RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 CFAP43Q8NDM7 1665 aa5.44□□□□□ -1.54
NEDD4-209ENST00000508871 NESP48681 1621 aa5.44□□□□□ -1.54
NEDD4-209ENST00000508871 SMYD5Q6GMV2 418 aa5.44□□□□□ -1.54
NEDD4-209ENST00000508871 LAS1LQ9Y4W2 734 aaKnown RBP5.44□□□□□ -1.54
NEDD4-209ENST00000508871 IFNLR1Q8IU57 520 aaPredicted RBP5.44□□□□□ -1.54
NEDD4-209ENST00000508871 RYDENQ9NUL5 291 aaKnown RBP5.44□□□□□ -1.54
NEDD4-209ENST00000508871 RAPGEF2Q9Y4G8 1499 aa5.44□□□□□ -1.54
NEDD4-209ENST00000508871 MAP3K1Q13233 1512 aa5.44□□□□□ -1.54
NEDD4-209ENST00000508871 SAMD1Q6SPF0 538 aaPredicted RBP5.43□□□□□ -1.54
NEDD4-209ENST00000508871 RUSC2Q8N2Y8 1516 aa5.43□□□□□ -1.54
NEDD4-209ENST00000508871 CEP162Q5TB80 1403 aa5.43□□□□□ -1.54
NEDD4-209ENST00000508871 RGL2O15211 777 aa5.43□□□□□ -1.54
NEDD4-209ENST00000508871 WWC1Q8IX03 1113 aa5.43□□□□□ -1.54
NEDD4-209ENST00000508871 SLC24A3Q9HC58 644 aa5.43□□□□□ -1.54
NEDD4-209ENST00000508871 PKD2Q13563 968 aa5.43□□□□□ -1.54
NEDD4-209ENST00000508871 SAMD9Q5K651 1589 aa5.42□□□□□ -1.54
NEDD4-209ENST00000508871 CUX2O14529 1486 aa5.42□□□□□ -1.54
NEDD4-209ENST00000508871 DCAF8Q5TAQ9 597 aa5.42□□□□□ -1.54
NEDD4-209ENST00000508871 DHX37Q8IY37 1157 aaKnown RBP5.41□□□□□ -1.54
NEDD4-209ENST00000508871 GLIPR1L2Q4G1C9 344 aa5.41□□□□□ -1.54
NEDD4-209ENST00000508871 ZBTB47Q9UFB7 747 aaPredicted RBP5.41□□□□□ -1.54
NEDD4-209ENST00000508871 HMGB1P1B2RPK0 211 aaPredicted RBP5.41□□□□□ -1.54
NEDD4-209ENST00000508871 MFAP1P55081 439 aaKnown RBP5.41□□□□□ -1.54
NEDD4-209ENST00000508871 STK24Q9Y6E0 443 aa5.41□□□□□ -1.54
NEDD4-209ENST00000508871 EIF4G3O43432 1585 aaKnown RBP5.4□□□□□ -1.54
NEDD4-209ENST00000508871 BRPF1P55201 1214 aaPredicted RBP5.4□□□□□ -1.54
NEDD4-209ENST00000508871 AQRO60306 1485 aaKnown RBP eCLIP5.4□□□□□ -1.54
NEDD4-209ENST00000508871 NPM1P06748 294 aaKnown RBP eCLIP5.4□□□□□ -1.54
NEDD4-209ENST00000508871 MTMR7Q9Y216 660 aa5.4□□□□□ -1.55
NEDD4-209ENST00000508871 NCLP19338 710 aaKnown RBP5.39□□□□□ -1.55
NEDD4-209ENST00000508871 HRCP23327 699 aa5.39□□□□□ -1.55
NEDD4-209ENST00000508871 TAF7LQ5H9L4 462 aa5.39□□□□□ -1.55
NEDD4-209ENST00000508871 RTL5Q5HYW3 569 aaPredicted RBP5.39□□□□□ -1.55
NEDD4-209ENST00000508871 NOL8Q76FK4 1167 aaKnown RBP5.39□□□□□ -1.55
NEDD4-209ENST00000508871 GAPVD1Q14C86 1478 aa5.39□□□□□ -1.55
NEDD4-209ENST00000508871 IGF1RP08069 1367 aa5.38□□□□□ -1.55
NEDD4-209ENST00000508871 MAGI1Q96QZ7 1491 aaPredicted RBP5.38□□□□□ -1.55
NEDD4-209ENST00000508871 VPS8Q8N3P4 1428 aa5.38□□□□□ -1.55
NEDD4-209ENST00000508871 GRIN2BQ13224 1484 aa5.38□□□□□ -1.55
NEDD4-209ENST00000508871 ARAP1Q96P48 1450 aa5.38□□□□□ -1.55
NEDD4-209ENST00000508871 ZNF777Q9ULD5 760 aaPredicted RBP5.37□□□□□ -1.55
NEDD4-209ENST00000508871 CLIP1P30622 1438 aa5.37□□□□□ -1.55
NEDD4-209ENST00000508871 FHAD1B1AJZ9 1412 aa5.37□□□□□ -1.55
NEDD4-209ENST00000508871 CCDC82Q8N4S0 544 aa5.37□□□□□ -1.55
NEDD4-209ENST00000508871 CCDC136Q96JN2 1154 aa5.37□□□□□ -1.55
NEDD4-209ENST00000508871 RAD54L2Q9Y4B4 1467 aa5.37□□□□□ -1.55
NEDD4-209ENST00000508871 CNGB1Q14028 1251 aaPredicted RBP5.36□□□□□ -1.55
NEDD4-209ENST00000508871 CARMIL1Q5VZK9 1371 aa5.36□□□□□ -1.55
NEDD4-209ENST00000508871 UGGT2Q9NYU1 1516 aa5.36□□□□□ -1.55
NEDD4-209ENST00000508871 IQGAP2Q13576 1575 aa5.36□□□□□ -1.55
NEDD4-209ENST00000508871 TRHP20396 242 aaPredicted RBP5.36□□□□□ -1.55
NEDD4-209ENST00000508871 ERCC6Q03468 1493 aa5.36□□□□□ -1.55
NEDD4-209ENST00000508871 FYCO1Q9BQS8 1478 aa5.36□□□□□ -1.55
NEDD4-209ENST00000508871 CLSTN1O94985 981 aa5.35□□□□□ -1.55
NEDD4-209ENST00000508871 NAP1L5Q96NT1 182 aaPredicted RBP5.35□□□□□ -1.55
NEDD4-209ENST00000508871 LOC105371045A0A1W2PR82 267 aa5.35□□□□□ -1.55
NEDD4-209ENST00000508871 HECW1Q76N89 1606 aa5.35□□□□□ -1.55
NEDD4-209ENST00000508871 TTLL12Q14166 644 aaPredicted RBP5.34□□□□□ -1.55
NEDD4-209ENST00000508871 RSPH4AQ5TD94 716 aa5.34□□□□□ -1.55
NEDD4-209ENST00000508871 ARHGAP35Q9NRY4 1499 aa5.34□□□□□ -1.55
NEDD4-209ENST00000508871 TIAM1Q13009 1591 aa5.34□□□□□ -1.55
NEDD4-209ENST00000508871 UBE2Q2Q8WVN8 375 aa5.34□□□□□ -1.56
NEDD4-209ENST00000508871 ZNF316A6NFI3 1004 aaPredicted RBP5.33□□□□□ -1.56
NEDD4-209ENST00000508871 MAPK8IP2Q13387 824 aaPredicted RBP5.33□□□□□ -1.56
NEDD4-209ENST00000508871 FLIIQ13045 1269 aa5.33□□□□□ -1.56
NEDD4-209ENST00000508871 PCF11O94913 1555 aaKnown RBP5.33□□□□□ -1.56
NEDD4-209ENST00000508871 RNF216Q9NWF9 866 aaPredicted RBP5.33□□□□□ -1.56
NEDD4-209ENST00000508871 LRRIQ1Q96JM4 1722 aa5.33□□□□□ -1.56
NEDD4-209ENST00000508871 CCDC18Q5T9S5 1454 aa5.32□□□□□ -1.56
NEDD4-209ENST00000508871 SHROOM2Q13796 1616 aa5.32□□□□□ -1.56
NEDD4-209ENST00000508871 PUS7Q96PZ0 661 aaKnown RBP5.32□□□□□ -1.56
NEDD4-209ENST00000508871 KIAA0556O60303 1618 aa5.32□□□□□ -1.56
NEDD4-209ENST00000508871 SYNJ2O15056 1496 aa5.32□□□□□ -1.56
NEDD4-209ENST00000508871 ADCY10Q96PN6 1610 aa5.32□□□□□ -1.56
NEDD4-209ENST00000508871 MSH5O43196 834 aa5.31□□□□□ -1.56
NEDD4-209ENST00000508871 GPBP1L1Q9HC44 474 aaPredicted RBP5.31□□□□□ -1.56
NEDD4-209ENST00000508871 CSB-PGBD3P0DP91 1061 aa5.31□□□□□ -1.56
NEDD4-209ENST00000508871 RFX1P22670 979 aa5.31□□□□□ -1.56
NEDD4-209ENST00000508871 CASKIN1Q8WXD9 1431 aa5.31□□□□□ -1.56
NEDD4-209ENST00000508871 CHD1O14646 1710 aa5.31□□□□□ -1.56
NEDD4-209ENST00000508871 IGSF3O75054 1194 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 FMN1Q68DA7 1419 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 GRIN2AQ12879 1464 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 ZNF592Q92610 1267 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 CWC22Q9HCG8 908 aaKnown RBP5.3□□□□□ -1.56
NEDD4-209ENST00000508871 CEP170Q5SW79 1584 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 EHBP1L1Q8N3D4 1523 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 CCDC27Q2M243 656 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 TMX4Q9H1E5 349 aaPredicted RBP5.3□□□□□ -1.56
NEDD4-209ENST00000508871 SNAPC4Q5SXM2 1469 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 SUPT6HQ7KZ85 1726 aaKnown RBP5.3□□□□□ -1.56
NEDD4-209ENST00000508871 KIAA0586Q9BVV6 1533 aa5.3□□□□□ -1.56
NEDD4-209ENST00000508871 PCMTD1Q96MG8 357 aaPredicted RBP5.29□□□□□ -1.56
NEDD4-209ENST00000508871 GORABQ5T7V8 394 aa5.29□□□□□ -1.56
NEDD4-209ENST00000508871 PRM3Q9NNZ6 103 aa5.29□□□□□ -1.56
NEDD4-209ENST00000508871 NUP160Q12769 1436 aa5.29□□□□□ -1.56
NEDD4-209ENST00000508871 RAPGEF6Q8TEU7 1601 aa5.28□□□□□ -1.56
NEDD4-209ENST00000508871 ITSN2Q9NZM3 1697 aa5.28□□□□□ -1.56
NEDD4-209ENST00000508871 CLSPNQ9HAW4 1339 aa5.27□□□□□ -1.57
NEDD4-209ENST00000508871 RRBP1Q9P2E9 1410 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms