RNA–Protein interactions for RNA: ENST00000504875.5

CSF1R-203, Transcript of colony stimulating factor 1 receptor, humanhuman

TSL 1 (best)

Gene CSF1R, Length 3,697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSF1R-203ENST00000504875 GRIN2AQ12879 1464 aa13.53□□□□□ -0.24
CSF1R-203ENST00000504875 UGGT2Q9NYU1 1516 aa13.53□□□□□ -0.24
CSF1R-203ENST00000504875 PRG4Q92954 1404 aaPredicted RBP13.53□□□□□ -0.24
CSF1R-203ENST00000504875 FKBP8Q14318 412 aa13.51□□□□□ -0.25
CSF1R-203ENST00000504875 HNRNPUQ00839 825 aaKnown RBP eCLIP13.5□□□□□ -0.25
CSF1R-203ENST00000504875 SUPT16HQ9Y5B9 1047 aaKnown RBP13.5□□□□□ -0.25
CSF1R-203ENST00000504875 KDM2AQ9Y2K7 1162 aa13.5□□□□□ -0.25
CSF1R-203ENST00000504875 PLB1Q6P1J6 1458 aa13.5□□□□□ -0.25
CSF1R-203ENST00000504875 MIA2Q96PC5 1412 aa13.49□□□□□ -0.25
CSF1R-203ENST00000504875 MYT1LQ9UL68 1186 aa13.49□□□□□ -0.25
CSF1R-203ENST00000504875 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.49□□□□□ -0.25
CSF1R-203ENST00000504875 PKD2Q13563 968 aa13.48□□□□□ -0.25
CSF1R-203ENST00000504875 WDR62O43379 1518 aa13.47□□□□□ -0.25
CSF1R-203ENST00000504875 EIF4G3O43432 1585 aaKnown RBP13.47□□□□□ -0.25
CSF1R-203ENST00000504875 LRRIQ1Q96JM4 1722 aa13.47□□□□□ -0.25
CSF1R-203ENST00000504875 HNRNPMP52272 730 aaKnown RBP eCLIP13.46□□□□□ -0.25
CSF1R-203ENST00000504875 FAM9BQ8IZU0 186 aa13.46□□□□□ -0.25
CSF1R-203ENST00000504875 DAPK1P53355 1430 aa13.46□□□□□ -0.25
CSF1R-203ENST00000504875 NUP153P49790 1475 aaKnown RBP13.45□□□□□ -0.26
CSF1R-203ENST00000504875 TSHZ2Q9NRE2 1034 aa13.45□□□□□ -0.26
CSF1R-203ENST00000504875 SYNJ2O15056 1496 aa13.45□□□□□ -0.26
CSF1R-203ENST00000504875 DISP1Q96F81 1524 aa13.45□□□□□ -0.26
CSF1R-203ENST00000504875 KIAA0556O60303 1618 aa13.44□□□□□ -0.26
CSF1R-203ENST00000504875 TROQ12816 1431 aaPredicted RBP13.44□□□□□ -0.26
CSF1R-203ENST00000504875 CCER2I3L3R5 266 aa13.44□□□□□ -0.26
CSF1R-203ENST00000504875 MAGI1Q96QZ7 1491 aaPredicted RBP13.44□□□□□ -0.26
CSF1R-203ENST00000504875 ABCC5O15440 1437 aa13.43□□□□□ -0.26
CSF1R-203ENST00000504875 ANKRD30AQ9BXX3 1397 aa13.42□□□□□ -0.26
CSF1R-203ENST00000504875 PTPRGP23470 1445 aa13.42□□□□□ -0.26
CSF1R-203ENST00000504875 ERICH6Q7L0X2 663 aa13.42□□□□□ -0.26
CSF1R-203ENST00000504875 RAPGEF6Q8TEU7 1601 aa13.41□□□□□ -0.26
CSF1R-203ENST00000504875 NUP155O75694 1391 aa13.41□□□□□ -0.26
CSF1R-203ENST00000504875 MRS2Q9HD23 443 aa13.41□□□□□ -0.26
CSF1R-203ENST00000504875 TCOF1Q13428 1488 aaKnown RBP13.41□□□□□ -0.26
CSF1R-203ENST00000504875 RGL3Q3MIN7 710 aa13.4□□□□□ -0.27
CSF1R-203ENST00000504875 WASHC2AQ641Q2 1341 aa13.39□□□□□ -0.27
CSF1R-203ENST00000504875 NBPF8Q3BBV2 869 aa13.39□□□□□ -0.27
CSF1R-203ENST00000504875 IRX6P78412 446 aaPredicted RBP13.38□□□□□ -0.27
CSF1R-203ENST00000504875 SENP3-EIF4A1A0A087X0R7 540 aa13.38□□□□□ -0.27
CSF1R-203ENST00000504875 CAMSAP2Q08AD1 1489 aa13.37□□□□□ -0.27
CSF1R-203ENST00000504875 ARHGEF11O15085 1522 aa13.37□□□□□ -0.27
CSF1R-203ENST00000504875 KDM6BO15054 1643 aa13.37□□□□□ -0.27
CSF1R-203ENST00000504875 ROCK1Q13464 1354 aa13.36□□□□□ -0.27
CSF1R-203ENST00000504875 CARD11Q9BXL7 1154 aa13.36□□□□□ -0.27
CSF1R-203ENST00000504875 DCAF11Q8TEB1 546 aa13.35□□□□□ -0.27
CSF1R-203ENST00000504875 CEP170Q5SW79 1584 aa13.35□□□□□ -0.27
CSF1R-203ENST00000504875 ANKRD50Q9ULJ7 1429 aa13.34□□□□□ -0.27
CSF1R-203ENST00000504875 AKNAQ7Z591 1439 aa13.34□□□□□ -0.27
CSF1R-203ENST00000504875 ANKRD30BQ9BXX2 1392 aa13.34□□□□□ -0.27
CSF1R-203ENST00000504875 GPATCH8Q9UKJ3 1502 aaKnown RBP13.33□□□□□ -0.27
CSF1R-203ENST00000504875 C11orf95C9JLR9 678 aaPredicted RBP13.32□□□□□ -0.28
CSF1R-203ENST00000504875 NCOA1Q15788 1441 aa13.32□□□□□ -0.28
CSF1R-203ENST00000504875 KIF15Q9NS87 1388 aa13.3□□□□□ -0.28
CSF1R-203ENST00000504875 CCDC7Q96M83 1385 aa13.29□□□□□ -0.28
CSF1R-203ENST00000504875 C9orf84Q5VXU9 1444 aa13.29□□□□□ -0.28
CSF1R-203ENST00000504875 GCC2Q8IWJ2 1684 aa13.29□□□□□ -0.28
CSF1R-203ENST00000504875 NUP160Q12769 1436 aa13.29□□□□□ -0.28
CSF1R-203ENST00000504875 ATP10BO94823 1461 aa13.29□□□□□ -0.28
CSF1R-203ENST00000504875 KIF14Q15058 1648 aa13.29□□□□□ -0.28
CSF1R-203ENST00000504875 KIF7Q2M1P5 1343 aa13.28□□□□□ -0.28
CSF1R-203ENST00000504875 DNMT1P26358 1616 aaKnown RBP13.28□□□□□ -0.28
CSF1R-203ENST00000504875 PRKRIP1Q9H875 184 aaPredicted RBP13.28□□□□□ -0.28
CSF1R-203ENST00000504875 CCDC184Q52MB2 194 aa13.27□□□□□ -0.28
CSF1R-203ENST00000504875 RPRD2Q5VT52 1461 aaKnown RBP13.27□□□□□ -0.29
CSF1R-203ENST00000504875 KIAA1107Q9UPP5 1409 aa13.27□□□□□ -0.29
CSF1R-203ENST00000504875 USP47Q96K76 1375 aa13.26□□□□□ -0.29
CSF1R-203ENST00000504875 TMC1Q8TDI8 760 aa13.26□□□□□ -0.29
CSF1R-203ENST00000504875 CNTLNQ9NXG0 1405 aa13.25□□□□□ -0.29
CSF1R-203ENST00000504875 DENND4BO75064 1496 aaPredicted RBP13.25□□□□□ -0.29
CSF1R-203ENST00000504875 SALL2Q9Y467 1007 aaPredicted RBP13.24□□□□□ -0.29
CSF1R-203ENST00000504875 ITSN2Q9NZM3 1697 aa13.23□□□□□ -0.29
CSF1R-203ENST00000504875 ST20-MTHFSA0A0A6YYL1 179 aa13.23□□□□□ -0.29
CSF1R-203ENST00000504875 RSPH4AQ5TD94 716 aa13.22□□□□□ -0.29
CSF1R-203ENST00000504875 EFCAB2Q5VUJ9 269 aa13.22□□□□□ -0.29
CSF1R-203ENST00000504875 ARHGAP5Q13017 1502 aa13.22□□□□□ -0.29
CSF1R-203ENST00000504875 ROCK2O75116 1388 aaKnown RBP13.21□□□□□ -0.29
CSF1R-203ENST00000504875 PZPP20742 1482 aa13.2□□□□□ -0.3
CSF1R-203ENST00000504875 CCDC144AA2RUR9 1427 aa13.18□□□□□ -0.3
CSF1R-203ENST00000504875 RBM19Q9Y4C8 960 aaKnown RBP13.17□□□□□ -0.3
CSF1R-203ENST00000504875 KDM5BQ9UGL1 1544 aa13.17□□□□□ -0.3
CSF1R-203ENST00000504875 TEX14Q8IWB6 1497 aa13.16□□□□□ -0.3
CSF1R-203ENST00000504875 CHGAP10645 457 aaKnown RBP13.16□□□□□ -0.3
CSF1R-203ENST00000504875 CCDC141Q6ZP82 1450 aa13.16□□□□□ -0.3
CSF1R-203ENST00000504875 NPM1P06748 294 aaKnown RBP eCLIP13.16□□□□□ -0.3
CSF1R-203ENST00000504875 ABCA8O94911 1581 aa13.15□□□□□ -0.3
CSF1R-203ENST00000504875 SPAG9O60271 1321 aaKnown RBP13.15□□□□□ -0.3
CSF1R-203ENST00000504875 AFAP1Q8N556 730 aa13.15□□□□□ -0.31
CSF1R-203ENST00000504875 ANO8Q9HCE9 1232 aaPredicted RBP13.15□□□□□ -0.31
CSF1R-203ENST00000504875 NBPF1Q3BBV0 1214 aa13.13□□□□□ -0.31
CSF1R-203ENST00000504875 CC2D1BQ5T0F9 858 aaKnown RBP13.13□□□□□ -0.31
CSF1R-203ENST00000504875 ADGRL2O95490 1459 aa13.13□□□□□ -0.31
CSF1R-203ENST00000504875 ABCC10Q5T3U5 1492 aa13.13□□□□□ -0.31
CSF1R-203ENST00000504875 ADGBQ8N7X0 1667 aa13.11□□□□□ -0.31
CSF1R-203ENST00000504875 SYCP2Q9BX26 1530 aa13.11□□□□□ -0.31
CSF1R-203ENST00000504875 KIF3BO15066 747 aa13.1□□□□□ -0.31
CSF1R-203ENST00000504875 B4GALNT3Q6L9W6 998 aa13.1□□□□□ -0.31
CSF1R-203ENST00000504875 CDC42BPAQ5VT25 1732 aa13.1□□□□□ -0.31
CSF1R-203ENST00000504875 SENP3Q9H4L4 574 aaPredicted RBP13.09□□□□□ -0.31
CSF1R-203ENST00000504875 PLEKHH2Q8IVE3 1493 aa13.08□□□□□ -0.32
CSF1R-203ENST00000504875 CHD1O14646 1710 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms