RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 FRAT1Q92837 279 aaPredicted RBP15.62■□□□□ 0.09
HDAC4-210ENST00000493582 SLC4A3P48751 1232 aa15.61■□□□□ 0.09
HDAC4-210ENST00000493582 SKAP1Q86WV1 359 aa15.61■□□□□ 0.09
HDAC4-210ENST00000493582 NFKBIBQ15653 356 aa15.61■□□□□ 0.09
HDAC4-210ENST00000493582 CFTRP13569 1480 aa15.6■□□□□ 0.09
HDAC4-210ENST00000493582 MTUS2Q5JR59 1369 aa15.59■□□□□ 0.09
HDAC4-210ENST00000493582 DENND4BO75064 1496 aaPredicted RBP15.59■□□□□ 0.09
HDAC4-210ENST00000493582 RRP1P56182 461 aaKnown RBP15.58■□□□□ 0.08
HDAC4-210ENST00000493582 PNISRQ8TF01 805 aaKnown RBP15.57■□□□□ 0.08
HDAC4-210ENST00000493582 MPHOSPH9Q99550 1183 aa15.57■□□□□ 0.08
HDAC4-210ENST00000493582 PRDM2Q13029 1718 aa15.57■□□□□ 0.08
HDAC4-210ENST00000493582 CASKIN1Q8WXD9 1431 aa15.57■□□□□ 0.08
HDAC4-210ENST00000493582 FYCO1Q9BQS8 1478 aa15.56■□□□□ 0.08
HDAC4-210ENST00000493582 TMC1Q8TDI8 760 aa15.55■□□□□ 0.08
HDAC4-210ENST00000493582 MS4A1P11836 297 aa15.55■□□□□ 0.08
HDAC4-210ENST00000493582 DHX29Q7Z478 1369 aaKnown RBP15.54■□□□□ 0.08
HDAC4-210ENST00000493582 FGD5Q6ZNL6 1462 aa15.53■□□□□ 0.08
HDAC4-210ENST00000493582 RCAN3Q9UKA8 241 aa15.52■□□□□ 0.08
HDAC4-210ENST00000493582 SPATA31E1Q6ZUB1 1445 aa15.52■□□□□ 0.07
HDAC4-210ENST00000493582 DDRGK1Q96HY6 314 aa15.52■□□□□ 0.07
HDAC4-210ENST00000493582 MYOM3Q5VTT5 1437 aa15.5■□□□□ 0.07
HDAC4-210ENST00000493582 DCAF11Q8TEB1 546 aa15.49■□□□□ 0.07
HDAC4-210ENST00000493582 RSPH6AQ9H0K4 717 aa15.48■□□□□ 0.07
HDAC4-210ENST00000493582 DAXXQ9UER7 740 aaPredicted RBP15.48■□□□□ 0.07
HDAC4-210ENST00000493582 PLIN1O60240 522 aa15.48■□□□□ 0.07
HDAC4-210ENST00000493582 FRAT2O75474 233 aaPredicted RBP15.47■□□□□ 0.07
HDAC4-210ENST00000493582 KDM6BO15054 1643 aa15.46■□□□□ 0.07
HDAC4-210ENST00000493582 ZNF326Q5BKZ1 582 aaKnown RBP15.46■□□□□ 0.06
HDAC4-210ENST00000493582 FAM43AQ8N2R8 423 aa15.44■□□□□ 0.06
HDAC4-210ENST00000493582 EFCAB5A4FU69 1503 aa15.43■□□□□ 0.06
HDAC4-210ENST00000493582 CDCA7LQ96GN5 454 aa15.43■□□□□ 0.06
HDAC4-210ENST00000493582 ABCA5Q8WWZ7 1642 aa15.43■□□□□ 0.06
HDAC4-210ENST00000493582 PKNOX2Q96KN3 472 aa15.42■□□□□ 0.06
HDAC4-210ENST00000493582 ANKRD30BQ9BXX2 1392 aa15.42■□□□□ 0.06
HDAC4-210ENST00000493582 HECW1Q76N89 1606 aa15.41■□□□□ 0.06
HDAC4-210ENST00000493582 SNAPC4Q5SXM2 1469 aa15.41■□□□□ 0.06
HDAC4-210ENST00000493582 CRBNQ96SW2 442 aa15.4■□□□□ 0.06
HDAC4-210ENST00000493582 RPRD2Q5VT52 1461 aaKnown RBP15.4■□□□□ 0.06
HDAC4-210ENST00000493582 TEX14Q8IWB6 1497 aa15.4■□□□□ 0.06
HDAC4-210ENST00000493582 LRPPRCP42704 1394 aaKnown RBP15.39■□□□□ 0.05
HDAC4-210ENST00000493582 SLC4A1APQ9BWU0 796 aaKnown RBP15.38■□□□□ 0.05
HDAC4-210ENST00000493582 LRRIQ1Q96JM4 1722 aa15.38■□□□□ 0.05
HDAC4-210ENST00000493582 USP47Q96K76 1375 aa15.38■□□□□ 0.05
HDAC4-210ENST00000493582 CTTNBP2Q8WZ74 1663 aa15.38■□□□□ 0.05
HDAC4-210ENST00000493582 POLR1AO95602 1720 aaPredicted RBP15.36■□□□□ 0.05
HDAC4-210ENST00000493582 MIA2Q96PC5 1412 aa15.36■□□□□ 0.05
HDAC4-210ENST00000493582 BCORL1Q5H9F3 1711 aa15.35■□□□□ 0.05
HDAC4-210ENST00000493582 C20orf194Q5TEA3 1177 aa15.34■□□□□ 0.05
HDAC4-210ENST00000493582 RRAGDQ9NQL2 400 aaPredicted RBP15.34■□□□□ 0.05
HDAC4-210ENST00000493582 MYBBP1AQ9BQG0 1328 aaKnown RBP15.34■□□□□ 0.05
HDAC4-210ENST00000493582 BRD4O60885 1362 aaPredicted RBP15.33■□□□□ 0.04
HDAC4-210ENST00000493582 GCC2Q8IWJ2 1684 aa15.33■□□□□ 0.04
HDAC4-210ENST00000493582 POGKQ9P215 609 aa15.32■□□□□ 0.04
HDAC4-210ENST00000493582 SUPT6HQ7KZ85 1726 aaKnown RBP15.32■□□□□ 0.04
HDAC4-210ENST00000493582 PDE3BQ13370 1112 aa15.32■□□□□ 0.04
HDAC4-210ENST00000493582 C8orf34Q49A92 452 aa15.32■□□□□ 0.04
HDAC4-210ENST00000493582 KIF15Q9NS87 1388 aa15.32■□□□□ 0.04
HDAC4-210ENST00000493582 CADPSQ9ULU8 1353 aa15.32■□□□□ 0.04
HDAC4-210ENST00000493582 FAM161AQ3B820 660 aa15.31■□□□□ 0.04
HDAC4-210ENST00000493582 UGGT2Q9NYU1 1516 aa15.31■□□□□ 0.04
HDAC4-210ENST00000493582 CC2D2AQ9P2K1 1620 aa15.3■□□□□ 0.04
HDAC4-210ENST00000493582 ARID3CA6NKF2 412 aa15.3■□□□□ 0.04
HDAC4-210ENST00000493582 CUL7Q14999 1698 aa15.29■□□□□ 0.04
HDAC4-210ENST00000493582 RALBP1Q15311 655 aa15.29■□□□□ 0.04
HDAC4-210ENST00000493582 VSIG10Q8N0Z9 540 aa15.29■□□□□ 0.04
HDAC4-210ENST00000493582 RGS3P49796 1198 aa15.29■□□□□ 0.04
HDAC4-210ENST00000493582 MAGI3Q5TCQ9 1506 aa15.29■□□□□ 0.04
HDAC4-210ENST00000493582 ARID4BQ4LE39 1312 aaPredicted RBP15.28■□□□□ 0.04
HDAC4-210ENST00000493582 KDM2BQ8NHM5 1336 aa15.28■□□□□ 0.04
HDAC4-210ENST00000493582 ARXQ96QS3 562 aa15.28■□□□□ 0.04
HDAC4-210ENST00000493582 GRIN2BQ13224 1484 aa15.28■□□□□ 0.04
HDAC4-210ENST00000493582 RAD54L2Q9Y4B4 1467 aa15.28■□□□□ 0.04
HDAC4-210ENST00000493582 TCOF1Q13428 1488 aaKnown RBP15.27■□□□□ 0.04
HDAC4-210ENST00000493582 EHBP1L1Q8N3D4 1523 aa15.27■□□□□ 0.04
HDAC4-210ENST00000493582 ZMYND15Q9H091 742 aa15.27■□□□□ 0.04
HDAC4-210ENST00000493582 ABCA10Q8WWZ4 1543 aa15.27■□□□□ 0.03
HDAC4-210ENST00000493582 GLIPR1L2Q4G1C9 344 aa15.26■□□□□ 0.03
HDAC4-210ENST00000493582 ROCK2O75116 1388 aaKnown RBP15.26■□□□□ 0.03
HDAC4-210ENST00000493582 ST20-MTHFSA0A0A6YYL1 179 aa15.26■□□□□ 0.03
HDAC4-210ENST00000493582 CARD11Q9BXL7 1154 aa15.26■□□□□ 0.03
HDAC4-210ENST00000493582 SAMD9Q5K651 1589 aa15.26■□□□□ 0.03
HDAC4-210ENST00000493582 KTN1Q86UP2 1357 aaKnown RBP15.25■□□□□ 0.03
HDAC4-210ENST00000493582 CENPQQ7L2Z9 268 aaPredicted RBP15.25■□□□□ 0.03
HDAC4-210ENST00000493582 NLRP13Q86W25 1043 aa15.25■□□□□ 0.03
HDAC4-210ENST00000493582 ARHGEF11O15085 1522 aa15.24■□□□□ 0.03
HDAC4-210ENST00000493582 THOC2Q8NI27 1593 aaKnown RBP15.23■□□□□ 0.03
HDAC4-210ENST00000493582 NAP1L5Q96NT1 182 aaPredicted RBP15.23■□□□□ 0.03
HDAC4-210ENST00000493582 DNMBPQ6XZF7 1577 aa15.22■□□□□ 0.03
HDAC4-210ENST00000493582 ZNF644Q9H582 1327 aaPredicted RBP15.22■□□□□ 0.03
HDAC4-210ENST00000493582 SLKQ9H2G2 1235 aaPredicted RBP15.22■□□□□ 0.03
HDAC4-210ENST00000493582 KDM2AQ9Y2K7 1162 aa15.21■□□□□ 0.03
HDAC4-210ENST00000493582 POLA1P09884 1462 aaPredicted RBP15.21■□□□□ 0.03
HDAC4-210ENST00000493582 FANCD2Q9BXW9 1451 aa15.21■□□□□ 0.03
HDAC4-210ENST00000493582 KDM5CP41229 1560 aa15.2■□□□□ 0.02
HDAC4-210ENST00000493582 MBD5Q9P267 1494 aa15.19■□□□□ 0.02
HDAC4-210ENST00000493582 HSP90AA2PQ14568 343 aaPredicted RBP15.18■□□□□ 0.02
HDAC4-210ENST00000493582 CC2D1BQ5T0F9 858 aaKnown RBP15.18■□□□□ 0.02
HDAC4-210ENST00000493582 PKD2Q13563 968 aa15.18■□□□□ 0.02
HDAC4-210ENST00000493582 TOPBP1Q92547 1522 aa15.17■□□□□ 0.02
HDAC4-210ENST00000493582 PNNQ9H307 717 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms