RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-215ENST00000497139 BRPF3Q9ULD4 1205 aa17.34■□□□□ 0.37
VEGFA-215ENST00000497139 EIF5BO60841 1220 aaKnown RBP17.31■□□□□ 0.36
VEGFA-215ENST00000497139 GCC2Q8IWJ2 1684 aa17.3■□□□□ 0.36
VEGFA-215ENST00000497139 NPM2Q86SE8 214 aaKnown RBP17.29■□□□□ 0.36
VEGFA-215ENST00000497139 PTPRKQ15262 1439 aa17.28■□□□□ 0.36
VEGFA-215ENST00000497139 ABCA10Q8WWZ4 1543 aa17.28■□□□□ 0.36
VEGFA-215ENST00000497139 GLIPR1L2Q4G1C9 344 aa17.27■□□□□ 0.36
VEGFA-215ENST00000497139 TOPBP1Q92547 1522 aa17.27■□□□□ 0.36
VEGFA-215ENST00000497139 PKNOX2Q96KN3 472 aa17.27■□□□□ 0.36
VEGFA-215ENST00000497139 SPATA31E1Q6ZUB1 1445 aa17.26■□□□□ 0.35
VEGFA-215ENST00000497139 NESP48681 1621 aa17.25■□□□□ 0.35
VEGFA-215ENST00000497139 NFKBIBQ15653 356 aa17.25■□□□□ 0.35
VEGFA-215ENST00000497139 POLA1P09884 1462 aaPredicted RBP17.24■□□□□ 0.35
VEGFA-215ENST00000497139 LAMC3Q9Y6N6 1575 aa17.23■□□□□ 0.35
VEGFA-215ENST00000497139 KIF7Q2M1P5 1343 aa17.23■□□□□ 0.35
VEGFA-215ENST00000497139 MIA2Q96PC5 1412 aa17.23■□□□□ 0.35
VEGFA-215ENST00000497139 RRP1P56182 461 aaKnown RBP17.22■□□□□ 0.35
VEGFA-215ENST00000497139 FRAT1Q92837 279 aaPredicted RBP17.22■□□□□ 0.35
VEGFA-215ENST00000497139 DENND4BO75064 1496 aaPredicted RBP17.22■□□□□ 0.35
VEGFA-215ENST00000497139 DHX29Q7Z478 1369 aaKnown RBP17.22■□□□□ 0.35
VEGFA-215ENST00000497139 MYOM3Q5VTT5 1437 aa17.21■□□□□ 0.35
VEGFA-215ENST00000497139 CUL7Q14999 1698 aa17.2■□□□□ 0.34
VEGFA-215ENST00000497139 RAD54L2Q9Y4B4 1467 aa17.2■□□□□ 0.34
VEGFA-215ENST00000497139 ARID4BQ4LE39 1312 aaPredicted RBP17.19■□□□□ 0.34
VEGFA-215ENST00000497139 THOC2Q8NI27 1593 aaKnown RBP17.18■□□□□ 0.34
VEGFA-215ENST00000497139 SUPT6HQ7KZ85 1726 aaKnown RBP17.17■□□□□ 0.34
VEGFA-215ENST00000497139 RPRD2Q5VT52 1461 aaKnown RBP17.16■□□□□ 0.34
VEGFA-215ENST00000497139 LRPPRCP42704 1394 aaKnown RBP17.16■□□□□ 0.34
VEGFA-215ENST00000497139 TEX14Q8IWB6 1497 aa17.15■□□□□ 0.34
VEGFA-215ENST00000497139 KTN1Q86UP2 1357 aaKnown RBP17.15■□□□□ 0.34
VEGFA-215ENST00000497139 SNAPC4Q5SXM2 1469 aa17.15■□□□□ 0.34
VEGFA-215ENST00000497139 PNISRQ8TF01 805 aaKnown RBP17.15■□□□□ 0.34
VEGFA-215ENST00000497139 L3MBTL2Q969R5 705 aa17.15■□□□□ 0.34
VEGFA-215ENST00000497139 FHOD3Q2V2M9 1422 aa17.15■□□□□ 0.34
VEGFA-215ENST00000497139 MTUS2Q5JR59 1369 aa17.15■□□□□ 0.34
VEGFA-215ENST00000497139 TCOF1Q13428 1488 aaKnown RBP17.14■□□□□ 0.33
VEGFA-215ENST00000497139 EXOC6Q8TAG9 804 aa17.14■□□□□ 0.33
VEGFA-215ENST00000497139 DAXXQ9UER7 740 aaPredicted RBP17.14■□□□□ 0.33
VEGFA-215ENST00000497139 EHBP1L1Q8N3D4 1523 aa17.14■□□□□ 0.33
VEGFA-215ENST00000497139 URB2Q14146 1524 aaKnown RBP17.13■□□□□ 0.33
VEGFA-215ENST00000497139 PDE3BQ13370 1112 aa17.13■□□□□ 0.33
VEGFA-215ENST00000497139 ROCK2O75116 1388 aaKnown RBP17.12■□□□□ 0.33
VEGFA-215ENST00000497139 CTTNBP2Q8WZ74 1663 aa17.12■□□□□ 0.33
VEGFA-215ENST00000497139 RCAN3Q9UKA8 241 aa17.11■□□□□ 0.33
VEGFA-215ENST00000497139 ARHGEF11O15085 1522 aa17.11■□□□□ 0.33
VEGFA-215ENST00000497139 BRD4O60885 1362 aaPredicted RBP17.1■□□□□ 0.33
VEGFA-215ENST00000497139 UGGT2Q9NYU1 1516 aa17.09■□□□□ 0.33
VEGFA-215ENST00000497139 PDS5BQ9NTI5 1447 aa17.08■□□□□ 0.33
VEGFA-215ENST00000497139 ATP1B4Q9UN42 357 aaPredicted RBP17.08■□□□□ 0.33
VEGFA-215ENST00000497139 TMC1Q8TDI8 760 aa17.06■□□□□ 0.32
VEGFA-215ENST00000497139 MPHOSPH9Q99550 1183 aa17.06■□□□□ 0.32
VEGFA-215ENST00000497139 ANKRD30BQ9BXX2 1392 aa17.06■□□□□ 0.32
VEGFA-215ENST00000497139 NBPF8Q3BBV2 869 aa17.05■□□□□ 0.32
VEGFA-215ENST00000497139 INSRP06213 1382 aa17.04■□□□□ 0.32
VEGFA-215ENST00000497139 ZMYM4Q5VZL5 1548 aa17.04■□□□□ 0.32
VEGFA-215ENST00000497139 L1TD1Q5T7N2 865 aaKnown RBP17.04■□□□□ 0.32
VEGFA-215ENST00000497139 KIF15Q9NS87 1388 aa17.03■□□□□ 0.32
VEGFA-215ENST00000497139 LRRIQ1Q96JM4 1722 aa17.03■□□□□ 0.32
VEGFA-215ENST00000497139 BCORL1Q5H9F3 1711 aa17.03■□□□□ 0.32
VEGFA-215ENST00000497139 DCAF11Q8TEB1 546 aa17.02■□□□□ 0.32
VEGFA-215ENST00000497139 KDM6BO15054 1643 aa17.02■□□□□ 0.32
VEGFA-215ENST00000497139 KIF21AQ7Z4S6 1674 aa17.02■□□□□ 0.31
VEGFA-215ENST00000497139 GRIN2BQ13224 1484 aa17.02■□□□□ 0.31
VEGFA-215ENST00000497139 RRP9O43818 475 aaKnown RBP17.01■□□□□ 0.31
VEGFA-215ENST00000497139 GAPVD1Q14C86 1478 aa17.01■□□□□ 0.31
VEGFA-215ENST00000497139 MBD5Q9P267 1494 aa17.01■□□□□ 0.31
VEGFA-215ENST00000497139 KIF14Q15058 1648 aa17.01■□□□□ 0.31
VEGFA-215ENST00000497139 P3H3Q8IVL6 736 aa17.01■□□□□ 0.31
VEGFA-215ENST00000497139 SAMD9Q5K651 1589 aa17■□□□□ 0.31
VEGFA-215ENST00000497139 MYBBP1AQ9BQG0 1328 aaKnown RBP17■□□□□ 0.31
VEGFA-215ENST00000497139 RALBP1Q15311 655 aa17■□□□□ 0.31
VEGFA-215ENST00000497139 KDM5CP41229 1560 aa17■□□□□ 0.31
VEGFA-215ENST00000497139 FRAT2O75474 233 aaPredicted RBP16.99■□□□□ 0.31
VEGFA-215ENST00000497139 FAM161AQ3B820 660 aa16.99■□□□□ 0.31
VEGFA-215ENST00000497139 TDRD9Q8NDG6 1382 aaKnown RBP16.97■□□□□ 0.31
VEGFA-215ENST00000497139 USP47Q96K76 1375 aa16.97■□□□□ 0.31
VEGFA-215ENST00000497139 PLEKHH2Q8IVE3 1493 aa16.97■□□□□ 0.31
VEGFA-215ENST00000497139 ZMYND15Q9H091 742 aa16.97■□□□□ 0.31
VEGFA-215ENST00000497139 RRP7BPQ9NSQ0 103 aa16.97■□□□□ 0.31
VEGFA-215ENST00000497139 KDM2BQ8NHM5 1336 aa16.96■□□□□ 0.31
VEGFA-215ENST00000497139 ROCK1Q13464 1354 aa16.96■□□□□ 0.31
VEGFA-215ENST00000497139 CENPQQ7L2Z9 268 aaPredicted RBP16.96■□□□□ 0.31
VEGFA-215ENST00000497139 TARBP1Q13395 1621 aaKnown RBP16.96■□□□□ 0.31
VEGFA-215ENST00000497139 E9PCH4 1651 aa16.95■□□□□ 0.3
VEGFA-215ENST00000497139 RRAGDQ9NQL2 400 aaPredicted RBP16.94■□□□□ 0.3
VEGFA-215ENST00000497139 VSIG10Q8N0Z9 540 aa16.93■□□□□ 0.3
VEGFA-215ENST00000497139 VIRMAQ69YN4 1812 aaKnown RBP16.93■□□□□ 0.3
VEGFA-215ENST00000497139 HSP90AA2PQ14568 343 aaPredicted RBP16.92■□□□□ 0.3
VEGFA-215ENST00000497139 SLC4A3P48751 1232 aa16.92■□□□□ 0.3
VEGFA-215ENST00000497139 C8orf34Q49A92 452 aa16.92■□□□□ 0.3
VEGFA-215ENST00000497139 CLCN1P35523 988 aa16.91■□□□□ 0.3
VEGFA-215ENST00000497139 HSP90AA1P07900 732 aaKnown RBP16.9■□□□□ 0.3
VEGFA-215ENST00000497139 CRBNQ96SW2 442 aa16.89■□□□□ 0.29
VEGFA-215ENST00000497139 PNNQ9H307 717 aaKnown RBP16.89■□□□□ 0.29
VEGFA-215ENST00000497139 RALGAPBQ86X10 1494 aa16.88■□□□□ 0.29
VEGFA-215ENST00000497139 UHRF1BP1Q6BDS2 1440 aa16.88■□□□□ 0.29
VEGFA-215ENST00000497139 NLRP13Q86W25 1043 aa16.88■□□□□ 0.29
VEGFA-215ENST00000497139 BLMP54132 1417 aaPredicted RBP16.87■□□□□ 0.29
VEGFA-215ENST00000497139 PBRM1Q86U86 1689 aa16.86■□□□□ 0.29
VEGFA-215ENST00000497139 MAGI3Q5TCQ9 1506 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms