 aa10.94□□□□□ -0.66
LIMCH1-216ENST00000512820 HFM1A2PYH4 1435 aa10.93□□□□□ -0.66
LIMCH1-216ENST00000512820 BICRAQ9NZM4 1560 aa10.93□□□□□ -0.66
LIMCH1-216ENST00000512820 FRAT1Q92837 279 aaPredicted RBP10.93□□□□□ -0.66
LIMCH1-216ENST00000512820 GAPVD1Q14C86 1478 aa10.92□□□□□ -0.66
LIMCH1-216ENST00000512820 ZNF644Q9H582 1327 aaPredicted RBP10.92□□□□□ -0.66
LIMCH1-216ENST00000512820 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 HNRNPMP52272 730 aaKnown RBP eCLIP10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 EXOC6Q8TAG9 804 aa10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 CARMIL2Q6F5E8 1435 aa10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 ANP32BQ92688 251 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 CFAP53Q96M91 514 aa10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 PEG3Q9GZU2 1588 aa10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 RRP1P56182 461 aaKnown RBP10.91□□□□□ -0.66
LIMCH1-216ENST00000512820 CCDC184Q52MB2 194 aa10.9□□□□□ -0.66
LIMCH1-216ENST00000512820 HMGXB3Q12766 1538 aa10.9□□□□□ -0.66
LIMCH1-216ENST00000512820 TNNT2P45379 298 aaPredicted RBP10.9□□□□□ -0.67
LIMCH1-216ENST00000512820 PDE4AP27815 886 aa10.89□□□□□ -0.67
LIMCH1-216ENST00000512820 EFCAB5A4FU69 1503 aa10.89□□□□□ -0.67
LIMCH1-216ENST00000512820 STAG3Q9UJ98 1225 aa10.89□□□□□ -0.67
LIMCH1-216ENST00000512820 NPM1P06748 294 aaKnown RBP eCLIP10.88□□□□□ -0.67
LIMCH1-216ENST00000512820 NBPF8Q3BBV2 869 aa10.88□□□□□ -0.67
LIMCH1-216ENST00000512820 MAP3K1Q13233 1512 aa10.88□□□□□ -0.67
LIMCH1-216ENST00000512820 ERCC6Q03468 1493 aa10.88□□□□□ -0.67
LIMCH1-216ENST00000512820 FTSJ3Q8IY81 847 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-216ENST00000512820 PLIN1O60240 522 aa10.87□□□□□ -0.67
LIMCH1-216ENST00000512820 SENP3Q9H4L4 574 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-216ENST00000512820 NAIPQ13075 1403 aa10.87□□□□□ -0.67
LIMCH1-216ENST00000512820 SLC24A1O60721 1099 aa10.87□□□□□ -0.67
LIMCH1-216ENST00000512820 PANK3Q9H999 370 aa10.86□□□□□ -0.67
LIMCH1-216ENST00000512820 ARID4BQ4LE39 1312 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-216ENST00000512820 GOLGA2Q08379 1002 aa10.86□□□□□ -0.67
LIMCH1-216ENST00000512820 MAPKBP1O60336 1514 aa10.85□□□□□ -0.67
LIMCH1-216ENST00000512820 JPH4Q96JJ6 628 aa10.85□□□□□ -0.67
LIMCH1-216ENST00000512820 PCF11O94913 1555 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-216ENST00000512820 RSPH4AQ5TD94 716 aa10.83□□□□□ -0.68
LIMCH1-216ENST00000512820 CRBNQ96SW2 442 aa10.83□□□□□ -0.68
LIMCH1-216ENST00000512820 BIVM-ERCC5R4GMW8 1640 aa10.83□□□□□ -0.68
LIMCH1-216ENST00000512820 MSH5O43196 834 aa10.83□□□□□ -0.68
LIMCH1-216ENST00000512820 MORC1Q86VD1 984 aa10.83□□□□□ -0.68
LIMCH1-216ENST00000512820 MYH16Q9H6N6 1097 aa10.83□□□□□ -0.68
LIMCH1-216ENST00000512820 POLA1P09884 1462 aaPredicted RBP10.82□□□□□ -0.68
LIMCH1-216ENST00000512820 CCDC144AA2RUR9 1427 aa10.82□□□□□ -0.68
LIMCH1-216ENST00000512820 USP35Q9P2H5 1018 aa10.82□□□□□ -0.68
LIMCH1-216ENST00000512820 EHBP1L1Q8N3D4 1523 aa10.82□□□□□ -0.68
LIMCH1-216ENST00000512820 MS4A1P11836 297 aa10.82□□□□□ -0.68
LIMCH1-216ENST00000512820 CCDC146Q8IYE0 955 aa10.82□□□□□ -0.68
LIMCH1-216ENST00000512820 C11orf95C9JLR9 678 aaPredicted RBP10.81□□□□□ -0.68
LIMCH1-216ENST00000512820 AKNAQ7Z591 1439 aa10.81□□□□□ -0.68
LIMCH1-216ENST00000512820 MAPK8IP3Q9UPT6 1336 aa10.81□□□□□ -0.68
LIMCH1-216ENST00000512820 TOPBP1Q92547 1522 aa10.8□□□□□ -0.68
LIMCH1-216ENST00000512820 MIA2Q96PC5 1412 aa10.8□□□□□ -0.68
LIMCH1-216ENST00000512820 GLIPR1L2Q4G1C9 344 aa10.8□□□□□ -0.68
LIMCH1-216ENST00000512820 KANK1Q14678 1352 aa10.8□□□□□ -0.68
LIMCH1-216ENST00000512820 AQRO60306 1485 aaKnown RBP eCLIP10.8□□□□□ -0.68
LIMCH1-216ENST00000512820 CENPQQ7L2Z9 268 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-216ENST00000512820 U2SURPO15042 1029 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-216ENST00000512820 SLC4A3P48751 1232 aa10.79□□□□□ -0.68
LIMCH1-216ENST00000512820 BRD4O60885 1362 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-216ENST00000512820 PAK3O75914 559 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-216ENST00000512820 PNISRQ8TF01 805 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-216ENST00000512820 TRIM44Q96DX7 344 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-216ENST00000512820 ANKRD50Q9ULJ7 1429 aa10.79□□□□□ -0.68
LIMCH1-216ENST00000512820 EFCAB2Q5VUJ9 269 aa10.78□□□□□ -0.68
LIMCH1-216ENST00000512820 NESP48681 1621 aa10.78□□□□□ -0.68
LIMCH1-216ENST00000512820 SMG6Q86US8 1419 aaKnown RBP10.78□□□□□ -0.68
LIMCH1-216ENST00000512820 SLKQ9H2G2 1235 aaPredicted RBP10.78□□□□□ -0.68
LIMCH1-216ENST00000512820 SPRYD3Q8NCJ5 442 aa10.78□□□□□ -0.68
LIMCH1-216ENST00000512820 FAM161AQ3B820 660 aa10.77□□□□□ -0.68
LIMCH1-216ENST00000512820 UNC13AQ9UPW8 1703 aa10.77□□□□□ -0.69
LIMCH1-216ENST00000512820 GOLGA6L22H0YM25 854 aa10.77□□□□□ -0.69
LIMCH1-216ENST00000512820 ABCA10Q8WWZ4 1543 aa10.76□□□□□ -0.69
LIMCH1-216ENST00000512820 CDCA7LQ96GN5 454 aa10.76□□□□□ -0.69
LIMCH1-216ENST00000512820 ESF1Q9H501 851 aaKnown RBP10.76□□□□□ -0.69
LIMCH1-216ENST00000512820 CENPJQ9HC77 1338 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-216ENST00000512820 L1TD1Q5T7N2 865 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-216ENST00000512820 RWDD1Q9H446 243 aaPredicted RBP10.75□□□□□ -0.69
LIMCH1-216ENST00000512820 EIF3AQ14152 1382 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-216ENST00000512820 SUPT6HQ7KZ85 1726 aaKnown RBP10.75□□□□□ -0.69
LIMCH1-216ENST00000512820 KIAA1107Q9UPP5 1409 aa10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 DNMBPQ6XZF7 1577 aa10.74□□□□□ -0.69
LIMCH1-216ENST00000512820 DAPK1P53355 1430 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms