RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 MPHOSPH9Q99550 1183 aa13.94□□□□□ -0.18
CLIP1-204ENST00000501271 PLB1Q6P1J6 1458 aa13.94□□□□□ -0.18
CLIP1-204ENST00000501271 PRG4Q92954 1404 aaPredicted RBP13.93□□□□□ -0.18
CLIP1-204ENST00000501271 ANP32CO43423 234 aa13.93□□□□□ -0.18
CLIP1-204ENST00000501271 ITSN2Q9NZM3 1697 aa13.93□□□□□ -0.18
CLIP1-204ENST00000501271 TROQ12816 1431 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-204ENST00000501271 KIF14Q15058 1648 aa13.92□□□□□ -0.18
CLIP1-204ENST00000501271 CCER2I3L3R5 266 aa13.92□□□□□ -0.18
CLIP1-204ENST00000501271 ADCY10Q96PN6 1610 aa13.92□□□□□ -0.18
CLIP1-204ENST00000501271 FOXD1Q16676 465 aa13.92□□□□□ -0.18
CLIP1-204ENST00000501271 CHMP7Q8WUX9 453 aaPredicted RBP13.92□□□□□ -0.18
CLIP1-204ENST00000501271 CDK11AQ9UQ88 783 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-204ENST00000501271 CAMSAP2Q08AD1 1489 aa13.91□□□□□ -0.18
CLIP1-204ENST00000501271 SENP3Q9H4L4 574 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-204ENST00000501271 NUP160Q12769 1436 aa13.9□□□□□ -0.18
CLIP1-204ENST00000501271 ADGBQ8N7X0 1667 aa13.9□□□□□ -0.19
CLIP1-204ENST00000501271 CROCC2H7BZ55 1655 aa13.89□□□□□ -0.19
CLIP1-204ENST00000501271 FBLN2P98095 1184 aa13.88□□□□□ -0.19
CLIP1-204ENST00000501271 ANKRD30BQ9BXX2 1392 aa13.88□□□□□ -0.19
CLIP1-204ENST00000501271 GPATCH8Q9UKJ3 1502 aaKnown RBP13.88□□□□□ -0.19
CLIP1-204ENST00000501271 RPRD2Q5VT52 1461 aaKnown RBP13.88□□□□□ -0.19
CLIP1-204ENST00000501271 HSPA5P11021 654 aaKnown RBP13.88□□□□□ -0.19
CLIP1-204ENST00000501271 L3MBTL2Q969R5 705 aa13.87□□□□□ -0.19
CLIP1-204ENST00000501271 TEX14Q8IWB6 1497 aa13.87□□□□□ -0.19
CLIP1-204ENST00000501271 CARMIL2Q6F5E8 1435 aa13.86□□□□□ -0.19
CLIP1-204ENST00000501271 WASHC2AQ641Q2 1341 aa13.86□□□□□ -0.19
CLIP1-204ENST00000501271 JPH4Q96JJ6 628 aa13.84□□□□□ -0.19
CLIP1-204ENST00000501271 CFDP1Q9UEE9 299 aaPredicted RBP13.84□□□□□ -0.19
CLIP1-204ENST00000501271 PZPP20742 1482 aa13.84□□□□□ -0.19
CLIP1-204ENST00000501271 CDC42BPAQ5VT25 1732 aa13.84□□□□□ -0.19
CLIP1-204ENST00000501271 ABCA8O94911 1581 aa13.84□□□□□ -0.19
CLIP1-204ENST00000501271 NCOA1Q15788 1441 aa13.84□□□□□ -0.19
CLIP1-204ENST00000501271 ADGRL2O95490 1459 aa13.83□□□□□ -0.2
CLIP1-204ENST00000501271 EIF4G2P78344 907 aaKnown RBP eCLIP13.82□□□□□ -0.2
CLIP1-204ENST00000501271 SLC4A1APQ9BWU0 796 aaKnown RBP13.82□□□□□ -0.2
CLIP1-204ENST00000501271 ZNF777Q9ULD5 760 aaPredicted RBP13.81□□□□□ -0.2
CLIP1-204ENST00000501271 NBPF8Q3BBV2 869 aa13.8□□□□□ -0.2
CLIP1-204ENST00000501271 ABCC10Q5T3U5 1492 aa13.79□□□□□ -0.2
CLIP1-204ENST00000501271 ATP10BO94823 1461 aa13.78□□□□□ -0.2
CLIP1-204ENST00000501271 POLR1AO95602 1720 aaPredicted RBP13.78□□□□□ -0.2
CLIP1-204ENST00000501271 CNTLNQ9NXG0 1405 aa13.78□□□□□ -0.2
CLIP1-204ENST00000501271 C11orf95C9JLR9 678 aaPredicted RBP13.77□□□□□ -0.21
CLIP1-204ENST00000501271 FKBP8Q14318 412 aa13.76□□□□□ -0.21
CLIP1-204ENST00000501271 CCDC7Q96M83 1385 aa13.76□□□□□ -0.21
CLIP1-204ENST00000501271 ANKRD30AQ9BXX3 1397 aa13.76□□□□□ -0.21
CLIP1-204ENST00000501271 MBD5Q9P267 1494 aa13.75□□□□□ -0.21
CLIP1-204ENST00000501271 SPATA31E1Q6ZUB1 1445 aa13.75□□□□□ -0.21
CLIP1-204ENST00000501271 KIAA1107Q9UPP5 1409 aa13.75□□□□□ -0.21
CLIP1-204ENST00000501271 BCANQ96GW7 911 aa13.75□□□□□ -0.21
CLIP1-204ENST00000501271 PLEKHD1A6NEE1 506 aa13.74□□□□□ -0.21
CLIP1-204ENST00000501271 SHANK2Q9UPX8 1470 aa13.74□□□□□ -0.21
CLIP1-204ENST00000501271 ANKRD50Q9ULJ7 1429 aa13.74□□□□□ -0.21
CLIP1-204ENST00000501271 C9orf84Q5VXU9 1444 aa13.73□□□□□ -0.21
CLIP1-204ENST00000501271 CHD1O14646 1710 aa13.71□□□□□ -0.21
CLIP1-204ENST00000501271 PKD2Q13563 968 aa13.71□□□□□ -0.22
CLIP1-204ENST00000501271 CDC42BPBQ9Y5S2 1711 aa13.7□□□□□ -0.22
CLIP1-204ENST00000501271 TSHZ2Q9NRE2 1034 aa13.7□□□□□ -0.22
CLIP1-204ENST00000501271 KIF7Q2M1P5 1343 aa13.7□□□□□ -0.22
CLIP1-204ENST00000501271 HNRNPUQ00839 825 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLIP1-204ENST00000501271 KDM5DQ9BY66 1539 aa13.69□□□□□ -0.22
CLIP1-204ENST00000501271 ARHGEF5Q12774 1597 aa13.69□□□□□ -0.22
CLIP1-204ENST00000501271 CCDC184Q52MB2 194 aa13.69□□□□□ -0.22
CLIP1-204ENST00000501271 PTPRGP23470 1445 aa13.68□□□□□ -0.22
CLIP1-204ENST00000501271 PREX2Q70Z35 1606 aa13.68□□□□□ -0.22
CLIP1-204ENST00000501271 NEFLP07196 543 aa13.68□□□□□ -0.22
CLIP1-204ENST00000501271 SAMD9LQ8IVG5 1584 aa13.68□□□□□ -0.22
CLIP1-204ENST00000501271 BCORL1Q5H9F3 1711 aa13.68□□□□□ -0.22
CLIP1-204ENST00000501271 PRKRIP1Q9H875 184 aaPredicted RBP13.68□□□□□ -0.22
CLIP1-204ENST00000501271 NUP155O75694 1391 aa13.67□□□□□ -0.22
CLIP1-204ENST00000501271 KDM5CP41229 1560 aa13.66□□□□□ -0.22
CLIP1-204ENST00000501271 KIF15Q9NS87 1388 aa13.65□□□□□ -0.22
CLIP1-204ENST00000501271 HNRNPMP52272 730 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLIP1-204ENST00000501271 SHROOM2Q13796 1616 aa13.65□□□□□ -0.22
CLIP1-204ENST00000501271 ZNF326Q5BKZ1 582 aaKnown RBP13.64□□□□□ -0.23
CLIP1-204ENST00000501271 USP47Q96K76 1375 aa13.64□□□□□ -0.23
CLIP1-204ENST00000501271 TSPY4P0CV99 314 aa13.64□□□□□ -0.23
CLIP1-204ENST00000501271 TSPY10P0CW01 314 aa13.64□□□□□ -0.23
CLIP1-204ENST00000501271 CCDC141Q6ZP82 1450 aa13.63□□□□□ -0.23
CLIP1-204ENST00000501271 TTC37Q6PGP7 1564 aa13.63□□□□□ -0.23
CLIP1-204ENST00000501271 UHRF1BP1Q6BDS2 1440 aa13.62□□□□□ -0.23
CLIP1-204ENST00000501271 ARHGEF12Q9NZN5 1544 aa13.62□□□□□ -0.23
CLIP1-204ENST00000501271 RALGAPBQ86X10 1494 aa13.62□□□□□ -0.23
CLIP1-204ENST00000501271 SYCP2Q9BX26 1530 aa13.61□□□□□ -0.23
CLIP1-204ENST00000501271 ERCC6L2Q5T890 1561 aa13.6□□□□□ -0.23
CLIP1-204ENST00000501271 MRS2Q9HD23 443 aa13.6□□□□□ -0.23
CLIP1-204ENST00000501271 DHX29Q7Z478 1369 aaKnown RBP13.59□□□□□ -0.23
CLIP1-204ENST00000501271 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.59□□□□□ -0.23
CLIP1-204ENST00000501271 FAM135AQ9P2D6 1515 aa13.59□□□□□ -0.23
CLIP1-204ENST00000501271 FAM9BQ8IZU0 186 aa13.59□□□□□ -0.23
CLIP1-204ENST00000501271 ARHGAP5Q13017 1502 aa13.58□□□□□ -0.24
CLIP1-204ENST00000501271 MYO5CQ9NQX4 1742 aa13.58□□□□□ -0.24
CLIP1-204ENST00000501271 MAST1Q9Y2H9 1570 aa13.57□□□□□ -0.24
CLIP1-204ENST00000501271 ABCC2Q92887 1545 aa13.57□□□□□ -0.24
CLIP1-204ENST00000501271 UNC13BO14795 1591 aa13.56□□□□□ -0.24
CLIP1-204ENST00000501271 POLR3GLQ9BT43 218 aa13.55□□□□□ -0.24
CLIP1-204ENST00000501271 ZBED9Q6R2W3 1325 aa13.54□□□□□ -0.24
CLIP1-204ENST00000501271 IRX6P78412 446 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-204ENST00000501271 CARD11Q9BXL7 1154 aa13.54□□□□□ -0.24
CLIP1-204ENST00000501271 PLXNC1O60486 1568 aa13.53□□□□□ -0.24
CLIP1-204ENST00000501271 ARID4BQ4LE39 1312 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms