RNA–Protein interactions for RNA: ENST00000508800.1

NEDD9-212, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 834 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-212ENST00000508800 NUP153P49790 1475 aaKnown RBP19.38■□□□□ 0.69
NEDD9-212ENST00000508800 IQSEC2Q5JU85 1478 aa19.37■□□□□ 0.69
NEDD9-212ENST00000508800 P3H3Q8IVL6 736 aa19.36■□□□□ 0.69
NEDD9-212ENST00000508800 HECW1Q76N89 1606 aa19.36■□□□□ 0.69
NEDD9-212ENST00000508800 UHRF1BP1Q6BDS2 1440 aa19.35■□□□□ 0.69
NEDD9-212ENST00000508800 PLEKHD1A6NEE1 506 aa19.35■□□□□ 0.69
NEDD9-212ENST00000508800 PTPRTO14522 1441 aa19.34■□□□□ 0.69
NEDD9-212ENST00000508800 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.34■□□□□ 0.69
NEDD9-212ENST00000508800 MLECQ14165 292 aa19.33■□□□□ 0.68
NEDD9-212ENST00000508800 ATP10AO60312 1499 aa19.32■□□□□ 0.68
NEDD9-212ENST00000508800 C9orf84Q5VXU9 1444 aa19.32■□□□□ 0.68
NEDD9-212ENST00000508800 SCAPERQ9BY12 1400 aa19.26■□□□□ 0.67
NEDD9-212ENST00000508800 LTBP4Q8N2S1 1624 aa19.26■□□□□ 0.67
NEDD9-212ENST00000508800 PLCH2O75038 1416 aa19.23■□□□□ 0.67
NEDD9-212ENST00000508800 CEBPAP49715 358 aaPredicted RBP19.22■□□□□ 0.67
NEDD9-212ENST00000508800 ZNF518AQ6AHZ1 1483 aa19.2■□□□□ 0.66
NEDD9-212ENST00000508800 REREQ9P2R6 1566 aa19.19■□□□□ 0.66
NEDD9-212ENST00000508800 MYO5CQ9NQX4 1742 aa19.18■□□□□ 0.66
NEDD9-212ENST00000508800 C3P01024 1663 aa19.17■□□□□ 0.66
NEDD9-212ENST00000508800 KDM5CP41229 1560 aa19.16■□□□□ 0.66
NEDD9-212ENST00000508800 NCOA1Q15788 1441 aa19.16■□□□□ 0.66
NEDD9-212ENST00000508800 EFCAB2Q5VUJ9 269 aa19.15■□□□□ 0.66
NEDD9-212ENST00000508800 TRAPPC8Q9Y2L5 1435 aa19.15■□□□□ 0.66
NEDD9-212ENST00000508800 AGLP35573 1532 aa19.12■□□□□ 0.65
NEDD9-212ENST00000508800 DIP2CQ9Y2E4 1556 aa19.11■□□□□ 0.65
NEDD9-212ENST00000508800 ESF1Q9H501 851 aaKnown RBP19.11■□□□□ 0.65
NEDD9-212ENST00000508800 CNTLNQ9NXG0 1405 aa19.1■□□□□ 0.65
NEDD9-212ENST00000508800 CDK13Q14004 1512 aaKnown RBP19.09■□□□□ 0.65
NEDD9-212ENST00000508800 CSRNP3Q8WYN3 585 aa19.08■□□□□ 0.64
NEDD9-212ENST00000508800 UBAP1LF5GYI3 381 aa19.07■□□□□ 0.64
NEDD9-212ENST00000508800 MLH3Q9UHC1 1453 aa19.06■□□□□ 0.64
NEDD9-212ENST00000508800 CAMSAP1Q5T5Y3 1602 aa19.06■□□□□ 0.64
NEDD9-212ENST00000508800 NPATQ14207 1427 aa19.06■□□□□ 0.64
NEDD9-212ENST00000508800 MROH2AA6NES4 1674 aa19.05■□□□□ 0.64
NEDD9-212ENST00000508800 KIF14Q15058 1648 aa19.04■□□□□ 0.64
NEDD9-212ENST00000508800 ABCA6Q8N139 1617 aa19.04■□□□□ 0.64
NEDD9-212ENST00000508800 ARHGAP5Q13017 1502 aa19.04■□□□□ 0.64
NEDD9-212ENST00000508800 MYT1LQ9UL68 1186 aa19.03■□□□□ 0.64
NEDD9-212ENST00000508800 CDK11AQ9UQ88 783 aaPredicted RBP19.03■□□□□ 0.64
NEDD9-212ENST00000508800 AFAP1Q8N556 730 aa19.01■□□□□ 0.63
NEDD9-212ENST00000508800 MED1Q15648 1581 aaPredicted RBP19.01■□□□□ 0.63
NEDD9-212ENST00000508800 RANGAP1P46060 587 aaPredicted RBP19■□□□□ 0.63
NEDD9-212ENST00000508800 PLA2R1Q13018 1463 aa19■□□□□ 0.63
NEDD9-212ENST00000508800 EEA1Q15075 1411 aa19■□□□□ 0.63
NEDD9-212ENST00000508800 ZNF142P52746 1687 aaPredicted RBP18.99■□□□□ 0.63
NEDD9-212ENST00000508800 ZNF335Q9H4Z2 1342 aaPredicted RBP18.99■□□□□ 0.63
NEDD9-212ENST00000508800 PKD2Q13563 968 aa18.98■□□□□ 0.63
NEDD9-212ENST00000508800 CLIP1P30622 1438 aa18.97■□□□□ 0.63
NEDD9-212ENST00000508800 SUPT6HQ7KZ85 1726 aaKnown RBP18.97■□□□□ 0.63
NEDD9-212ENST00000508800 FMN1Q68DA7 1419 aa18.96■□□□□ 0.63
NEDD9-212ENST00000508800 TROQ12816 1431 aaPredicted RBP18.95■□□□□ 0.62
NEDD9-212ENST00000508800 TCOF1Q13428 1488 aaKnown RBP18.94■□□□□ 0.62
NEDD9-212ENST00000508800 CDC42BPBQ9Y5S2 1711 aa18.93■□□□□ 0.62
NEDD9-212ENST00000508800 ABCC1P33527 1531 aa18.93■□□□□ 0.62
NEDD9-212ENST00000508800 ITSN2Q9NZM3 1697 aa18.92■□□□□ 0.62
NEDD9-212ENST00000508800 KIDINS220Q9ULH0 1771 aa18.92■□□□□ 0.62
NEDD9-212ENST00000508800 MYO3AQ8NEV4 1616 aa18.92■□□□□ 0.62
NEDD9-212ENST00000508800 PREX2Q70Z35 1606 aa18.91■□□□□ 0.62
NEDD9-212ENST00000508800 NCKAP5LQ9HCH0 1330 aa18.91■□□□□ 0.62
NEDD9-212ENST00000508800 CEP170BQ9Y4F5 1589 aaPredicted RBP18.9■□□□□ 0.62
NEDD9-212ENST00000508800 ZMYM3Q14202 1370 aa18.89■□□□□ 0.61
NEDD9-212ENST00000508800 TOM1O60784 492 aa18.88■□□□□ 0.61
NEDD9-212ENST00000508800 HSPA1LP34931 641 aa18.88■□□□□ 0.61
NEDD9-212ENST00000508800 CPS1P31327 1500 aa18.87■□□□□ 0.61
NEDD9-212ENST00000508800 PPP6R1Q9UPN7 881 aa18.87■□□□□ 0.61
NEDD9-212ENST00000508800 PHF23Q9BUL5 403 aaPredicted RBP18.86■□□□□ 0.61
NEDD9-212ENST00000508800 ATP1B4Q9UN42 357 aaPredicted RBP18.86■□□□□ 0.61
NEDD9-212ENST00000508800 SCAF1Q9H7N4 1312 aaKnown RBP18.85■□□□□ 0.61
NEDD9-212ENST00000508800 CLTCQ00610 1675 aaKnown RBP18.83■□□□□ 0.61
NEDD9-212ENST00000508800 POLR1AO95602 1720 aaPredicted RBP18.81■□□□□ 0.6
NEDD9-212ENST00000508800 PTPRKQ15262 1439 aa18.81■□□□□ 0.6
NEDD9-212ENST00000508800 SAMD9LQ8IVG5 1584 aa18.81■□□□□ 0.6
NEDD9-212ENST00000508800 PIP4K2BP78356 416 aa18.8■□□□□ 0.6
NEDD9-212ENST00000508800 A2ML1A8K2U0 1454 aa18.78■□□□□ 0.6
NEDD9-212ENST00000508800 PLXNC1O60486 1568 aa18.78■□□□□ 0.6
NEDD9-212ENST00000508800 CDC42BPAQ5VT25 1732 aa18.77■□□□□ 0.6
NEDD9-212ENST00000508800 LRRIQ1Q96JM4 1722 aa18.77■□□□□ 0.6
NEDD9-212ENST00000508800 SHANK2Q9UPX8 1470 aa18.77■□□□□ 0.59
NEDD9-212ENST00000508800 DNMT1P26358 1616 aaKnown RBP18.76■□□□□ 0.59
NEDD9-212ENST00000508800 CCDC18Q5T9S5 1454 aa18.75■□□□□ 0.59
NEDD9-212ENST00000508800 ARHGAP35Q9NRY4 1499 aa18.75■□□□□ 0.59
NEDD9-212ENST00000508800 SPAG9O60271 1321 aaKnown RBP18.74■□□□□ 0.59
NEDD9-212ENST00000508800 ATP7AQ04656 1500 aa18.74■□□□□ 0.59
NEDD9-212ENST00000508800 NEURL4Q96JN8 1562 aa18.72■□□□□ 0.59
NEDD9-212ENST00000508800 A2MP01023 1474 aa18.72■□□□□ 0.59
NEDD9-212ENST00000508800 INO80Q9ULG1 1556 aaPredicted RBP18.72■□□□□ 0.59
NEDD9-212ENST00000508800 SYCP2Q9BX26 1530 aa18.71■□□□□ 0.59
NEDD9-212ENST00000508800 PLEKHH2Q8IVE3 1493 aa18.69■□□□□ 0.58
NEDD9-212ENST00000508800 ADGBQ8N7X0 1667 aa18.69■□□□□ 0.58
NEDD9-212ENST00000508800 KIAA1107Q9UPP5 1409 aa18.67■□□□□ 0.58
NEDD9-212ENST00000508800 VWDEQ8N2E2 1590 aa18.67■□□□□ 0.58
NEDD9-212ENST00000508800 ALKQ9UM73 1620 aa18.67■□□□□ 0.58
NEDD9-212ENST00000508800 GGT6Q6P531 493 aa18.66■□□□□ 0.58
NEDD9-212ENST00000508800 FAM135AQ9P2D6 1515 aa18.65■□□□□ 0.58
NEDD9-212ENST00000508800 DEPDC5O75140 1603 aa18.65■□□□□ 0.58
NEDD9-212ENST00000508800 UBTFP17480 764 aaKnown RBP18.65■□□□□ 0.58
NEDD9-212ENST00000508800 RNF17Q9BXT8 1623 aaKnown RBP18.64■□□□□ 0.57
NEDD9-212ENST00000508800 CASKIN1Q8WXD9 1431 aa18.64■□□□□ 0.57
NEDD9-212ENST00000508800 MED14O60244 1454 aa18.64■□□□□ 0.57
NEDD9-212ENST00000508800 ANKLE2Q86XL3 938 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms